+E Transcription factors KO
#
Transcription Factors - Lysinibacillus sphaericus
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D Bsph_p123 Modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Bsph_p029 Modification methylase PspPI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Bsph_0497 Modification methylase BsuRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Bsph_3739 Modification methylase SPRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D Bsph_4487 Putative HTH-type transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D Bsph_2916 ybbB; YbbB, ABC-type Fe3+-hydroxamate transport system, periplasmic component K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D Bsph_0707 ybbB; ABC-type Fe3+-hydroxamate transport system, periplasmic component K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D Bsph_0701 ybbB; YbbB, ABC-type Fe3+-hydroxamate transport system, periplasmic component K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D Bsph_0702 ybbB; YbbB, ABC-type Fe3+-hydroxamate transport system, periplasmic component K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D Bsph_1734 transcriptional regulator, AraC/XylS family K13653 K13653; AraC family transcriptional regulator
D Bsph_2494 ydeE; transcriptional regulator (AraC/XylS family) K13653 K13653; AraC family transcriptional regulator
D Bsph_3223 Right origin-binding protein K13653 K13653; AraC family transcriptional regulator
D Bsph_4473 transcriptional regulator (AraC/XylS family) K13653 K13653; AraC family transcriptional regulator
D Bsph_2931 adaA; methylphosphotriester-DNA alkyltransferase / transcriptional regulator (AraC family) K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D Bsph_1999 adaA; methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D Bsph_0550 gltC; GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D Bsph_3233 gltC; HTH-type transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D Bsph_1758 conserved hypothetical protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Bsph_0636 Putative HTH-type transcriptional regulator ycf30 K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Bsph_4675 ywfK; YwfK K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D Bsph_4676 ywfK; Putative HTH-type transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D Bsph_1649 Putative HTH-type transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Bsph_1022 sigma-E- and sigma-K-dependent transcriptional regulator K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D Bsph_1356 iolR; DNA-binding protein K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D Bsph_3705 yqzB; YqzB K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D Bsph_4200 Glucose-resistance amylase regulator (Catabolite control protein A, CcpA) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Bsph_3379 HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D Bsph_3898 transcriptional regulator (GntR family) K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Bsph_1255 yurK; Hypothetical transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Bsph_1616 ymfC; Hypothetical transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D Bsph_4133 gntR; transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Bsph_0020 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Bsph_2404 transcriptional regulator (GntR family) K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Bsph_4738 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Bsph_0780 ydeL; YdeL K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Bsph_4717 Gluconate operon transcriptional repressor (P28 protein) K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D Bsph_4063 ysiA; YsiA K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D Bsph_1852 transcriptional regulator, TetR family K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D Bsph_2591 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Bsph_2803 HTH transcriptional regulator TetR/AcrR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Bsph_1131 ydgC; YdgC K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D Bsph_1815 yxaF; Putative HTH-type transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
C Lrp/AsnC family
D Bsph_4514 lrpC; HTH-type transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bsph_2758 Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bsph_3049 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D Bsph_4050 gerE; Germination protein K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D Bsph_2169 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D Bsph_0398 Protease production regulatory protein hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D Bsph_1291 transcriptional regulator, MarR family K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D Bsph_0150 putative transcriptional regulator MarR family K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D Bsph_2061 regulatory protein, MarR K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D Bsph_3210 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Bsph_4049 ysmB; transcriptional regulator (MarR family) K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Bsph_4708 conserved hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Bsph_1667 glnR; HTH-type transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D Bsph_3650 regulatory protein, MerR K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D Bsph_2371 transcriptional regulator, MarR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D Bsph_3517 Multidrug-efflux transporter 1 regulator K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
C Fur family
D Bsph_1708 Ferric uptake regulation protein (Ferric uptake regulator) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Bsph_3672 Transcriptional regulator ZurR (Zinc uptake regulator) K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D Bsph_0335 Peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D Bsph_1498 kdgR; Transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D Bsph_3037 Regulatory protein nsr K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D Bsph_4419 nsrR; HTH-type transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D Bsph_3885 yrzC; Putative HTH-type transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D Bsph_2624 conserved hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Bsph_2990 conserved hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Bsph_4334 hypothetical protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Bsph_0025 yozA; YozA K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D Bsph_1196 transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D Bsph_3463 ydcN; Putative HTH-type transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D Bsph_2884 transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D Bsph_4704 conserved hypothetical protein K10947 K10947; PadR family transcriptional regulator
D Bsph_1986 transcription regulator (putative) K10947 K10947; PadR family transcriptional regulator
C Other families
D Bsph_4331 mntR; Transcriptional regulator mntR (Manganese transport regulator) K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Bsph_3222 conserved hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Bsph_1983 birA; Bifunctional protein birA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Bsph_0342 Transcriptional activator nprA K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D Bsph_3029 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D Bsph_0066 Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D Bsph_0515 conserved hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D Bsph_0380 conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D Bsph_0621 transcriptional regulator (NtrC/NifA family) K06714 rocR; arginine utilization regulatory protein
D Bsph_1129 rocR; Arginine utilization regulatory protein K06714 rocR; arginine utilization regulatory protein
D Bsph_0129 Redox-sensing transcriptional repressor rex K01926 rex; redox-sensing transcriptional repressor
D Bsph_1546 GTP-sensing transcriptional pleiotropic repressor codY K03706 codY; transcriptional pleiotropic repressor
D Bsph_4161 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D Bsph_2375 transcriptional regulator, Cro/CI family K07727 K07727; putative transcriptional regulator
D Bsph_2297 predicted transcriptional regulator K07727 K07727; putative transcriptional regulator
D Bsph_3551 conserved hypothetical protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D Bsph_4301 conserved hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
C Others
D Bsph_0027 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Bsph_2222 conserved hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Bsph_0919 conserved hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Bsph_2896 Purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Bsph_1808 conserved hypothetical protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D Bsph_2006 possible transcriptional regulator from leucine-rich protein (LRPR) family K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D Bsph_0057 abrB; Transition state regulatory protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Bsph_p113 abrB; Transition state regulatory protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Bsph_0076 Stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D Bsph_4776 Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Bsph_4778 Protein yyaA K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Bsph_0240 Glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D Bsph_3507 Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D Bsph_3800 Heat-inducible transcription repressor hrcA K03705 hrcA; heat-inducible transcriptional repressor
D Bsph_4652 ctsR; Transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D Bsph_0463 Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D Bsph_1931 mtrB; Transcription attenuation protein mtrB (Tryptophan RNA-binding attenuator protein) (Trp RNA-binding attenuation protein) (TRAP) K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D Bsph_1459 PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Bsph_0949 conserved hypothetical protein K06314 rsfA; prespore-specific regulator
D Bsph_1421 conserved hypothetical protein K06314 rsfA; prespore-specific regulator
D Bsph_2056 conserved hypothetical protein K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D Bsph_2658 Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator
D Bsph_4283 Hypothetical yteA protein K06204 dksA; RNA polymerase-binding transcription factor
D Bsph_4106 Transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR
D Bsph_1178 comK; competence transcription factor (CTF) K02250 comK; competence protein ComK
D Bsph_1180 transcription regulator K02250 comK; competence protein ComK
D Bsph_1425 Protein mraZ K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0