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Transfer RNA Biogenesis - Legionella waltersii
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D SAMEA4504053_3378 rna; ribonuclease, T2 family K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D SAMEA4504053_3248 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SAMEA4504053_1356 gltX; glutamate tRNA synthetase catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SAMEA4504053_1017 proS; prolyl-tRNA synthase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SAMEA4504053_1273 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SAMEA4504053_1525 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SAMEA4504053_3412 metG; methionyl tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SAMEA4504053_1498 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SAMEA4504053_2279 argS; arginyl tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SAMEA4504053_1966 lysU; lysyl-tRNA synthetase, class II K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SAMEA4504053_1713 aspS; aspartyl tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D SAMEA4504053_1986 alaS_1; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SAMEA4504053_2520 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SAMEA4504053_3221 thrS; threonyl tRNA synthase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SAMEA4504053_0808 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SAMEA4504053_1499 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SAMEA4504053_1034 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SAMEA4504053_1777 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SAMEA4504053_3217 pheS; phenylalanyl tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SAMEA4504053_3216 pheT; Phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SAMEA4504053_0899 tyrS; tyrosyl tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SAMEA4504053_1622 trpS; tryptophanyl tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D SAMEA4504053_2043 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D SAMEA4504053_3266 HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D SAMEA4504053_0785 yggH; tRNA (m7G46) methyltransferase, SAM-dependent K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D SAMEA4504053_1494 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SAMEA4504053_3270 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D SAMEA4504053_0103 truD; hydrogenase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D SAMEA4504053_1930 iscS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D SAMEA4504053_3486 sUA5; putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SAMEA4504053_3196 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SAMEA4504053_3512 mnmE; GTP binding protein in thiophene and furan oxidation (GTPase) K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SAMEA4504053_3419 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D SAMEA4504053_3515 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D SAMEA4504053_3476 rnsT; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D SAMEA4504053_2259 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D SAMEA4504053_3378 rna; ribonuclease, T2 family K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D SAMEA4504053_3248 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D SAMEA4504053_1024 ABC transporter, ABC binding protein K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SAMEA4504053_1525 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SAMEA4504053_1017 proS; prolyl-tRNA synthase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D SAMEA4504053_0899 tyrS; tyrosyl tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SAMEA4504053_1622 trpS; tryptophanyl tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SAMEA4504053_3221 thrS; threonyl tRNA synthase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SAMEA4504053_1273 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SAMEA4504053_1966 lysU; lysyl-tRNA synthetase, class II K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SAMEA4504053_1986 alaS_1; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SAMEA4504053_1034 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SAMEA4504053_3412 metG; methionyl tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SAMEA4504053_0808 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SAMEA4504053_1713 aspS; aspartyl tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SAMEA4504053_2039 glyQ; glycyl tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SAMEA4504053_2038 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SAMEA4504053_1499 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SAMEA4504053_1356 gltX; glutamate tRNA synthetase catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SAMEA4504053_1498 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SAMEA4504053_2279 argS; arginyl tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SAMEA4504053_3217 pheS; phenylalanyl tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SAMEA4504053_3216 pheT; Phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SAMEA4504053_1777 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SAMEA4504053_2520 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D SAMEA4504053_2043 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
D SAMEA4504053_0440 guaD; cytidine/deoxycytidylate deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D SAMEA4504053_1905 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D SAMEA4504053_1888 dus_1; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D SAMEA4504053_3389 dus_2; nitrogen regulation protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D SAMEA4504053_1511 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D SAMEA4504053_0785 yggH; tRNA (m7G46) methyltransferase, SAM-dependent K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SAMEA4504053_0714 trmD; tRNA (guanine N1) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SAMEA4504053_3512 mnmE; GTP binding protein in thiophene and furan oxidation (GTPase) K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SAMEA4504053_1931 trmJ; RNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D SAMEA4504053_3056 trmL; RNA methyltransferase TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
C Psudouridine synthases
D SAMEA4504053_1494 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SAMEA4504053_3270 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D SAMEA4504053_0103 truD; hydrogenase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D SAMEA4504053_1562 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SAMEA4504053_1019 ttcA; C32 tRNA thiolase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D SAMEA4504053_1928 iscA; HesB family protein K13628 iscA; iron-sulfur cluster assembly protein
D SAMEA4504053_1930 iscS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SAMEA4504053_1807 ygfZ; glycine cleavage T protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D SAMEA4504053_3419 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SAMEA4504053_3196 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SAMEA4504053_1784 tRNA-(ms(2)io(6)a)-hydrolase(tRNA hydroxylase) K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D SAMEA4504053_1764 mnmC; putative peptidase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D SAMEA4504053_2247 queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SAMEA4504053_3416 queC; ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D SAMEA4504053_3393 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D SAMEA4504053_2295 nrdG; Organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SAMEA4504053_1446 queF; GTP cyclohydrolase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SAMEA4504053_3246 Diacylglucosamine hydrolase like protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D SAMEA4504053_2246 tgt_1; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SAMEA4504053_3234 tgt_2; queuine/archaeosine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SAMEA4504053_1114 tilS; cell cycle protein MesJ K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SAMEA4504053_1347 glycoprotease (O-sialoglycoprotein endopeptidase) K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SAMEA4504053_3486 sUA5; putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SAMEA4504053_2595 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D SAMEA4504053_3199 ATPase or kinase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C SAMEA4504053_0035 vacB; Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C SAMEA4504053_3268 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024