+D GENES KO
#
KEGG Orthology (KO) - Lysobacter yananisis
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:lya00010]
D RDV84_07700 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_14490 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_18535 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_16705 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RDV84_02275 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RDV84_07140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RDV84_01695 class I fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RDV84_21410 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RDV84_01795 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RDV84_01735 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RDV84_05245 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RDV84_24750 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RDV84_01710 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RDV84_18020 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RDV84_09415 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RDV84_03115 dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_09090 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RDV84_04465 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RDV84_03150 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RDV84_05755 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RDV84_05345 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RDV84_11865 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D RDV84_01185 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:lya00020]
D RDV84_01935 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RDV84_20775 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RDV84_20760 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RDV84_06680 icd; isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RDV84_23995 isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D RDV84_18765 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RDV84_18760 sucB; dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_12435 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RDV84_12430 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RDV84_17250 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RDV84_17255 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RDV84_17240 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RDV84_17245 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RDV84_17145 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D RDV84_18800 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RDV84_14200 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RDV84_20300 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D RDV84_01185 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RDV84_09415 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RDV84_03115 dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:lya00030]
D RDV84_16705 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RDV84_07545 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RDV84_18540 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RDV84_07550 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D RDV84_18530 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D RDV84_11230 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RDV84_11605 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RDV84_01855 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RDV84_08955 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RDV84_02145 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D RDV84_05600 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D RDV84_01375 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D RDV84_05345 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RDV84_13875 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RDV84_07555 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D RDV84_07565 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RDV84_09140 GMC family oxidoreductase K19813 gdh; glucose dehydrogenase [EC:1.1.5.9]
D RDV84_21475 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RDV84_01695 class I fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RDV84_07140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RDV84_02275 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:lya00040]
D RDV84_18860 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RDV84_17830 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RDV84_11605 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RDV84_10165 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00051 Fructose and mannose metabolism [PATH:lya00051]
D RDV84_04785 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RDV84_11870 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RDV84_05345 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RDV84_11815 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RDV84_02275 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RDV84_07140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RDV84_01695 class I fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RDV84_21410 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RDV84_11810 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D RDV84_00825 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:lya00052]
D RDV84_13590 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_17410 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_19910 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_19995 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_17830 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RDV84_05345 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RDV84_07700 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_14490 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_18535 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_02275 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RDV84_14510 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D RDV84_10110 2-dehydro-3-deoxygalactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D RDV84_04945 alpha-amylase family glycosyl hydrolase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RDV84_14525 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RDV84_14520 SIS domain-containing protein K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:lya00053]
D RDV84_18860 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RDV84_05690 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RDV84_10165 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00500 Starch and sucrose metabolism [PATH:lya00500]
D RDV84_04945 alpha-amylase family glycosyl hydrolase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RDV84_14525 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RDV84_17830 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RDV84_07810 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RDV84_19750 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RDV84_20040 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D RDV84_14485 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D RDV84_18590 pgmB; beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D RDV84_20455 isoamylase K01214 ISA; isoamylase [EC:3.2.1.68]
D RDV84_12925 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D RDV84_05345 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RDV84_07700 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_14490 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_18535 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_16705 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RDV84_04785 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:lya00520]
D RDV84_04360 glycosyl hydrolase family 18 protein K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D RDV84_01065 glycosyl hydrolase family 18 protein K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D RDV84_23520 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RDV84_07690 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RDV84_20855 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RDV84_14515 ROK family protein K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D RDV84_07530 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D RDV84_14500 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D RDV84_04785 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RDV84_07535 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_20985 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_02990 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_21435 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RDV84_03035 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RDV84_05310 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D RDV84_22970 phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D RDV84_00625 phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D RDV84_00630 nucleotidyltransferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D RDV84_00755 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RDV84_23355 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RDV84_20930 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D RDV84_20935 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D RDV84_17445 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D RDV84_07700 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_14490 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_18535 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_05345 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RDV84_17830 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RDV84_18860 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RDV84_13590 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_17410 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_19910 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_19995 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_05690 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RDV84_00825 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RDV84_16705 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RDV84_11870 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RDV84_11815 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RDV84_11810 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
C 00620 Pyruvate metabolism [PATH:lya00620]
D RDV84_05755 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RDV84_09415 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RDV84_03115 dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_04465 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RDV84_09090 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RDV84_03150 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RDV84_01710 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RDV84_15785 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RDV84_02675 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RDV84_02680 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RDV84_21440 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RDV84_13780 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D RDV84_12485 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D RDV84_23970 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RDV84_21475 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RDV84_09375 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RDV84_14200 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RDV84_20300 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D RDV84_17145 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D RDV84_18800 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RDV84_09080 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RDV84_01185 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RDV84_18020 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RDV84_05495 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_02445 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:lya00630]
D RDV84_05490 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D RDV84_05755 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RDV84_05495 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D RDV84_14200 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RDV84_01935 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RDV84_20775 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RDV84_20760 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_09345 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RDV84_23010 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RDV84_23020 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RDV84_11725 (Fe-S)-binding protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D RDV84_07495 catalase family peroxidase K03781 katE; catalase [EC:1.11.1.6]
D RDV84_14360 catalase K03781 katE; catalase [EC:1.11.1.6]
D RDV84_16405 catalase K03781 katE; catalase [EC:1.11.1.6]
D RDV84_21475 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RDV84_01730 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RDV84_07760 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RDV84_12175 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RDV84_24445 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RDV84_01295 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_01285 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D RDV84_19375 TIM barrel protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D RDV84_00955 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D RDV84_03740 HAD family hydrolase K26210 E3.1.3.109; ribulose-1,5-bisphosphate 5-phosphatase [EC:3.1.3.109]
D RDV84_07565 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RDV84_24820 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:lya00640]
D RDV84_05755 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RDV84_00080 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D RDV84_11500 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RDV84_11495 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RDV84_17220 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RDV84_11485 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_18740 YhdH/YhfP family quinone oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_15785 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RDV84_02675 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RDV84_02680 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RDV84_21440 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RDV84_12430 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RDV84_12435 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RDV84_03575 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RDV84_00065 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D RDV84_25505 bifunctional 2-methylcitrate dehydratase/aconitate hydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D RDV84_20760 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RDV84_00070 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:lya00650]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_17860 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_16095 enoyl-CoA hydratase-related protein K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D RDV84_03760 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D RDV84_18125 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D RDV84_18120 phaE; class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE K22881 phaE; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaE
D RDV84_24950 phaZ; polyhydroxyalkanoate depolymerase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D RDV84_09345 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RDV84_23010 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RDV84_23020 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RDV84_17250 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RDV84_17255 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RDV84_17240 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RDV84_17245 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RDV84_22375 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RDV84_11880 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RDV84_11885 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RDV84_00455 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D RDV84_18110 3-hydroxybutyrate oligomer hydrolase family protein K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22]
D RDV84_23415 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RDV84_02425 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RDV84_02430 ACT domain-containing protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:lya00660]
D RDV84_23415 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RDV84_02425 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RDV84_02430 ACT domain-containing protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D RDV84_12430 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RDV84_12435 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RDV84_02450 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RDV84_02455 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RDV84_02460 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:lya00562]
D RDV84_22485 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D RDV84_24425 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D RDV84_15215 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RDV84_08650 phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]
D RDV84_01090 phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]
D RDV84_03575 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RDV84_21410 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:lya00190]
D RDV84_21395 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RDV84_21390 NADH-quinone oxidoreductase subunit B family protein K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RDV84_21385 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RDV84_21380 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RDV84_21375 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RDV84_21370 nuoF; NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RDV84_21365 nuoG; NADH-quinone oxidoreductase subunit NuoG K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RDV84_21360 nuoH; NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RDV84_21355 nuoI; NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RDV84_21350 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RDV84_21345 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RDV84_21340 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RDV84_21335 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RDV84_21330 nuoN; NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RDV84_08950 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RDV84_17250 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RDV84_17255 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RDV84_17240 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RDV84_17245 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RDV84_14740 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RDV84_14745 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RDV84_14750 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RDV84_05135 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RDV84_20435 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D RDV84_05160 cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D RDV84_05175 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D RDV84_05180 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D RDV84_05165 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D RDV84_05140 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RDV84_20430 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D RDV84_20425 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D RDV84_20420 cyoA; ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D RDV84_08685 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RDV84_03275 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RDV84_08690 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RDV84_03270 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RDV84_03265 cydX; cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D RDV84_12725 c-type cytochrome K08738 CYC; cytochrome c
D RDV84_03060 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RDV84_03050 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RDV84_03055 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RDV84_03065 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RDV84_03045 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RDV84_03080 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RDV84_03070 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RDV84_03075 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RDV84_02340 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D RDV84_24025 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RDV84_13810 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:lya00680]
D RDV84_09090 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RDV84_09100 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D RDV84_12175 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RDV84_24750 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RDV84_09080 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RDV84_14200 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RDV84_01695 class I fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RDV84_07140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RDV84_02275 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RDV84_05755 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RDV84_18020 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RDV84_05245 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RDV84_25405 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RDV84_17540 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:lya00910]
D RDV84_05455 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D RDV84_18915 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RDV84_07760 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RDV84_06140 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RDV84_06145 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RDV84_17360 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D RDV84_19005 can; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D RDV84_22260 carbonic anhydrase family protein K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:lya00920]
D RDV84_08460 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D RDV84_08455 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D RDV84_08450 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D RDV84_08445 sulfate/molybdate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D RDV84_00580 cysN; sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D RDV84_00585 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RDV84_13270 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RDV84_00605 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D RDV84_10440 molybdopterin oxidoreductase family protein K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6]
D RDV84_10430 4Fe-4S dicluster domain-containing protein K21308 soeB; sulfite dehydrogenase (quinone) subunit SoeB
D RDV84_10425 DmsC/YnfH family molybdoenzyme membrane anchor subunit K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC
D RDV84_00555 sulfite reductase flavoprotein subunit alpha K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D RDV84_00590 assimilatory sulfite reductase (NADPH) flavoprotein subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D RDV84_00600 cysI; assimilatory sulfite reductase (NADPH) hemoprotein subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D RDV84_16115 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RDV84_08305 pyridoxal-phosphate dependent enzyme K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RDV84_00620 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RDV84_01680 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RDV84_18245 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RDV84_01085 homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RDV84_01080 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RDV84_14995 acyl-CoA dehydrogenase C-terminal domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:lya00061]
D RDV84_15785 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RDV84_02675 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RDV84_02680 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RDV84_21440 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RDV84_08505 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D RDV84_21640 acyl carrier protein K02078 acpP; acyl carrier protein
D RDV84_22815 acyl carrier protein K02078 acpP; acyl carrier protein
D RDV84_23630 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RDV84_10930 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D RDV84_23640 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RDV84_14685 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RDV84_23650 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RDV84_08560 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RDV84_23625 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RDV84_08540 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_10555 3-oxoacyl-ACP reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_19060 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_21245 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_23635 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_15820 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RDV84_03760 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D RDV84_20810 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_03635 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:lya00071]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_17855 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_17860 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D RDV84_20555 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RDV84_01195 acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D RDV84_17205 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RDV84_20810 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_03635 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_09090 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RDV84_04465 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:lya00121]
D RDV84_21905 linear amide C-N hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:lya00561]
D RDV84_00955 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D RDV84_03150 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RDV84_02480 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RDV84_05975 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RDV84_11400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RDV84_13345 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D RDV84_19180 wax ester/triacylglycerol synthase family O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75]
D RDV84_22010 lipase family protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D RDV84_00935 triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D RDV84_21770 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00564 Glycerophospholipid metabolism [PATH:lya00564]
D RDV84_08255 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RDV84_02470 glpD; glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D RDV84_05975 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RDV84_11400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RDV84_13345 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D RDV84_22485 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D RDV84_24425 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D RDV84_17155 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D RDV84_17045 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RDV84_24190 methyltransferase domain-containing protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D RDV84_15845 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RDV84_02720 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RDV84_11990 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RDV84_18115 CDP-alcohol phosphatidyltransferase family protein K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RDV84_21495 asd; archaetidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RDV84_17325 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RDV84_02755 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RDV84_11700 haloacid dehalogenase-like hydrolase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D RDV84_04585 phospholipase D-like domain-containing protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D RDV84_06965 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D RDV84_12885 phospholipase D-like domain-containing protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D RDV84_02790 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:lya00565]
D RDV84_17155 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D RDV84_22485 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D RDV84_24425 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:lya00600]
D RDV84_20410 aminotransferase class V-fold PLP-dependent enzyme K01634 SGPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27]
D RDV84_07690 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RDV84_20855 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism [PATH:lya00590]
D RDV84_17155 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D RDV84_10560 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
C 00591 Linoleic acid metabolism
D RDV84_17155 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:lya00592]
D RDV84_17155 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D RDV84_17855 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:lya01040]
D RDV84_05815 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RDV84_25115 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RDV84_11155 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D RDV84_11150 ferredoxin reductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase
D RDV84_03210 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D RDV84_24215 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:lya00230]
D RDV84_13595 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D RDV84_05345 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RDV84_13875 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RDV84_25375 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RDV84_02775 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RDV84_00740 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RDV84_24270 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D RDV84_12055 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D RDV84_00665 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RDV84_14785 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RDV84_14780 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RDV84_11595 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RDV84_18795 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RDV84_02105 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RDV84_02110 adenylosuccinate lyase family protein K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RDV84_02760 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RDV84_13515 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RDV84_09435 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RDV84_18940 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RDV84_24710 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RDV84_12465 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RDV84_23515 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RDV84_17950 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RDV84_17870 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RDV84_02030 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RDV84_05885 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RDV84_16885 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RDV84_17955 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RDV84_22925 nucleoside deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D RDV84_02010 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RDV84_10890 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RDV84_01755 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RDV84_01765 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RDV84_02000 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RDV84_11210 HD domain-containing protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RDV84_24030 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RDV84_13130 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D RDV84_23525 CYTH domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D RDV84_24605 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RDV84_10585 carbohydrate kinase family protein K00856 ADK; adenosine kinase [EC:2.7.1.20]
D RDV84_06400 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D RDV84_09275 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D RDV84_14830 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D RDV84_02270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RDV84_13275 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RDV84_00580 cysN; sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D RDV84_00585 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:lya00240]
D RDV84_21010 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RDV84_21020 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RDV84_00850 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RDV84_22940 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RDV84_23350 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RDV84_05335 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RDV84_12150 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D RDV84_15875 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RDV84_17870 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RDV84_13275 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RDV84_15700 Maf family protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RDV84_21780 DUF45 domain-containing protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D RDV84_24770 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RDV84_17795 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RDV84_09435 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RDV84_18940 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RDV84_24710 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RDV84_15135 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RDV84_14830 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D RDV84_10535 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D RDV84_16775 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RDV84_10890 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RDV84_01755 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RDV84_01765 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RDV84_23610 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RDV84_05350 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RDV84_06065 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D RDV84_13385 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RDV84_02555 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:lya00250]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RDV84_01410 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D RDV84_13755 asparaginase domain-containing protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RDV84_08110 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D RDV84_15950 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RDV84_17225 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RDV84_23085 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RDV84_18435 amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D RDV84_09330 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RDV84_20680 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RDV84_22890 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RDV84_22860 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RDV84_24605 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RDV84_18795 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RDV84_02105 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RDV84_02110 adenylosuccinate lyase family protein K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RDV84_00850 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RDV84_06140 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RDV84_06145 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RDV84_18915 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RDV84_05185 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RDV84_07760 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RDV84_21010 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RDV84_21020 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RDV84_07535 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_20985 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_02990 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_25375 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:lya00260]
D RDV84_02395 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RDV84_14260 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D RDV84_21470 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RDV84_01075 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RDV84_02400 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D RDV84_02405 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RDV84_12175 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RDV84_21475 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RDV84_05245 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RDV84_00955 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D RDV84_25405 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RDV84_17540 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RDV84_21645 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RDV84_25460 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RDV84_25455 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D RDV84_24445 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RDV84_01295 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_01285 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D RDV84_11990 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RDV84_18115 CDP-alcohol phosphatidyltransferase family protein K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RDV84_11780 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D RDV84_11785 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RDV84_01030 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RDV84_07425 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RDV84_02440 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RDV84_10120 amino acid deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D RDV84_07190 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RDV84_21445 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RDV84_21450 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RDV84_21615 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
C 00270 Cysteine and methionine metabolism [PATH:lya00270]
D RDV84_08305 pyridoxal-phosphate dependent enzyme K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RDV84_00620 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RDV84_01680 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RDV84_11785 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RDV84_03320 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RDV84_11780 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D RDV84_18895 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RDV84_18900 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RDV84_01785 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RDV84_01430 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RDV84_11715 speD; adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D RDV84_05395 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D RDV84_12465 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RDV84_22980 TRZ/ATZ family hydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D RDV84_23510 S-methyl-5'-thioinosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D RDV84_18645 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D RDV84_22520 methylthioribulose 1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D RDV84_22530 mtnC; acireductone synthase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D RDV84_22525 acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D RDV84_02915 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D RDV84_01460 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RDV84_02395 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RDV84_14260 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D RDV84_21470 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RDV84_01075 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RDV84_18245 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RDV84_01085 homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RDV84_01080 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RDV84_01520 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_02435 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_04905 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RDV84_13185 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RDV84_16115 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RDV84_07190 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RDV84_14200 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RDV84_01030 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RDV84_25405 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RDV84_17540 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:lya00280]
D RDV84_01520 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_02435 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_22255 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D RDV84_11500 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RDV84_11495 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RDV84_17220 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RDV84_11485 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_20555 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RDV84_22265 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_17855 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RDV84_05380 NAD(P)-dependent oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D RDV84_03555 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D RDV84_03575 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RDV84_22365 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D RDV84_22290 carboxyl transferase domain-containing protein K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D RDV84_22355 enoyl-CoA hydratase-related protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D RDV84_22375 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RDV84_11880 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RDV84_11885 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:lya00290]
D RDV84_07425 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RDV84_02440 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RDV84_02450 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RDV84_02455 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RDV84_02460 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RDV84_23415 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RDV84_02425 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RDV84_02430 ACT domain-containing protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D RDV84_02420 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RDV84_02415 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RDV84_01520 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_02435 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_22255 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D RDV84_09330 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RDV84_02445 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:lya00300]
D RDV84_01075 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RDV84_02395 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RDV84_14260 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D RDV84_21470 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RDV84_14390 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RDV84_16655 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RDV84_21025 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RDV84_15925 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RDV84_02220 acetylornithine/succinyldiaminopimelate transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RDV84_15940 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RDV84_10490 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RDV84_09220 pyridoxal phosphate-dependent aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D RDV84_12310 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RDV84_12315 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:lya00310]
D RDV84_23315 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D RDV84_18760 sucB; dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_17205 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_07190 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
C 00220 Arginine biosynthesis [PATH:lya00220]
D RDV84_22895 N-acetylornithine carbamoyltransferase K09065 argF; N-acetylornithine carbamoyltransferase [EC:2.1.3.9]
D RDV84_22890 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RDV84_22860 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RDV84_11425 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RDV84_16520 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RDV84_07760 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RDV84_18915 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RDV84_09330 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RDV84_04490 arsN2; arsenic resistance N-acetyltransferase ArsN2 K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D RDV84_22880 acetylglutamate kinase K22478 K22478; bifunctional N-acetylglutamate synthase/kinase [EC:2.3.1.1 2.7.2.8]
D RDV84_22870 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D RDV84_02220 acetylornithine/succinyldiaminopimelate transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RDV84_22885 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:lya00330]
D RDV84_10535 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D RDV84_05390 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D RDV84_09515 agmatine deiminase family protein K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D RDV84_17775 carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D RDV84_05395 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D RDV84_11715 speD; adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D RDV84_24970 speG; spermidine N1-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D RDV84_14130 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RDV84_07050 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D RDV84_17840 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D RDV84_11425 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RDV84_16520 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RDV84_00920 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RDV84_05185 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RDV84_22855 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RDV84_22850 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D RDV84_13560 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RDV84_15620 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RDV84_22250 2OG-Fe(II) oxygenase K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:lya00340]
D RDV84_22590 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D RDV84_22555 hisIE; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D RDV84_22565 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D RDV84_22570 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D RDV84_22560 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D RDV84_22575 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D RDV84_17550 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_22580 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_22585 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D RDV84_22610 aromatic amino acid lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D RDV84_25250 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D RDV84_25290 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D RDV84_25285 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D RDV84_24820 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00350 Tyrosine metabolism [PATH:lya00350]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RDV84_17550 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_22580 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_11535 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RDV84_07075 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D RDV84_11545 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D RDV84_11755 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D RDV84_07080 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RDV84_11750 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D RDV84_07040 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D RDV84_09090 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RDV84_04465 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RDV84_01625 fumarylacetoacetate hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:lya00360]
D RDV84_07270 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D RDV84_07040 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RDV84_17550 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_22580 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_11535 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RDV84_24840 FAD-dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D RDV84_03215 D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D RDV84_12720 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D RDV84_16395 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D RDV84_14130 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RDV84_00505 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D RDV84_07065 FAD-dependent oxidoreductase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
C 00380 Tryptophan metabolism [PATH:lya00380]
D RDV84_11520 tryptophan 2,3-dioxygenase family protein K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]
D RDV84_18975 NAD(P)/FAD-dependent oxidoreductase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9]
D RDV84_03685 NAD(P)/FAD-dependent oxidoreductase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9]
D RDV84_18980 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3]
D RDV84_18995 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
D RDV84_18990 amidohydrolase family protein K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
D RDV84_19010 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D RDV84_19000 RidA family protein K15067 amnD; 2-aminomuconate deaminase [EC:3.5.99.5]
D RDV84_18760 sucB; dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_17205 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_14130 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RDV84_07495 catalase family peroxidase K03781 katE; catalase [EC:1.11.1.6]
D RDV84_14360 catalase K03781 katE; catalase [EC:1.11.1.6]
D RDV84_16405 catalase K03781 katE; catalase [EC:1.11.1.6]
D RDV84_12720 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D RDV84_16395 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:lya00400]
D RDV84_14120 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RDV84_00970 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RDV84_22540 type II 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D RDV84_02670 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D RDV84_08425 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D RDV84_00965 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RDV84_17555 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D RDV84_21480 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RDV84_11620 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RDV84_11680 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D RDV84_11685 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D RDV84_21455 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D RDV84_11695 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D RDV84_21445 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RDV84_21450 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RDV84_17920 aroQ; gamma subclass chorismate mutase AroQ K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D RDV84_17545 pheA; prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RDV84_17550 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_22580 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_07270 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D RDV84_08500 pteridine-dependent deoxygenase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:lya00410]
D RDV84_16700 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RDV84_03625 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D RDV84_16695 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_03575 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:lya00430]
D RDV84_07655 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RDV84_15115 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RDV84_20680 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RDV84_03625 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D RDV84_18915 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
D RDV84_00730 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
C 00450 Selenocompound metabolism [PATH:lya00450]
D RDV84_01080 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RDV84_03320 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RDV84_18895 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RDV84_18900 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RDV84_01785 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RDV84_11785 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RDV84_00495 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D RDV84_20685 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RDV84_00580 cysN; sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D RDV84_00585 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RDV84_16755 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:lya00460]
D RDV84_07810 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RDV84_19750 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RDV84_07655 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RDV84_15115 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RDV84_13755 asparaginase domain-containing protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RDV84_08110 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D RDV84_12175 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:lya00470]
D RDV84_19165 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RDV84_12340 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RDV84_07190 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RDV84_24545 DUF1611 domain-containing protein K26272 dgcN; D-glutamate N-acetyltransferase [EC:2.3.1.312]
D RDV84_10200 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D RDV84_24530 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D RDV84_01410 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D RDV84_10120 amino acid deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D RDV84_10490 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RDV84_14260 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D RDV84_10140 4-hydroxyproline epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D RDV84_10155 FAD-dependent oxidoreductase K22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-]
D RDV84_10145 FAD-dependent oxidoreductase K21061 lhpB; D-hydroxyproline dehydrogenase subunit beta [EC:1.5.99.-]
D RDV84_10150 2Fe-2S iron-sulfur cluster-binding protein K22550 lhpD; D-hydroxyproline dehydrogenase subunit gamma
D RDV84_10160 dihydrodipicolinate synthase family protein K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]
D RDV84_10165 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D RDV84_24840 FAD-dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D RDV84_03215 D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:lya00480]
D RDV84_07655 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RDV84_15115 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RDV84_16805 5-oxoprolinase subunit PxpA K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D RDV84_16840 biotin-dependent carboxyltransferase family protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D RDV84_21805 carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D RDV84_04905 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RDV84_13185 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RDV84_10850 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RDV84_12020 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RDV84_25080 M1 family metallopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RDV84_09400 glutathione S-transferase C-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_11120 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_11160 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_16925 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_16975 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_17215 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_00055 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_04275 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_24835 gorA; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D RDV84_06680 icd; isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RDV84_11230 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RDV84_07545 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RDV84_18540 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RDV84_17090 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D RDV84_18845 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D RDV84_18725 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D RDV84_05395 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:lya00511]
D RDV84_07690 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RDV84_20855 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RDV84_20845 glycoside hydrolase family 2 protein K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
D RDV84_08085 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D RDV84_08090 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D RDV84_20885 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase K01444 AGA; N4-(beta-N-acetylglucosaminyl)-L-asparaginase [EC:3.5.1.26]
C 00540 Lipopolysaccharide biosynthesis [PATH:lya00540]
D RDV84_15815 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RDV84_12360 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RDV84_15825 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RDV84_25345 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RDV84_15805 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RDV84_17305 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RDV84_00765 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RDV84_24760 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RDV84_00770 HAD hydrolase family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D RDV84_17310 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RDV84_02520 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RDV84_04820 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RDV84_02525 lpxL; LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RDV84_12170 lpxO; lipid A hydroxylase LpxO K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D RDV84_10265 lipid A deacylase LpxR family protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-]
D RDV84_08840 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D RDV84_23925 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D RDV84_04850 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:lya00541]
D RDV84_17830 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RDV84_13590 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_17410 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_19910 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_19995 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RDV84_18860 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RDV84_05690 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RDV84_14570 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RDV84_14565 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RDV84_14575 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RDV84_14580 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RDV84_11870 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RDV84_11815 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RDV84_11810 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D RDV84_03035 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RDV84_20930 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D RDV84_20935 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D RDV84_17445 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:lya00550]
D RDV84_00755 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RDV84_23355 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RDV84_12335 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RDV84_14270 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K23169 murD2; UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53]
D RDV84_14265 murL; UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase K23170 murL; UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase [EC:5.1.1.23]
D RDV84_12310 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RDV84_12340 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RDV84_12315 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RDV84_15850 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RDV84_07755 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RDV84_24075 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RDV84_12320 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RDV84_12330 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RDV84_01140 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RDV84_01920 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RDV84_13145 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RDV84_18700 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RDV84_21585 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RDV84_10605 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RDV84_12305 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RDV84_10740 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RDV84_24300 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:lya00552]
D RDV84_07755 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RDV84_24075 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RDV84_21770 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:lya00543]
D RDV84_23050 MBOAT family O-acyltransferase K19294 algI; alginate O-acetyltransferase complex protein AlgI
D RDV84_20055 undecaprenyl-phosphate glucose phosphotransferase K20997 pslA; polysaccharide biosynthesis protein PslA
D RDV84_07980 glycosyltransferase family 1 protein K21002 pslI; polysaccharide biosynthesis protein PslI
D RDV84_22720 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:lya00730]
D RDV84_02370 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D RDV84_16630 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RDV84_19150 FAD-dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D RDV84_14975 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RDV84_01600 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D RDV84_02200 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RDV84_12235 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D RDV84_09335 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RDV84_11095 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_24930 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_02270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:lya00740]
D RDV84_12220 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RDV84_12200 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RDV84_10855 HAD family hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D RDV84_12225 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RDV84_12215 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RDV84_16190 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RDV84_13595 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:lya00750]
D RDV84_00950 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D RDV84_17540 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RDV84_13425 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D RDV84_06955 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D RDV84_02405 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:lya00760]
D RDV84_14770 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D RDV84_09435 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RDV84_18940 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RDV84_24710 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RDV84_25170 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase K13522 K13522; bifunctional NMN adenylyltransferase/nudix hydrolase [EC:2.7.7.1 3.6.1.-]
D RDV84_15520 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RDV84_13275 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RDV84_02850 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RDV84_12450 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D RDV84_16530 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D RDV84_25175 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
D RDV84_11195 Sir2 family NAD-dependent protein deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D RDV84_18920 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RDV84_13615 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RDV84_13635 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RDV84_13640 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:lya00770]
D RDV84_23415 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RDV84_02425 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RDV84_02430 ACT domain-containing protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D RDV84_02420 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RDV84_02415 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RDV84_16690 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RDV84_16695 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RDV84_11410 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D RDV84_13275 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RDV84_15100 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RDV84_12385 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RDV84_05660 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D RDV84_21660 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D RDV84_01520 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_02435 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_16700 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:lya00780]
D RDV84_06170 bioC; malonyl-ACP O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D RDV84_08560 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RDV84_23625 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RDV84_08540 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_10555 3-oxoacyl-ACP reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_19060 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_21245 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_23635 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_15820 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RDV84_06175 bioH; pimeloyl-ACP methyl ester esterase BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D RDV84_06180 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D RDV84_13260 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D RDV84_02910 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D RDV84_11405 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:lya00785]
D RDV84_10765 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RDV84_10770 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_09415 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RDV84_03115 dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RDV84_18765 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RDV84_18760 sucB; dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RDV84_11500 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RDV84_11495 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RDV84_17220 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RDV84_11485 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RDV84_24445 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RDV84_01295 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RDV84_01285 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:lya00790]
D RDV84_06150 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RDV84_22960 folE2; GTP cyclohydrolase FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D RDV84_11095 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_24930 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_20405 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D RDV84_05070 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RDV84_16685 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RDV84_17415 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RDV84_24650 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RDV84_13395 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RDV84_25390 folC; bifunctional tetrahydrofolate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RDV84_12220 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RDV84_06450 pabB; aminodeoxychorismate synthase component I K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85]
D RDV84_23620 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D RDV84_02900 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RDV84_17715 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D RDV84_07270 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D RDV84_17420 SDR family oxidoreductase K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D RDV84_12715 queE; 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RDV84_12730 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RDV84_06640 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RDV84_23915 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RDV84_23905 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RDV84_23895 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RDV84_13820 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D RDV84_17910 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RDV84_10340 nucleotidyltransferase family protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D RDV84_17905 NTP transferase domain-containing protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:lya00670]
D RDV84_13395 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RDV84_17945 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RDV84_12175 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RDV84_00740 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RDV84_02760 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RDV84_04865 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RDV84_00105 formyltransferase family protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RDV84_01295 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RDV84_18895 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RDV84_18900 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RDV84_13385 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RDV84_01505 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RDV84_02135 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:lya00860]
D RDV84_25340 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RDV84_13850 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RDV84_02205 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RDV84_08440 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RDV84_10415 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RDV84_08230 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RDV84_00985 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RDV84_08675 hemF; oxygen-dependent coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D RDV84_18070 STM4012 family radical SAM protein K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D RDV84_24940 CopD family protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D RDV84_05920 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RDV84_08225 hypothetical protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D RDV84_00615 cysG; siroheme synthase CysG K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D RDV84_05135 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RDV84_05140 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RDV84_12530 cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D RDV84_13450 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RDV84_12525 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RDV84_12545 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D RDV84_12535 cbiB; adenosylcobinamide-phosphate synthase CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D RDV84_12540 cobD; threonine-phosphate decarboxylase CobD K02225 cobC1; cobalamin biosynthesis protein CobC
D RDV84_12550 cobU; bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D RDV84_12565 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D RDV84_12555 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D RDV84_12560 histidine phosphatase family protein K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D RDV84_19650 biliverdin-producing heme oxygenase K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D RDV84_20200 biliverdin-producing heme oxygenase K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D RDV84_18720 ferritin-like domain-containing protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
D RDV84_02880 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:lya00130]
D RDV84_08500 pteridine-dependent deoxygenase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
D RDV84_06220 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RDV84_22975 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RDV84_13460 ubiH; 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D RDV84_10550 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RDV84_13465 FAD-dependent oxidoreductase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D RDV84_11720 coq7; 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D RDV84_22495 demethoxyubiquinone hydroxylase family protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D RDV84_19230 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D RDV84_07575 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D RDV84_18715 NAD(P)H-dependent oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RDV84_24600 NAD(P)H-dependent oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RDV84_13765 wrbA; NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RDV84_01220 wrbA; NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RDV84_11535 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:lya00900]
D RDV84_14975 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RDV84_15840 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RDV84_24740 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D RDV84_13865 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RDV84_24735 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D RDV84_23405 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RDV84_16205 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_15755 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RDV84_14280 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RDV84_15850 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:lya00907]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_02240 NAD(P)-dependent oxidoreductase K13775 atuG; citronellol/citronellal dehydrogenase
D RDV84_22375 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RDV84_17855 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RDV84_01855 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:lya00523]
D RDV84_14570 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RDV84_14565 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RDV84_14575 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RDV84_14580 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:lya01054]
D RDV84_19885 amino acid adenylation domain-containing protein K16118 snbDE; pristinamycin I synthase 3 and 4
D RDV84_01410 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:lya01053]
D RDV84_19230 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D RDV84_19240 isochorismatase family protein K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D RDV84_19255 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D RDV84_06455 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D RDV84_19235 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D RDV84_08855 amino acid adenylation domain-containing protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01055 Biosynthesis of vancomycin group antibiotics [PATH:lya01055]
D RDV84_14565 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RDV84_22435 glycosyltransferase K16444 gtfB; vancomycin aglycone glucosyltransferase [EC:2.4.1.310]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:lya00946]
D RDV84_07810 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RDV84_19750 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:lya00311]
D RDV84_15945 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D RDV84_11035 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:lya00332]
D RDV84_22855 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RDV84_22850 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:lya00261]
D RDV84_14430 MbtH family protein K05375 mbtH; MbtH protein
D RDV84_00580 cysN; sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D RDV84_00585 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RDV84_02395 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RDV84_14260 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D RDV84_21470 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RDV84_14390 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RDV84_16655 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RDV84_21025 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:lya00521]
D RDV84_07700 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_14490 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_18535 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_05345 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RDV84_15215 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RDV84_14570 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RDV84_14565 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RDV84_14575 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RDV84_14580 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D RDV84_07700 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_14490 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RDV84_18535 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:lya00525]
D RDV84_14570 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RDV84_14565 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:lya00401]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RDV84_17550 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_22580 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D RDV84_11620 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RDV84_11680 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D RDV84_23640 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RDV84_08540 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_10555 3-oxoacyl-ACP reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_19060 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_21245 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_23635 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RDV84_08505 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D RDV84_21640 acyl carrier protein K02078 acpP; acyl carrier protein
D RDV84_22815 acyl carrier protein K02078 acpP; acyl carrier protein
D RDV84_23630 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RDV84_10930 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:lya00999]
D RDV84_01430 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RDV84_08425 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D RDV84_07810 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RDV84_19750 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites [PATH:lya00997]
D RDV84_09225 isocyanide synthase family protein K22952 pvcA; L-tyrosine isonitrile synthase [EC:4.1.99.24]
D RDV84_09230 TauD/TfdA family dioxygenase K22874 pvcB; L-tyrosine isonitrile desaturase/decarboxylase [EC:1.14.20.9 1.14.20.10]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:lya00362]
D RDV84_03225 pcaD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D RDV84_17855 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RDV84_19010 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D RDV84_08805 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RDV84_17860 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D RDV84_17205 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:lya00627]
D RDV84_14130 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RDV84_13780 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation [PATH:lya00364]
D RDV84_16855 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:lya00625]
D RDV84_04465 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RDV84_09090 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:lya00361]
D RDV84_16855 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:lya00623]
D RDV84_16855 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:lya00622]
D RDV84_19010 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D RDV84_08805 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:lya00633]
D RDV84_06860 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D RDV84_17855 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:lya00643]
D RDV84_07040 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D RDV84_07075 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D RDV84_11545 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D RDV84_11755 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D RDV84_07080 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RDV84_11750 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D RDV84_14130 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:lya00930]
D RDV84_23595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
D RDV84_08895 cupin domain-containing protein K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41]
C 00621 Dioxin degradation
D RDV84_08805 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:lya00626]
D RDV84_04465 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RDV84_09090 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:lya03020]
D RDV84_13950 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RDV84_13955 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RDV84_14105 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RDV84_02005 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:lya03010]
D RDV84_17800 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RDV84_15910 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RDV84_14015 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RDV84_14100 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RDV84_14070 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RDV84_19105 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RDV84_13965 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RDV84_14055 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RDV84_11735 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RDV84_13980 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RDV84_14095 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RDV84_13960 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RDV84_14090 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RDV84_14050 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RDV84_21295 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RDV84_16355 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RDV84_14030 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RDV84_19110 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RDV84_14005 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RDV84_16180 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RDV84_05080 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RDV84_13935 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RDV84_14000 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RDV84_13985 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RDV84_13990 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RDV84_14045 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RDV84_14060 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RDV84_13945 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RDV84_19115 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RDV84_13940 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RDV84_13930 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RDV84_11730 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RDV84_14035 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RDV84_14080 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RDV84_14020 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RDV84_14110 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RDV84_14065 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RDV84_16370 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RDV84_14915 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RDV84_16165 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RDV84_14010 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RDV84_13995 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RDV84_14040 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RDV84_13880 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D RDV84_16170 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RDV84_05710 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RDV84_14025 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RDV84_14075 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RDV84_01940 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RDV84_23655 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RDV84_05715 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RDV84_06880 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RDV84_14910 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RDV84_17790 ykgO; type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RDV84_05295 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RDV84_02185 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RDV84_02170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RDV84_05280 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RDV84_05275 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RDV84_02165 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:lya00970]
D RDV84_02180 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_05290 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_18035 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_18045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_23040 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_06225 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_15550 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_16575 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_16580 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_23310 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_14835 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RDV84_15665 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RDV84_15670 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RDV84_17335 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RDV84_11740 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RDV84_13870 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RDV84_16675 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RDV84_18040 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RDV84_18050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RDV84_17330 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_17340 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_17345 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_01570 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_13900 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_15555 tRNA-His K14226 tRNA-His; tRNA His
D RDV84_05285 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RDV84_02175 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RDV84_06025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_06030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_06035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_06040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_06045 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_15625 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_17375 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_18170 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_21400 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_23105 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_12735 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RDV84_15560 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RDV84_04760 tRNA-Ile K14230 tRNA-Met; tRNA Met
D RDV84_21325 tRNA-Met K14230 tRNA-Met; tRNA Met
D RDV84_02895 tRNA-Met K14230 tRNA-Met; tRNA Met
D RDV84_15045 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RDV84_22620 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RDV84_14945 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RDV84_15545 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RDV84_16570 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RDV84_23945 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RDV84_17590 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RDV84_23725 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RDV84_13905 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RDV84_11420 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RDV84_16240 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RDV84_13915 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RDV84_13895 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RDV84_14880 tRNA-Val K14237 tRNA-Val; tRNA Val
D RDV84_15660 tRNA-Val K14237 tRNA-Val; tRNA Val
D RDV84_17460 tRNA-Val K14237 tRNA-Val; tRNA Val
D RDV84_25340 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RDV84_13500 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RDV84_16560 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RDV84_12615 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RDV84_19080 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RDV84_05880 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RDV84_05875 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RDV84_14900 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RDV84_17570 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RDV84_22905 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RDV84_16755 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RDV84_04865 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RDV84_00105 formyltransferase family protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RDV84_12005 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RDV84_15505 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RDV84_16195 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RDV84_20830 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RDV84_05365 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RDV84_11980 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RDV84_22865 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RDV84_22615 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RDV84_14925 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RDV84_14930 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RDV84_05300 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RDV84_11445 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:lya03060]
D RDV84_14085 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RDV84_13920 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RDV84_21405 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RDV84_15190 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RDV84_15195 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RDV84_15185 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RDV84_06870 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RDV84_12375 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RDV84_08250 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RDV84_16345 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RDV84_23885 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D RDV84_15090 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RDV84_05910 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RDV84_05905 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D RDV84_05900 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D RDV84_10995 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RDV84_23570 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RDV84_03935 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RDV84_16200 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:lya04122]
D RDV84_16115 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RDV84_20745 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RDV84_23895 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RDV84_23915 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RDV84_23900 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein
D RDV84_17915 moeB; molybdopterin-synthase adenylyltransferase MoeB K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D RDV84_23905 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RDV84_13820 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D RDV84_01580 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:lya03018]
D RDV84_02890 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RDV84_17695 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RDV84_08765 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D RDV84_24750 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RDV84_21290 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RDV84_15385 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RDV84_15995 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RDV84_16890 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RDV84_13105 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RDV84_08755 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RDV84_21045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RDV84_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RDV84_24635 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D RDV84_24025 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RDV84_13810 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:lya03030]
D RDV84_23955 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RDV84_15790 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RDV84_23720 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RDV84_23605 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RDV84_15515 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RDV84_12010 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RDV84_06890 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RDV84_19120 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RDV84_05095 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RDV84_14320 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_23260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_23960 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RDV84_15800 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RDV84_08670 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RDV84_18625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:lya03410]
D RDV84_16085 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RDV84_08785 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RDV84_15080 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RDV84_05830 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RDV84_14355 DNA-formamidopyrimidine glycosylase family protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RDV84_24310 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RDV84_25275 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RDV84_12935 UdgX family uracil-DNA binding protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RDV84_04625 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RDV84_05325 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RDV84_08355 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RDV84_08670 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RDV84_20995 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RDV84_18625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:lya03420]
D RDV84_24145 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RDV84_14395 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RDV84_16145 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RDV84_14875 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RDV84_08640 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RDV84_08670 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RDV84_18625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:lya03430]
D RDV84_16415 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RDV84_16735 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D RDV84_08640 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RDV84_18970 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RDV84_23410 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RDV84_15760 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RDV84_20995 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RDV84_14320 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_23260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_15790 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RDV84_06890 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RDV84_23720 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RDV84_15515 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RDV84_23605 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RDV84_23955 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RDV84_12010 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RDV84_18625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:lya03440]
D RDV84_20995 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RDV84_14320 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_23260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_06895 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RDV84_23550 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RDV84_23705 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D RDV84_16550 recA; recombinase RecA K03553 recA; recombination protein RecA
D RDV84_08670 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RDV84_12655 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RDV84_12670 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RDV84_12650 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RDV84_01960 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RDV84_07370 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D RDV84_07365 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D RDV84_07375 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D RDV84_15790 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RDV84_06890 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RDV84_23720 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RDV84_15515 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RDV84_23605 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RDV84_23955 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RDV84_12010 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RDV84_08975 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:lya03450]
D RDV84_14335 Ku protein K10979 ku; DNA end-binding protein Ku
D RDV84_14330 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:lya02010]
D RDV84_08460 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D RDV84_08455 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D RDV84_08450 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D RDV84_08445 sulfate/molybdate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D RDV84_01820 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RDV84_01825 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D RDV84_01830 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RDV84_09370 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D RDV84_20570 polyamine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein
D RDV84_20585 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein
D RDV84_20580 ABC transporter permease subunit K11075 potH; putrescine transport system permease protein
D RDV84_20575 ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D RDV84_18545 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RDV84_07345 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RDV84_07350 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RDV84_11910 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RDV84_07355 MlaE family lipid ABC transporter permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RDV84_11925 MlaE family lipid ABC transporter permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RDV84_07340 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D RDV84_07360 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RDV84_11920 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RDV84_16070 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_16075 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_16120 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_16065 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D RDV84_16060 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D RDV84_16055 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RDV84_04910 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RDV84_04920 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D RDV84_08480 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RDV84_08485 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RDV84_11795 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RDV84_13570 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RDV84_11800 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RDV84_13575 ATP-binding cassette domain-containing protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RDV84_21625 ABC transporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D RDV84_06830 ABC transporter permease K09696 natB; sodium transport system permease protein
D RDV84_06825 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D RDV84_17275 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D RDV84_17280 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RDV84_18275 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D RDV84_18280 ccmC; heme ABC transporter permease CcmC K02195 ccmC; heme exporter protein C
D RDV84_18285 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D RDV84_18290 ccmA; heme ABC exporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RDV84_12025 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D RDV84_12030 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D RDV84_00785 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RDV84_08775 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RDV84_08770 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RDV84_17300 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RDV84_14450 ABC transporter ATP-binding protein K18104 abcA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2]
D RDV84_11330 ABC transporter ATP-binding protein/permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D RDV84_14895 ABC transporter ATP-binding protein/permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D RDV84_02160 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D RDV84_19570 multidrug ABC transporter permease/ATP-binding protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:lya02060]
D RDV84_00835 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RDV84_00830 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RDV84_00825 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RDV84_00800 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:lya03070]
D RDV84_02505 TolC family outer membrane protein K12340 tolC; outer membrane protein
D RDV84_07910 sctJ; type III secretion inner membrane ring lipoprotein SctJ K03222 yscJ; type III secretion protein J
D RDV84_07855 EscR/YscR/HrcR family type III secretion system export apparatus protein K03226 yscR; type III secretion protein R
D RDV84_07850 sctS; type III secretion system export apparatus subunit SctS K03227 yscS; type III secretion protein S
D RDV84_07845 sctT; type III secretion system export apparatus subunit SctT K03228 yscT; type III secretion protein T
D RDV84_07840 sctU; type III secretion system export apparatus subunit SctU K03229 yscU; type III secretion protein U
D RDV84_07890 flagellar biosynthesis protein FlhA K03230 yscV; type III secretion protein V
D RDV84_07925 FliI/YscN family ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D RDV84_07860 sctQ; type III secretion system cytoplasmic ring protein SctQ K03225 yscQ; type III secretion protein Q
D RDV84_07920 FliH/SctL family protein K03223 yscL; type III secretion protein L
D RDV84_12120 gspD; type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D
D RDV84_12075 type II secretion system F family protein K02455 gspF; general secretion pathway protein F
D RDV84_12080 gspG; type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G
D RDV84_15330 type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
D RDV84_12085 GspH/FimT family pseudopilin K02457 gspH; general secretion pathway protein H
D RDV84_12090 prepilin-type N-terminal cleavage/methylation domain-containing protein K02458 gspI; general secretion pathway protein I
D RDV84_12095 prepilin-type N-terminal cleavage/methylation domain-containing protein K02459 gspJ; general secretion pathway protein J
D RDV84_12100 type II secretion system protein GspK K02460 gspK; general secretion pathway protein K
D RDV84_12105 PilN domain-containing protein K02461 gspL; general secretion pathway protein L
D RDV84_12110 gspM; type II secretion system protein GspM K02462 gspM; general secretion pathway protein M
D RDV84_12065 gspE; type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D RDV84_15190 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RDV84_15195 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RDV84_13920 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RDV84_21405 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RDV84_14085 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RDV84_15185 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RDV84_06870 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RDV84_12375 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RDV84_15090 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RDV84_08250 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RDV84_16345 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RDV84_05910 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RDV84_05905 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D RDV84_05900 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D RDV84_18330 lytic transglycosylase domain-containing protein K03194 virB1; type IV secretion system protein VirB1
D RDV84_18335 TrbC/VirB2 family protein K03197 virB2; type IV secretion system protein VirB2
D RDV84_18340 VirB3 family type IV secretion system protein K03198 virB3; type IV secretion system protein VirB3
D RDV84_18315 TrbG/VirB9 family P-type conjugative transfer protein K03204 virB9; type IV secretion system protein VirB9
D RDV84_18360 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D RDV84_21830 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D RDV84_21850 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D RDV84_24470 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D RDV84_18310 type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8
D RDV84_18320 TrbI/VirB10 family protein K03195 virB10; type IV secretion system protein VirB10
D RDV84_18345 VirB4 family type IV secretion/conjugal transfer ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RDV84_18325 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RDV84_18425 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RDV84_06445 tssI; type VI secretion system tip protein TssI/VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D RDV84_19480 tssI; type VI secretion system tip protein TssI/VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D RDV84_04140 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D RDV84_19515 type VI secretion system tube protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp
D RDV84_04105 type VI secretion system tube protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp
D RDV84_04125 tssJ; type VI secretion system lipoprotein TssJ K11906 vasD; type VI secretion system protein VasD
D RDV84_19455 tssM; type VI secretion system membrane subunit TssM K11891 impL; type VI secretion system protein ImpL
D RDV84_04215 tssM; type VI secretion system membrane subunit TssM K11891 impL; type VI secretion system protein ImpL
D RDV84_19460 tssL; type VI secretion system protein TssL, long form K11892 impK; type VI secretion system protein ImpK
D RDV84_04135 icmH; type IVB secretion system protein IcmH/DotU K11892 impK; type VI secretion system protein ImpK
D RDV84_19490 tssH; type VI secretion system ATPase TssH K11907 vasG; type VI secretion system protein VasG
D RDV84_04085 tssH; type VI secretion system ATPase TssH K11907 vasG; type VI secretion system protein VasG
D RDV84_15460 bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:lya02020]
D RDV84_24020 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RDV84_24015 phoB; phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D RDV84_11095 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_24930 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_20405 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D RDV84_16070 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_16075 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_16120 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_11380 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D RDV84_11375 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP
D RDV84_23095 ATP-binding protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D RDV84_23100 winged helix-turn-helix domain-containing protein K07661 rstA; two-component system, OmpR family, response regulator RstA
D RDV84_10885 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RDV84_23580 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RDV84_24100 creC; two-component system sensor histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D RDV84_24105 creB; two-component system response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D RDV84_19400 efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D RDV84_19395 multidrug efflux RND transporter permease subunit K07788 mdtB; multidrug efflux pump
D RDV84_19390 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump
D RDV84_23125 heavy metal sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RDV84_23130 heavy metal response regulator transcription factor K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RDV84_09970 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RDV84_16590 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D RDV84_16585 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D RDV84_16610 kdpA; potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D RDV84_16605 kdpB; potassium-transporting ATPase subunit KdpB K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D RDV84_16600 kdpC; potassium-transporting ATPase subunit KdpC K01548 kdpC; potassium-transporting ATPase KdpC subunit
D RDV84_09365 sensor histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D RDV84_09360 response regulator transcription factor K07774 tctD; two-component system, OmpR family, response regulator TctD
D RDV84_05140 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RDV84_06885 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RDV84_10225 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RDV84_24300 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RDV84_05575 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D RDV84_10405 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D RDV84_10410 LytTR family DNA-binding domain-containing protein K08083 algR; two-component system, LytTR family, response regulator AlgR
D RDV84_06825 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D RDV84_06830 ABC transporter permease K09696 natB; sodium transport system permease protein
D RDV84_19190 response regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D RDV84_06230 response regulator transcription factor K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RDV84_17690 response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RDV84_03590 response regulator transcription factor K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RDV84_16565 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D RDV84_07675 ATP-binding protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D RDV84_01260 serine hydrolase domain-containing protein K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D RDV84_15160 sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RDV84_15165 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR
D RDV84_06000 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RDV84_05985 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RDV84_05990 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D RDV84_05995 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein
D RDV84_06370 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein
D RDV84_15920 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D RDV84_05420 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D RDV84_08170 ATP-binding protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RDV84_08175 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D RDV84_07760 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RDV84_06205 TIGR00366 family protein K02106 atoE; short-chain fatty acids transporter
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_12425 histidine kinase dimerization/phospho-acceptor domain-containing protein K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D RDV84_12420 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D RDV84_00790 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D RDV84_12415 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RDV84_17995 Cache 3/Cache 2 fusion domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D RDV84_13235 ATP-binding protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RDV84_13240 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RDV84_13205 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D RDV84_13200 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D RDV84_13210 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D RDV84_13190 pilG; twitching motility response regulator PilG K02657 pilG; twitching motility two-component system response regulator PilG
D RDV84_13195 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RDV84_18735 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RDV84_13215 chemotaxis protein CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D RDV84_13220 chemotaxis protein CheW K06598 chpC; chemosensory pili system protein ChpC
D RDV84_20070 CheR family methyltransferase K13486 wspC; chemotaxis protein methyltransferase WspC
D RDV84_20060 methyl-accepting chemotaxis protein K13487 wspA; methyl-accepting chemotaxis protein WspA
D RDV84_20065 chemotaxis protein CheW K13488 wspB; chemotaxis-related protein WspB
D RDV84_20075 chemotaxis protein CheW K13489 wspD; chemotaxis-related protein WspD
D RDV84_20080 hybrid sensor histidine kinase/response regulator K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D RDV84_20085 chemotaxis response regulator protein-glutamate methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D RDV84_20090 diguanylate cyclase K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65]
D RDV84_20820 ATP-binding protein K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D RDV84_20825 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D RDV84_09915 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_11710 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_14240 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_20815 crotonase/enoyl-CoA hydratase family protein K13816 rpfF; DSF synthase
D RDV84_20445 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D RDV84_21205 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D RDV84_07815 response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D RDV84_20450 response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D RDV84_21200 response regulator K15012 regA; two-component system, response regulator RegA
D RDV84_14740 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RDV84_14745 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RDV84_14750 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RDV84_12725 c-type cytochrome K08738 CYC; cytochrome c
D RDV84_08685 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RDV84_03275 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RDV84_08690 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RDV84_03270 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RDV84_03265 cydX; cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D RDV84_02505 TolC family outer membrane protein K12340 tolC; outer membrane protein
D RDV84_20050 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein
D RDV84_20900 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein
D RDV84_17315 low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RDV84_20910 low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RDV84_20915 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RDV84_20930 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D RDV84_20935 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D RDV84_20040 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D RDV84_14485 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D RDV84_08125 FecR domain-containing protein K07165 fecR; transmembrane sensor
D RDV84_19640 FecR domain-containing protein K07165 fecR; transmembrane sensor
D RDV84_03370 FecR domain-containing protein K07165 fecR; transmembrane sensor
D RDV84_03445 FecR domain-containing protein K07165 fecR; transmembrane sensor
D RDV84_02835 FecR domain-containing protein K07165 fecR; transmembrane sensor
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:lya04148]
D RDV84_11425 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RDV84_16520 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RDV84_14740 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:lya02024]
D RDV84_24635 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D RDV84_11620 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RDV84_11680 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D RDV84_09750 glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D RDV84_13140 glycosyltransferase family 2 protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D RDV84_14120 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RDV84_16585 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D RDV84_20815 crotonase/enoyl-CoA hydratase family protein K13816 rpfF; DSF synthase
D RDV84_06460 M4 family metallopeptidase K20273 zmpA; zinc metalloprotease ZmpA
D RDV84_07000 M4 family metallopeptidase K20273 zmpA; zinc metalloprotease ZmpA
D RDV84_24850 M4 family metallopeptidase K20273 zmpA; zinc metalloprotease ZmpA
D RDV84_20810 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_03635 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_20820 ATP-binding protein K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D RDV84_20825 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D RDV84_09915 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_11710 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_14240 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_25335 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RDV84_03775 class I SAM-dependent methyltransferase K20331 toxA; toxoflavin synthase [EC:2.1.1.349]
D RDV84_12200 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RDV84_06550 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D RDV84_09800 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D RDV84_04910 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RDV84_04920 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D RDV84_08480 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RDV84_08485 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RDV84_06870 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RDV84_07790 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13685 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13690 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13700 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13705 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13710 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_16155 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_19170 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_25020 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13920 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RDV84_21405 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RDV84_14085 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RDV84_15185 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RDV84_12375 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RDV84_15090 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RDV84_08250 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RDV84_16345 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RDV84_22485 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D RDV84_24425 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:lya02030]
D RDV84_17995 Cache 3/Cache 2 fusion domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D RDV84_13235 ATP-binding protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RDV84_13240 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RDV84_09985 FliM/FliN family flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
C 02040 Flagellar assembly [PATH:lya02040]
D RDV84_10035 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D RDV84_10030 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RDV84_10020 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D RDV84_10015 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RDV84_09985 FliM/FliN family flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D RDV84_07885 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RDV84_09980 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D RDV84_09975 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RDV84_10090 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RDV84_10085 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RDV84_10075 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RDV84_10080 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D RDV84_10045 hypothetical protein K02387 flgB; flagellar basal-body rod protein FlgB
D RDV84_10040 flagellar basal body rod C-terminal domain-containing protein K02388 flgC; flagellar basal-body rod protein FlgC
D RDV84_10000 flagellar hook capping FlgD N-terminal domain-containing protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D RDV84_09995 flagellar hook-basal body complex protein K02390 flgE; flagellar hook protein FlgE
D RDV84_10070 flagellar hook basal-body protein K02391 flgF; flagellar basal-body rod protein FlgF
D RDV84_10065 flagellar hook-basal body protein K02392 flgG; flagellar basal-body rod protein FlgG
D RDV84_08165 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D RDV84_10055 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D RDV84_10050 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D RDV84_04810 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RDV84_00790 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D RDV84_09970 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RDV84_24750 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:lya04980]
D RDV84_13450 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RDV84_18895 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RDV84_18900 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:lya01501]
D RDV84_05320 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RDV84_23520 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RDV84_21965 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D RDV84_01260 serine hydrolase domain-containing protein K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D RDV84_04910 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RDV84_04920 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D RDV84_08480 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RDV84_08485 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RDV84_20395 M23/M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_18605 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_01835 TonB family protein K02172 blaR1; bla regulator protein blaR1
D RDV84_15870 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_20390 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_01840 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_18610 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_11035 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D RDV84_09790 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_01675 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_03905 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_17740 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_09795 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_01665 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_03910 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_06550 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D RDV84_09800 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D RDV84_02505 TolC family outer membrane protein K12340 tolC; outer membrane protein
D RDV84_14450 ABC transporter ATP-binding protein K18104 abcA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2]
D RDV84_01920 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RDV84_10605 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RDV84_12305 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RDV84_11335 penicillin-binding transpeptidase domain-containing protein K17838 oxa; beta-lactamase class D [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:lya01502]
D RDV84_10225 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RDV84_12340 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RDV84_19165 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RDV84_12315 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RDV84_12320 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RDV84_12330 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RDV84_24300 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:lya01503]
D RDV84_11380 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D RDV84_11375 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP
D RDV84_08840 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D RDV84_16725 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RDV84_10885 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RDV84_23580 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RDV84_04965 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RDV84_04970 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RDV84_09790 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_01675 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_03905 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_17740 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_09795 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_01665 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_03910 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_02505 TolC family outer membrane protein K12340 tolC; outer membrane protein
D RDV84_15815 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:lya01000]
C 01001 Protein kinases [BR:lya01001]
D RDV84_15460 bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D RDV84_05840 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RDV84_06410 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RDV84_24385 winged helix-turn-helix domain-containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RDV84_04340 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RDV84_15015 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RDV84_16825 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RDV84_16830 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RDV84_22650 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RDV84_20915 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RDV84_24020 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RDV84_11380 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D RDV84_23095 ATP-binding protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D RDV84_24100 creC; two-component system sensor histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D RDV84_23125 heavy metal sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RDV84_16590 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D RDV84_09365 sensor histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D RDV84_08870 ATP-binding protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RDV84_09520 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RDV84_07675 ATP-binding protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D RDV84_15160 sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RDV84_10405 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D RDV84_08170 ATP-binding protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RDV84_12425 histidine kinase dimerization/phospho-acceptor domain-containing protein K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D RDV84_13235 ATP-binding protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RDV84_13210 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D RDV84_20080 hybrid sensor histidine kinase/response regulator K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D RDV84_20820 ATP-binding protein K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D RDV84_20445 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D RDV84_21205 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D RDV84_00720 tetratricopeptide repeat protein K19694 chiS; two-component system, sensor histidine kinase ChiS
D RDV84_06760 hybrid sensor histidine kinase/response regulator K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:lya01009]
D RDV84_01460 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RDV84_20895 ATP-binding protein K04079 HSP90A; molecular chaperone HtpG
D RDV84_23950 protein phosphatase 2C domain-containing protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:lya01002]
D RDV84_16200 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RDV84_12390 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RDV84_16790 pcp; pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D RDV84_05885 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RDV84_16885 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RDV84_17955 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RDV84_21810 type 1 glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D RDV84_25375 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RDV84_06140 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RDV84_07535 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_20985 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_02990 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RDV84_15950 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RDV84_17225 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RDV84_23085 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RDV84_21905 linear amide C-N hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D RDV84_06910 CPBP family intramembrane glutamic endopeptidase K07052 K07052; CAAX protease family protein
D RDV84_11915 CPBP family intramembrane glutamic endopeptidase K07052 K07052; CAAX protease family protein
D RDV84_16335 CPBP family glutamic-type intramembrane protease K07052 K07052; CAAX protease family protein
D RDV84_10560 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
D RDV84_25080 M1 family metallopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RDV84_24365 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D RDV84_17070 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D RDV84_18675 M4 family metallopeptidase K08604 hap; vibriolysin [EC:3.4.24.25]
D RDV84_18680 M4 family metallopeptidase K08604 hap; vibriolysin [EC:3.4.24.25]
D RDV84_06460 M4 family metallopeptidase K20273 zmpA; zinc metalloprotease ZmpA
D RDV84_07000 M4 family metallopeptidase K20273 zmpA; zinc metalloprotease ZmpA
D RDV84_24850 M4 family metallopeptidase K20273 zmpA; zinc metalloprotease ZmpA
D RDV84_05505 collagenase K01387 colA; microbial collagenase [EC:3.4.24.3]
D RDV84_15305 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RDV84_15310 M13-type metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RDV84_15315 M13-type metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RDV84_22100 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RDV84_22145 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RDV84_04010 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RDV84_24300 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RDV84_10225 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RDV84_16475 M15 family metallopeptidase K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D RDV84_04230 M15 family metallopeptidase K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D RDV84_05540 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D RDV84_08330 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D RDV84_24900 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D RDV84_03325 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D RDV84_24895 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D RDV84_10850 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RDV84_12020 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RDV84_05100 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RDV84_24535 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RDV84_25295 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RDV84_15940 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RDV84_02380 M23 family metallopeptidase K20749 E3.4.24.32; beta-lytic metalloendopeptidase [EC:3.4.24.32]
D RDV84_12155 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RDV84_15915 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RDV84_10170 Xaa-Pro peptidase family protein K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D RDV84_02055 pepQ; Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D RDV84_02075 aminopeptidase P N-terminal domain-containing protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RDV84_13740 M20/M25/M40 family metallo-hydrolase K05994 E3.4.11.10; bacterial leucyl aminopeptidase [EC:3.4.11.10]
D RDV84_13745 M20/M25/M40 family metallo-hydrolase K05994 E3.4.11.10; bacterial leucyl aminopeptidase [EC:3.4.11.10]
D RDV84_17170 M35 family metallo-endopeptidase K08646 MEP; peptidyl-Lys metalloendopeptidase [EC:3.4.24.20]
D RDV84_24655 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RDV84_23000 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RDV84_24010 M48 family metalloprotease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D RDV84_15835 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D RDV84_20395 M23/M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_18605 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_01835 TonB family protein K02172 blaR1; bla regulator protein blaR1
D RDV84_15870 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_05400 M12 family metallo-peptidase K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D RDV84_09105 zinc-dependent metalloprotease family protein K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D RDV84_13720 PKD domain-containing protein K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D RDV84_24925 M12 family metallo-peptidase K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D RDV84_01510 M12 family metallo-peptidase K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D RDV84_11385 zinc-dependent peptidase K09933 mtfA; MtfA peptidase
D RDV84_10885 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RDV84_23580 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RDV84_09505 VWD domain-containing protein K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D RDV84_13725 PKD domain-containing protein K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D RDV84_13730 PKD domain-containing protein K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D RDV84_13735 M14 family zinc carboxypeptidase K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D RDV84_15990 serine protease K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D RDV84_22115 serine protease K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D RDV84_22160 S1 family peptidase K18546 sprC; streptogrisin C [EC:3.4.21.-]
D RDV84_22175 S1 family peptidase K18546 sprC; streptogrisin C [EC:3.4.21.-]
D RDV84_14465 S1 family peptidase K20136 alpha-LP; alpha-lytic endopeptidase [EC:3.4.21.12]
D RDV84_23465 S1 family peptidase K20136 alpha-LP; alpha-lytic endopeptidase [EC:3.4.21.12]
D RDV84_23470 S1 family peptidase K20136 alpha-LP; alpha-lytic endopeptidase [EC:3.4.21.12]
D RDV84_07790 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13685 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13690 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13700 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13705 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13710 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_16155 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_19170 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_25020 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_15030 S8 family serine peptidase K17734 aprX; serine protease AprX [EC:3.4.21.-]
D RDV84_10470 prolyl oligopeptidase family serine peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D RDV84_08620 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RDV84_25365 DPP IV N-terminal domain-containing protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RDV84_10475 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D RDV84_10740 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RDV84_03250 serine hydrolase K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D RDV84_15635 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RDV84_15650 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D RDV84_16540 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RDV84_21170 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RDV84_10995 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RDV84_23570 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RDV84_03935 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RDV84_13560 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RDV84_15620 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RDV84_05235 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RDV84_10785 carboxy terminal-processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RDV84_15945 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D RDV84_09005 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D RDV84_10505 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D RDV84_08110 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D RDV84_07655 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RDV84_15115 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RDV84_15730 pmbA; metalloprotease PmbA K03592 pmbA; PmbA protein
D RDV84_15715 tldD; metalloprotease TldD K03568 tldD; TldD protein
D RDV84_19015 TldD/PmbA family protein K03568 tldD; TldD protein
D RDV84_19025 TldD/PmbA family protein K03568 tldD; TldD protein
D RDV84_18685 alpha-2-macroglobulin K06894 yfhM; alpha-2-macroglobulin
D RDV84_21580 alpha-2-macroglobulin K06894 yfhM; alpha-2-macroglobulin
D RDV84_24620 protease modulator HflC K04087 hflC; modulator of FtsH protease HflC
D RDV84_24625 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:lya01003]
D RDV84_03515 glycosyltransferase family 4 protein K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346]
D RDV84_21770 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D RDV84_01140 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RDV84_18700 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RDV84_21585 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RDV84_13145 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RDV84_01920 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RDV84_07980 glycosyltransferase family 1 protein K21002 pslI; polysaccharide biosynthesis protein PslI
D RDV84_24060 mdoH; glucans biosynthesis glucosyltransferase MdoH K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D RDV84_04565 glucoamylase family protein K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
D RDV84_22720 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D RDV84_08850 glycosyltransferase K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:lya01005]
D RDV84_15815 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RDV84_15805 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RDV84_12360 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RDV84_15825 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RDV84_25345 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RDV84_17305 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RDV84_04820 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RDV84_02525 lpxL; LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RDV84_12170 lpxO; lipid A hydroxylase LpxO K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D RDV84_10265 lipid A deacylase LpxR family protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-]
D RDV84_02520 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RDV84_08840 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D RDV84_23925 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D RDV84_24760 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RDV84_17310 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RDV84_00770 HAD hydrolase family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D RDV84_00765 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RDV84_04850 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D RDV84_23930 glycosyltransferase family 9 protein K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D RDV84_09750 glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D RDV84_13140 glycosyltransferase family 2 protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D RDV84_01135 glycosyltransferase family 2 protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:lya01011]
D RDV84_00755 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RDV84_23355 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RDV84_12335 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RDV84_12310 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RDV84_12340 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RDV84_19165 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RDV84_12320 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RDV84_12330 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RDV84_07755 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RDV84_24075 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RDV84_16185 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RDV84_01920 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RDV84_13145 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RDV84_18700 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RDV84_21585 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RDV84_10605 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RDV84_12305 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RDV84_10740 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RDV84_03250 serine hydrolase K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D RDV84_01140 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RDV84_10225 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RDV84_24300 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RDV84_16475 M15 family metallopeptidase K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D RDV84_04230 M15 family metallopeptidase K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D RDV84_05000 transglycosylase SLT domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RDV84_21520 transglycosylase SLT domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D RDV84_23615 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RDV84_10735 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RDV84_03875 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RDV84_16725 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:lya01004]
D RDV84_23640 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RDV84_14685 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RDV84_23650 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RDV84_08560 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RDV84_23625 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RDV84_08540 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_10555 3-oxoacyl-ACP reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_19060 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_21245 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_23635 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RDV84_15820 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RDV84_03760 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D RDV84_03210 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D RDV84_24215 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RDV84_05815 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RDV84_25115 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RDV84_11155 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D RDV84_19875 SDR family NAD(P)-dependent oxidoreductase K13613 pksM; bacillaene polyketide synthase PksM/BaeM
D RDV84_05755 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RDV84_00080 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D RDV84_20810 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_03635 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_22820 fatty acyl-AMP ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D RDV84_24035 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D RDV84_05975 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RDV84_11400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
C 01008 Polyketide biosynthesis proteins [BR:lya01008]
D RDV84_19875 SDR family NAD(P)-dependent oxidoreductase K13613 pksM; bacillaene polyketide synthase PksM/BaeM
D RDV84_19880 amino acid adenylation domain-containing protein K25849 dfnD; difficidin synthase DfnD
D RDV84_16505 HSAF biosynthetic non-ribosomal peptide synthetase/polyketide synthase K15395 ftdB; hybrid polyketide synthase / nonribosomal peptide synthetase FtdB
D RDV84_19885 amino acid adenylation domain-containing protein K16118 snbDE; pristinamycin I synthase 3 and 4
D RDV84_14430 MbtH family protein K05375 mbtH; MbtH protein
D RDV84_19240 isochorismatase family protein K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D RDV84_06455 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D RDV84_19235 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D RDV84_08855 amino acid adenylation domain-containing protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
D RDV84_19855 fabD; ACP S-malonyltransferase K15327 pksC; polyketide biosynthesis malonyl-CoA-[acyl-carrier-protein] transacylase
D RDV84_22435 glycosyltransferase K16444 gtfB; vancomycin aglycone glucosyltransferase [EC:2.4.1.310]
D RDV84_01410 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:lya01006]
D RDV84_15755 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RDV84_14280 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RDV84_15850 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RDV84_24640 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RDV84_06220 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RDV84_05135 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:lya01007]
D RDV84_25340 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RDV84_13500 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RDV84_23005 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D RDV84_05300 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RDV84_11445 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RDV84_22905 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RDV84_05365 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RDV84_16755 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RDV84_16195 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RDV84_12005 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RDV84_15505 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RDV84_20830 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RDV84_12615 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RDV84_19080 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RDV84_22615 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RDV84_05880 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RDV84_05875 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RDV84_17570 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RDV84_11980 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RDV84_22865 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RDV84_14900 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RDV84_16560 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RDV84_14925 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RDV84_14930 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RDV84_14190 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RDV84_09330 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RDV84_18300 pyridoxal phosphate-dependent aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D RDV84_09220 pyridoxal phosphate-dependent aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D RDV84_17550 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_22580 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RDV84_21645 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RDV84_25460 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RDV84_06180 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D RDV84_02220 acetylornithine/succinyldiaminopimelate transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RDV84_21615 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D RDV84_13260 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D RDV84_02205 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RDV84_01520 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_02435 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RDV84_17540 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:lya00194]
D RDV84_03045 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RDV84_03050 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RDV84_03055 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RDV84_03060 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RDV84_03065 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RDV84_03070 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RDV84_03075 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RDV84_03080 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:lya03000]
D RDV84_12570 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D RDV84_13660 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D RDV84_02355 helix-turn-helix domain-containing protein K07506 K07506; AraC family transcriptional regulator
D RDV84_15370 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D RDV84_10790 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RDV84_25275 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RDV84_08810 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RDV84_09065 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RDV84_09390 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RDV84_25065 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RDV84_13535 oxyR; DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RDV84_03890 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RDV84_00610 LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D RDV84_21965 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D RDV84_14505 DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D RDV84_04775 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RDV84_07570 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RDV84_07805 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RDV84_19330 LacI family DNA-binding transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D RDV84_00725 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D RDV84_07540 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D RDV84_08910 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RDV84_09945 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RDV84_13665 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RDV84_07635 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D RDV84_19925 TetR/AcrR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D RDV84_19620 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RDV84_01440 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RDV84_02495 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D RDV84_17975 TetR/AcrR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D RDV84_11145 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D RDV84_07275 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RDV84_10795 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RDV84_11170 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RDV84_15535 Lrp/AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
D RDV84_10235 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RDV84_20530 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RDV84_02090 MerR family DNA-binding protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RDV84_21755 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D RDV84_21065 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RDV84_25335 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RDV84_09915 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_11710 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_14240 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RDV84_03295 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RDV84_20340 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D RDV84_04485 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RDV84_14375 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RDV84_03615 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RDV84_24960 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D RDV84_10115 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D RDV84_20390 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_01840 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_18610 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_11405 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RDV84_02710 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RDV84_05185 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RDV84_09085 metal/formaldehyde-sensitive transcriptional repressor K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D RDV84_18490 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RDV84_05675 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RDV84_23795 plasmid partitioning protein RepB C-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RDV84_21055 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D RDV84_16650 glycine cleavage system protein R K03567 gcvR; glycine cleavage system transcriptional repressor
D RDV84_23120 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D RDV84_19065 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D RDV84_00860 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D RDV84_22930 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D RDV84_12185 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D RDV84_11340 rtcR; RNA repair transcriptional activator RtcR K14414 rtcR; transcriptional regulatory protein RtcR
D RDV84_12290 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:lya03021]
D RDV84_14105 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RDV84_13950 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RDV84_13955 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RDV84_02005 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RDV84_04810 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RDV84_07500 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RDV84_23115 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RDV84_23435 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RDV84_23590 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RDV84_25125 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RDV84_01180 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RDV84_03860 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RDV84_09870 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RDV84_08925 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D RDV84_00790 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D RDV84_09970 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RDV84_21315 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RDV84_12230 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RDV84_13925 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RDV84_14755 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
D RDV84_14760 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D RDV84_22930 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D RDV84_21005 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RDV84_21535 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D RDV84_25110 GreA/GreB family elongation factor K04760 greB; transcription elongation factor GreB
D RDV84_08755 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:lya03019]
D RDV84_17695 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RDV84_15705 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D RDV84_23560 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RDV84_15995 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RDV84_06120 ribonuclease domain-containing protein K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D RDV84_18010 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RDV84_08765 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D RDV84_15385 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RDV84_16890 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RDV84_13105 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RDV84_24750 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RDV84_21290 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RDV84_08755 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RDV84_21045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RDV84_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RDV84_24635 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D RDV84_24025 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RDV84_13810 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RDV84_02890 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RDV84_16565 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D RDV84_11610 rraA; ribonuclease E activity regulator RraA K02553 rraA; regulator of ribonuclease activity A
D RDV84_00810 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D RDV84_13115 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D RDV84_06775 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:lya03011]
D RDV84_17800 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RDV84_15910 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RDV84_14015 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RDV84_14100 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RDV84_14070 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RDV84_19105 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RDV84_13965 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RDV84_14055 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RDV84_11735 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RDV84_13980 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RDV84_14095 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RDV84_13960 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RDV84_14090 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RDV84_14050 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RDV84_21295 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RDV84_16355 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RDV84_14030 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RDV84_19110 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RDV84_14005 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RDV84_16180 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RDV84_05080 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RDV84_25310 30S ribosomal protein THX K19033 PSRP4; 30S ribosomal protein S31
D RDV84_13935 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RDV84_14000 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RDV84_13985 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RDV84_13990 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RDV84_14045 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RDV84_14060 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RDV84_19115 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RDV84_13940 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RDV84_13930 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RDV84_13945 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RDV84_11730 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RDV84_14035 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RDV84_14080 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RDV84_14020 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RDV84_14110 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RDV84_14065 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RDV84_16370 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RDV84_14915 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RDV84_16165 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RDV84_14010 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RDV84_13995 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RDV84_14040 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RDV84_16170 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RDV84_05710 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RDV84_14025 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RDV84_14075 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RDV84_01940 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RDV84_23655 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RDV84_05715 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RDV84_06880 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RDV84_14910 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RDV84_17790 ykgO; type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RDV84_13880 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D RDV84_05275 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RDV84_02165 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RDV84_05295 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RDV84_02185 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RDV84_02170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RDV84_05280 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:lya03009]
D RDV84_23560 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RDV84_18010 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RDV84_23555 era; GTPase Era K03595 era; GTPase
D RDV84_16175 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D RDV84_22930 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D RDV84_21315 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RDV84_12230 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RDV84_13925 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RDV84_03180 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D RDV84_13420 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RDV84_04860 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RDV84_03185 class I SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RDV84_15095 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RDV84_13255 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RDV84_05665 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RDV84_12295 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RDV84_12270 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RDV84_16000 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RDV84_24660 rlmE; 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RDV84_15680 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D RDV84_07310 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D RDV84_24110 rlmJ; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D RDV84_24195 rlmKL; bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D RDV84_13490 rlmM; 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D RDV84_17875 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RDV84_23530 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D RDV84_16880 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RDV84_18460 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RDV84_25485 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RDV84_17700 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RDV84_12460 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RDV84_06735 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D RDV84_17010 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D RDV84_01645 RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D RDV84_12000 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D RDV84_01535 rimK; 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D RDV84_16360 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D RDV84_16860 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D RDV84_20375 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D RDV84_04290 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D RDV84_02700 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D RDV84_21485 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D RDV84_18780 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D RDV84_08590 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D RDV84_17695 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RDV84_15705 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D RDV84_00855 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RDV84_25095 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D RDV84_16890 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RDV84_09335 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RDV84_17900 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D RDV84_24630 hflX; ribosome rescue GTPase HflX K03665 hflX; GTPase
D RDV84_09040 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RDV84_02000 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RDV84_11210 HD domain-containing protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RDV84_21305 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D RDV84_21320 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D RDV84_25155 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D RDV84_15525 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D RDV84_14670 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D RDV84_24665 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D RDV84_15725 yjgA; ribosome biogenesis factor YjgA K09889 yjgA; ribosome-associated protein
D RDV84_00795 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
D RDV84_13890 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D RDV84_23660 YceD family protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:lya03016]
D RDV84_06120 ribonuclease domain-containing protein K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D RDV84_05015 multifunctional CCA addition/repair protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D RDV84_09825 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D RDV84_11345 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D RDV84_25340 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RDV84_11980 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RDV84_22865 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RDV84_16195 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RDV84_15505 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RDV84_16755 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RDV84_13500 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RDV84_05365 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RDV84_20830 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RDV84_12615 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RDV84_16560 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RDV84_19080 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RDV84_14900 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RDV84_17570 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RDV84_22905 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RDV84_12005 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RDV84_22615 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RDV84_14925 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RDV84_14930 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RDV84_05300 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RDV84_11445 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RDV84_04815 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RDV84_23700 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RDV84_02215 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RDV84_01605 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RDV84_09655 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D RDV84_21460 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RDV84_21300 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RDV84_24730 truD; tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D RDV84_09040 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RDV84_24640 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RDV84_06865 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RDV84_07465 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RDV84_13270 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RDV84_06875 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RDV84_12280 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D RDV84_16025 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D RDV84_02020 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RDV84_23035 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RDV84_16955 thpR; RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D RDV84_00635 RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D RDV84_12165 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D RDV84_05880 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RDV84_05875 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RDV84_23005 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D RDV84_17985 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RDV84_11360 dusA; tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D RDV84_01395 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D RDV84_14730 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RDV84_03940 class I SAM-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D RDV84_16365 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RDV84_01645 RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D RDV84_15220 RNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D RDV84_08325 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D RDV84_05535 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D RDV84_16880 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RDV84_20745 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RDV84_05940 ttcA; tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D RDV84_19090 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D RDV84_17230 folate-binding protein K06980 ygfZ; tRNA-modifying protein YgfZ
D RDV84_15170 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RDV84_12730 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RDV84_02900 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RDV84_12715 queE; 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RDV84_06640 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RDV84_16710 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D RDV84_03550 epoxyqueuosine reductase QueH K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D RDV84_15180 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RDV84_15765 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RDV84_13165 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RDV84_05075 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RDV84_16720 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RDV84_17185 tcdA; tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D RDV84_15995 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RDV84_21290 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:lya03012]
D RDV84_21310 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RDV84_14905 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RDV84_12600 ABC-F family ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D RDV84_15905 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D RDV84_13910 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RDV84_13975 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RDV84_13970 fusA; elongation factor G K02355 fusA; elongation factor G
D RDV84_00025 fusA; elongation factor G K02355 fusA; elongation factor G
D RDV84_00370 fusA; elongation factor G K02355 fusA; elongation factor G
D RDV84_13845 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D RDV84_15855 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D RDV84_13555 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RDV84_13885 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RDV84_20705 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RDV84_22470 yeiP; elongation factor P-like protein YeiP K02356 efp; elongation factor P
D RDV84_22985 efp; elongation factor P K02356 efp; elongation factor P
D RDV84_18630 epmA; EF-P lysine aminoacylase EpmA K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D RDV84_22990 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D RDV84_20835 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D RDV84_01100 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D RDV84_05525 arfB; alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:lya03110]
D RDV84_20725 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D RDV84_12490 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RDV84_16410 AAA family ATPase K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D RDV84_15640 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RDV84_10510 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D RDV84_20895 ATP-binding protein K04079 HSP90A; molecular chaperone HtpG
D RDV84_21045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RDV84_22295 Hsp70 family protein K04045 hscC; molecular chaperone HscC
D RDV84_06095 Hsp70 family protein K04046 yegD; hypothetical chaperone protein
D RDV84_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RDV84_21040 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RDV84_18730 DnaJ C-terminal domain-containing protein K05516 cbpA; curved DNA-binding protein
D RDV84_01145 Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33
D RDV84_21050 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RDV84_16385 RNA-binding S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D RDV84_02600 co-chaperone GroES K04078 groES; chaperonin GroES
D RDV84_10885 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RDV84_23580 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RDV84_24655 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RDV84_03080 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RDV84_05990 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D RDV84_08250 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RDV84_07820 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A
D RDV84_16135 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A
D RDV84_07790 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13685 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13690 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13700 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13705 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_13710 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_16155 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_19170 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_25020 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D RDV84_07690 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RDV84_20855 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RDV84_14170 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D RDV84_15675 SurA N-terminal domain-containing protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D RDV84_08060 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D RDV84_18850 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D RDV84_18855 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D RDV84_21560 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D RDV84_24860 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D RDV84_13430 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D RDV84_08760 trxA; thioredoxin K03671 TXN; thioredoxin
D RDV84_15470 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin
D RDV84_16275 glutaredoxin family protein K03676 grxC; glutaredoxin 3
D RDV84_24005 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D RDV84_04365 glutaredoxin domain-containing protein K07390 grxD; monothiol glutaredoxin
D RDV84_09305 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D RDV84_14805 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D RDV84_04965 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RDV84_04970 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RDV84_14115 disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D RDV84_12045 DsbC family protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RDV84_12050 DsbC family protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RDV84_02660 dsbD; protein-disulfide reductase DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D RDV84_18260 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:lya04131]
D RDV84_17870 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RDV84_01360 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D RDV84_01695 class I fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RDV84_01795 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RDV84_01710 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RDV84_20895 ATP-binding protein K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:lya03051]
D RDV84_20895 ATP-binding protein K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:lya03032]
D RDV84_23960 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RDV84_15655 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RDV84_14935 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RDV84_17805 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RDV84_06885 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RDV84_19120 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RDV84_05095 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RDV84_14320 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_23260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_15790 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RDV84_06890 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RDV84_12010 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RDV84_15515 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RDV84_23605 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RDV84_23955 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RDV84_23720 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RDV84_15800 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RDV84_08670 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RDV84_18625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RDV84_00650 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D RDV84_18655 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RDV84_06905 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RDV84_23145 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RDV84_24805 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RDV84_04900 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RDV84_20240 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:lya03036]
D RDV84_23560 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RDV84_01695 class I fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RDV84_04745 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_11975 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_12745 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_12845 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_13070 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_15655 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RDV84_14935 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RDV84_17805 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RDV84_18730 DnaJ C-terminal domain-containing protein K05516 cbpA; curved DNA-binding protein
D RDV84_06885 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RDV84_13110 Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D RDV84_02710 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RDV84_24635 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D RDV84_03890 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RDV84_07275 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RDV84_10795 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RDV84_11170 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RDV84_18615 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D RDV84_18470 ScpA family protein K05896 scpA; segregation and condensation protein A
D RDV84_12350 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RDV84_24745 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D RDV84_08770 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RDV84_12305 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RDV84_20675 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RDV84_12300 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D RDV84_12345 cell division protein FtsQ/DivIB K03589 ftsQ; cell division protein FtsQ
D RDV84_12325 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D RDV84_08775 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RDV84_12355 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RDV84_18620 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D RDV84_02125 cell division protein ZapA K09888 zapA; cell division protein ZapA
D RDV84_02120 TIGR02449 family protein K09892 zapB; cell division protein ZapB
D RDV84_06530 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE
D RDV84_16725 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RDV84_09790 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_01675 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_03905 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_17740 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_24340 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D RDV84_24345 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D RDV84_24350 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D RDV84_10590 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RDV84_10595 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D RDV84_10600 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D RDV84_10610 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D RDV84_05670 AAA family ATPase K03496 parA; chromosome partitioning protein
D RDV84_07615 ParA family protein K03496 parA; chromosome partitioning protein
D RDV84_05675 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RDV84_23795 plasmid partitioning protein RepB C-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RDV84_23145 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RDV84_24805 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RDV84_07465 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RDV84_05665 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RDV84_10500 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D RDV84_12040 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D RDV84_16770 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RDV84_04955 yihA; ribosome biogenesis GTP-binding protein YihA/YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:lya03400]
D RDV84_25280 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RDV84_19175 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RDV84_08785 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RDV84_15080 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RDV84_16085 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RDV84_01805 S1/P1 nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D RDV84_12380 Nudix family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RDV84_24905 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RDV84_05350 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RDV84_10790 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RDV84_12935 UdgX family uracil-DNA binding protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RDV84_24310 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RDV84_25275 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RDV84_05830 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RDV84_14355 DNA-formamidopyrimidine glycosylase family protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RDV84_04625 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RDV84_05325 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RDV84_08355 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RDV84_10860 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RDV84_20995 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RDV84_18625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RDV84_08670 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RDV84_14395 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RDV84_16145 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RDV84_14875 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RDV84_08640 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RDV84_13950 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RDV84_13955 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RDV84_14105 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RDV84_02005 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RDV84_24145 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RDV84_16415 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RDV84_16735 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D RDV84_18970 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RDV84_23410 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RDV84_15760 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RDV84_15790 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RDV84_06890 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RDV84_12010 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RDV84_15515 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RDV84_23605 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RDV84_23955 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RDV84_23720 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RDV84_14320 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_23260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_07370 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D RDV84_07365 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D RDV84_07375 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D RDV84_16550 recA; recombinase RecA K03553 recA; recombination protein RecA
D RDV84_12655 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RDV84_12670 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RDV84_12650 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RDV84_08975 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RDV84_16270 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D RDV84_06895 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RDV84_01960 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RDV84_23550 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RDV84_23705 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D RDV84_21060 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RDV84_05935 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D RDV84_00355 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D RDV84_21525 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D RDV84_14335 Ku protein K10979 ku; DNA end-binding protein Ku
D RDV84_14330 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D RDV84_18655 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RDV84_06905 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RDV84_04900 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RDV84_20240 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RDV84_15655 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RDV84_02710 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RDV84_14935 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RDV84_17805 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RDV84_13105 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RDV84_04745 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_11975 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_12745 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_12845 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_13070 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D RDV84_07155 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RDV84_02155 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RDV84_16540 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RDV84_21170 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RDV84_21185 DNA polymerase Y family protein K14161 imuB; protein ImuB
D RDV84_21190 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RDV84_16555 recX; recombination regulator RecX K03565 recX; regulatory protein
D RDV84_06060 UvrD-helicase domain-containing protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D RDV84_13155 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D RDV84_20520 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D RDV84_10890 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RDV84_01755 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RDV84_01765 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:lya03029]
D RDV84_14745 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RDV84_21310 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RDV84_14905 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RDV84_15905 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D RDV84_13910 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RDV84_13975 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RDV84_13970 fusA; elongation factor G K02355 fusA; elongation factor G
D RDV84_00025 fusA; elongation factor G K02355 fusA; elongation factor G
D RDV84_00370 fusA; elongation factor G K02355 fusA; elongation factor G
D RDV84_23555 era; GTPase Era K03595 era; GTPase
D RDV84_05300 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RDV84_15505 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RDV84_12615 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RDV84_05365 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RDV84_20345 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D RDV84_14320 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_23260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RDV84_15830 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D RDV84_21045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RDV84_21050 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RDV84_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RDV84_02600 co-chaperone GroES K04078 groES; chaperonin GroES
D RDV84_21040 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RDV84_04365 glutaredoxin domain-containing protein K07390 grxD; monothiol glutaredoxin
D RDV84_09305 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D RDV84_14805 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D RDV84_16770 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RDV84_05135 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RDV84_05165 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D RDV84_05140 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RDV84_06870 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RDV84_05150 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D RDV84_20440 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D RDV84_07825 SCO family protein K07152 SCO1; protein SCO1
D RDV84_21490 SCO family protein K07152 SCO1; protein SCO1
D RDV84_20895 ATP-binding protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:lya02000]
D RDV84_17300 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RDV84_14450 ABC transporter ATP-binding protein K18104 abcA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2]
D RDV84_11330 ABC transporter ATP-binding protein/permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D RDV84_14895 ABC transporter ATP-binding protein/permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D RDV84_02160 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D RDV84_17125 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RDV84_19775 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RDV84_23455 ABC transporter transmembrane domain-containing protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RDV84_19675 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RDV84_19570 multidrug ABC transporter permease/ATP-binding protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D RDV84_16940 ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D RDV84_08460 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D RDV84_08455 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D RDV84_08450 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D RDV84_08445 sulfate/molybdate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D RDV84_01820 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RDV84_01825 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D RDV84_01830 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RDV84_09370 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D RDV84_20570 polyamine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein
D RDV84_20585 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein
D RDV84_20580 ABC transporter permease subunit K11075 potH; putrescine transport system permease protein
D RDV84_20575 ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D RDV84_08020 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RDV84_08015 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RDV84_18545 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RDV84_07350 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RDV84_11910 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RDV84_07355 MlaE family lipid ABC transporter permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RDV84_11925 MlaE family lipid ABC transporter permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RDV84_07360 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RDV84_11920 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RDV84_11905 ABC-type transport auxiliary lipoprotein family protein K18480 linN; cholesterol transport system auxiliary component
D RDV84_07345 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RDV84_07340 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D RDV84_18510 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RDV84_18515 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D RDV84_18520 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RDV84_16070 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_16075 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_16120 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein
D RDV84_16065 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D RDV84_16060 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D RDV84_16055 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RDV84_04910 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RDV84_04920 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D RDV84_08480 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RDV84_08485 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RDV84_00940 cobalamin-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D RDV84_11795 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RDV84_13570 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RDV84_11800 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RDV84_13575 ATP-binding cassette domain-containing protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RDV84_12025 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D RDV84_12030 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D RDV84_00785 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RDV84_21625 ABC transporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D RDV84_06830 ABC transporter permease K09696 natB; sodium transport system permease protein
D RDV84_06825 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D RDV84_17275 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D RDV84_17280 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RDV84_18275 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D RDV84_18280 ccmC; heme ABC transporter permease CcmC K02195 ccmC; heme exporter protein C
D RDV84_18285 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D RDV84_18290 ccmA; heme ABC exporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RDV84_08775 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RDV84_08770 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RDV84_19730 ABC-2 family transporter protein K25154 evrC; viologen exporter family transport system permease protein
D RDV84_19725 ABC-2 family transporter protein K25155 evrB; viologen exporter family transport system permease protein
D RDV84_19720 ATP-binding cassette domain-containing protein K25156 evrA; viologen exporter family transport system ATP-binding protein
D RDV84_06805 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RDV84_08285 DUF3526 domain-containing protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D RDV84_08290 DUF3526 domain-containing protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D RDV84_09670 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RDV84_10910 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RDV84_14715 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RDV84_18825 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RDV84_21620 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RDV84_05785 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RDV84_06810 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RDV84_08280 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RDV84_09665 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RDV84_14710 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RDV84_18830 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RDV84_07430 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_10820 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_10825 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_13335 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_19830 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_19835 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_03010 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_03015 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_03200 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D RDV84_07450 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RDV84_10830 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RDV84_11950 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RDV84_13330 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RDV84_19845 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RDV84_03005 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RDV84_03205 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RDV84_00485 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D RDV84_05120 bile acid:sodium symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D RDV84_09000 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D RDV84_25240 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D RDV84_16380 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D RDV84_21275 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D RDV84_04780 sugar MFS transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D RDV84_19700 MFS transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D RDV84_14225 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D RDV84_13475 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RDV84_09765 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D RDV84_05320 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RDV84_06135 TCR/Tet family MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D RDV84_07640 TCR/Tet family MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D RDV84_24435 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RDV84_08320 MFS transporter K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D RDV84_09545 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RDV84_25525 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RDV84_01215 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RDV84_06850 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RDV84_16310 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D RDV84_22740 MFS transporter K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein
D RDV84_20470 MFS transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D RDV84_20265 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D RDV84_00835 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RDV84_00830 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RDV84_00825 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RDV84_00800 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D RDV84_24175 aqpZ; aquaporin Z K06188 aqpZ; aquaporin Z
D RDV84_02475 MIP/aquaporin family protein K02440 glpF; glycerol uptake facilitator
D RDV84_06490 potassium channel family protein K10716 kch; voltage-gated potassium channel
D RDV84_02225 ion transporter K10716 kch; voltage-gated potassium channel
D RDV84_07780 ammonium transporter K03320 amt; ammonium transporter, Amt family
D RDV84_09400 glutathione S-transferase C-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_11120 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_11160 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_16925 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_16975 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_17215 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_00055 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_04275 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RDV84_14755 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
D RDV84_09680 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D RDV84_17390 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D RDV84_23425 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D RDV84_01870 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D RDV84_01875 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D RDV84_01630 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D RDV84_18015 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D RDV84_00840 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D RDV84_06930 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D RDV84_17290 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D RDV84_19660 exbB; tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB
D RDV84_20630 DUF2341 domain-containing protein K03561 exbB; biopolymer transport protein ExbB
D RDV84_06935 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RDV84_06940 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RDV84_06945 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RDV84_17295 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RDV84_19665 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D RDV84_20625 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RDV84_12680 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D RDV84_12685 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR
D RDV84_04670 CorA family divalent cation transporter K03284 corA; magnesium transporter
D RDV84_14615 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter
D RDV84_20365 transporter K16074 zntB; zinc transporter
D RDV84_19225 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter
D RDV84_15240 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RDV84_08465 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D RDV84_09355 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D RDV84_13230 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D RDV84_14215 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D RDV84_16080 OprO/OprP family phosphate-selective porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D RDV84_20150 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D RDV84_16150 hypothetical protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RDV84_20325 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RDV84_25500 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RDV84_04205 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RDV84_05215 outer membrane protein transport protein K06076 fadL; long-chain fatty acid transport protein
D RDV84_05995 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein
D RDV84_06370 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein
D RDV84_10285 S8 family serine peptidase K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D RDV84_01575 autotransporter domain-containing protein K12686 apeE; outer membrane lipase/esterase
D RDV84_00525 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D RDV84_12510 btuB; TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D RDV84_02925 btuB; TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D RDV84_20315 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D RDV84_20400 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D RDV84_19630 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RDV84_19645 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RDV84_01340 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RDV84_03375 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RDV84_04990 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_05035 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_05590 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_06600 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_07990 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_08275 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_10255 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_12505 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_12595 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_14230 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_14425 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_14530 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_17085 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_18095 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_19615 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_19705 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_19945 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_20235 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_24540 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_24985 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_25075 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_25320 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_00020 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_00435 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_01155 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_01380 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_02210 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_02345 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_02830 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_00735 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_01970 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_03440 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_04940 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_07795 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_08130 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_16525 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_21215 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_25350 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RDV84_10385 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D RDV84_02505 TolC family outer membrane protein K12340 tolC; outer membrane protein
D RDV84_07405 efflux transporter outer membrane subunit K18300 oprN; outer membrane protein, multidrug efflux system
D RDV84_06550 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D RDV84_09800 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D RDV84_20050 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein
D RDV84_20900 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein
D RDV84_15830 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D RDV84_17895 bamB; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D RDV84_12455 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D RDV84_21070 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D RDV84_05865 outer membrane protein assembly factor K07278 tamA; translocation and assembly module TamA
D RDV84_05860 translocation/assembly module TamB domain-containing protein K09800 tamB; translocation and assembly module TamB
D RDV84_08495 YadA-like family protein K21449 ata; trimeric autotransporter adhesin
D RDV84_17060 YadA-like family protein K21449 ata; trimeric autotransporter adhesin
D RDV84_00780 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D RDV84_00775 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D RDV84_13435 lptD; LPS assembly protein LptD K04744 lptD; LPS-assembly protein
D RDV84_15510 lptE; LPS assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein
D RDV84_14625 transporter associated domain-containing protein K06189 corC; hemolysin (HlyC) family protein
D RDV84_04935 MFS transporter K16211 malY; maltose/moltooligosaccharide transporter
D RDV84_15860 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D RDV84_20185 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family
D RDV84_10375 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D RDV84_02485 efflux RND transporter permease subunit K18303 mexK; multidrug efflux pump
D RDV84_09795 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_01665 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_03910 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_07400 multidrug efflux RND transporter permease subunit K19585 oqxB; multidrug efflux pump
D RDV84_19395 multidrug efflux RND transporter permease subunit K07788 mdtB; multidrug efflux pump
D RDV84_19390 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump
D RDV84_11590 SMR family transporter K03297 emrE; small multidrug resistance pump
D RDV84_09405 multidrug efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D RDV84_16005 sugE; quaternary ammonium compound efflux SMR transporter SugE K11741 sugE; quaternary ammonium compound-resistance protein SugE
D RDV84_09035 EamA family transporter K08978 TC.BAT1; bacterial/archaeal transporter family protein
D RDV84_11570 DMT family transporter K15268 eamA; O-acetylserine/cysteine efflux transporter
D RDV84_10810 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D RDV84_13280 YnfA family protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D RDV84_15345 BCCT family transporter K05020 opuD; glycine betaine transporter
D RDV84_11555 sodium:calcium antiporter K07301 yrbG; cation:H+ antiporter
D RDV84_11560 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D RDV84_08705 monovalent cation:proton antiporter-2 (CPA2) family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D RDV84_15970 monovalent cation:proton antiporter-2 (CPA2) family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D RDV84_12580 ybaL; YbaL family putative K(+) efflux transporter K26735 KEA4_5_6; K+:H+ antiporter
D RDV84_12480 hypothetical protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D RDV84_20355 benzoate/H(+) symporter BenE family transporter K05782 benE; benzoate membrane transport protein
D RDV84_04515 chrA; chromate efflux transporter K07240 chrA; chromate transporter
D RDV84_04500 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter
D RDV84_16185 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RDV84_07625 AEC family transporter K24180 mleP; malate permease and related proteins
D RDV84_03885 LysE/ArgO family amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RDV84_17655 LysE family transporter K05835 rhtC; threonine efflux protein
D RDV84_15445 queuosine precursor transporter K09125 yhhQ; queuosine precursor transporter
D RDV84_04915 VIT family protein K22736 VIT; vacuolar iron transporter family protein
D RDV84_12325 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D RDV84_01360 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D RDV84_14610 carbon starvation CstA family protein K23676 btsT; pyruvate/proton symporter
D RDV84_06835 energy transducer TonB K03832 tonB; periplasmic protein TonB
D RDV84_06925 energy transducer TonB K03832 tonB; periplasmic protein TonB
D RDV84_10395 energy transducer TonB K03832 tonB; periplasmic protein TonB
D RDV84_13180 energy transducer TonB K03832 tonB; periplasmic protein TonB
D RDV84_15685 TonB family protein K03832 tonB; periplasmic protein TonB
D RDV84_17710 energy transducer TonB K03832 tonB; periplasmic protein TonB
D RDV84_19670 TonB family protein K03832 tonB; periplasmic protein TonB
D RDV84_20620 TonB family protein K03832 tonB; periplasmic protein TonB
D RDV84_03390 TonB family protein K03832 tonB; periplasmic protein TonB
D RDV84_17560 energy transducer TonB K03832 tonB; periplasmic protein TonB
D RDV84_12705 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein
D RDV84_12690 cell envelope integrity protein TolA K03646 tolA; colicin import membrane protein
D RDV84_12700 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D RDV84_16320 efflux RND transporter periplasmic adaptor subunit K03543 emrA; membrane fusion protein, multidrug efflux system
D RDV84_10380 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D RDV84_02490 efflux RND transporter periplasmic adaptor subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D RDV84_09790 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_01675 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_03905 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_17740 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_07395 efflux RND transporter periplasmic adaptor subunit K19586 oqxA; membrane fusion protein, multidrug efflux system
D RDV84_19400 efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D RDV84_20915 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RDV84_22350 FeoA family protein K04758 feoA; ferrous iron transport protein A
D RDV84_22345 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D RDV84_18265 heme lyase CcmF/NrfE family subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D RDV84_08010 MgtC/SapB family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D RDV84_20245 MgtC/SapB family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D RDV84_24580 MipA/OmpV family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:lya02044]
D RDV84_02505 TolC family outer membrane protein K12340 tolC; outer membrane protein
D RDV84_12120 gspD; type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D
D RDV84_12065 gspE; type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D RDV84_12075 type II secretion system F family protein K02455 gspF; general secretion pathway protein F
D RDV84_12080 gspG; type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G
D RDV84_15330 type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
D RDV84_12085 GspH/FimT family pseudopilin K02457 gspH; general secretion pathway protein H
D RDV84_12090 prepilin-type N-terminal cleavage/methylation domain-containing protein K02458 gspI; general secretion pathway protein I
D RDV84_12095 prepilin-type N-terminal cleavage/methylation domain-containing protein K02459 gspJ; general secretion pathway protein J
D RDV84_12100 type II secretion system protein GspK K02460 gspK; general secretion pathway protein K
D RDV84_12105 PilN domain-containing protein K02461 gspL; general secretion pathway protein L
D RDV84_12110 gspM; type II secretion system protein GspM K02462 gspM; general secretion pathway protein M
D RDV84_12115 hypothetical protein K02463 gspN; general secretion pathway protein N
D RDV84_12390 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RDV84_12415 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RDV84_12400 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D RDV84_12395 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D RDV84_12410 pilin K02655 pilE; type IV pilus assembly protein PilE
D RDV84_14660 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE
D RDV84_14870 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE
D RDV84_17880 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D RDV84_13190 pilG; twitching motility response regulator PilG K02657 pilG; twitching motility two-component system response regulator PilG
D RDV84_13195 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RDV84_18735 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RDV84_13200 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D RDV84_13205 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D RDV84_01915 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RDV84_01910 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN
D RDV84_01905 pilO; type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D RDV84_01900 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D RDV84_01895 pilQ; type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D RDV84_00905 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D RDV84_11760 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU
D RDV84_00900 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU
D RDV84_14640 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D RDV84_14850 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D RDV84_14645 PilW family protein K02672 pilW; type IV pilus assembly protein PilW
D RDV84_14855 PilW family protein K02672 pilW; type IV pilus assembly protein PilW
D RDV84_14650 PilX N-terminal domain-containing pilus assembly protein K02673 pilX; type IV pilus assembly protein PilX
D RDV84_14860 PilX N-terminal domain-containing pilus assembly protein K02673 pilX; type IV pilus assembly protein PilX
D RDV84_14655 PilC/PilY family type IV pilus protein K02674 pilY1; type IV pilus assembly protein PilY1
D RDV84_14865 PilC/PilY family type IV pilus protein K02674 pilY1; type IV pilus assembly protein PilY1
D RDV84_23600 PilZ domain-containing protein K02676 pilZ; type IV pilus assembly protein PilZ
D RDV84_14630 GspH/FimT family protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D RDV84_14635 GspH/FimT family pseudopilin K08084 fimT; type IV fimbrial biogenesis protein FimT
D RDV84_14840 GspH/FimT family protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D RDV84_14845 GspH/FimT family pseudopilin K08084 fimT; type IV fimbrial biogenesis protein FimT
D RDV84_21465 FimV/HubP family polar landmark protein K08086 fimV; pilus assembly protein FimV
D RDV84_00565 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA
D RDV84_17285 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D RDV84_07910 sctJ; type III secretion inner membrane ring lipoprotein SctJ K03222 yscJ; type III secretion protein J
D RDV84_07920 FliH/SctL family protein K03223 yscL; type III secretion protein L
D RDV84_07925 FliI/YscN family ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D RDV84_07860 sctQ; type III secretion system cytoplasmic ring protein SctQ K03225 yscQ; type III secretion protein Q
D RDV84_07855 EscR/YscR/HrcR family type III secretion system export apparatus protein K03226 yscR; type III secretion protein R
D RDV84_07850 sctS; type III secretion system export apparatus subunit SctS K03227 yscS; type III secretion protein S
D RDV84_07845 sctT; type III secretion system export apparatus subunit SctT K03228 yscT; type III secretion protein T
D RDV84_07840 sctU; type III secretion system export apparatus subunit SctU K03229 yscU; type III secretion protein U
D RDV84_07890 flagellar biosynthesis protein FlhA K03230 yscV; type III secretion protein V
D RDV84_10075 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RDV84_10080 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D RDV84_10030 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RDV84_10020 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D RDV84_10015 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RDV84_09985 FliM/FliN family flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D RDV84_07885 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RDV84_09980 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D RDV84_09975 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RDV84_10090 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RDV84_10085 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RDV84_18330 lytic transglycosylase domain-containing protein K03194 virB1; type IV secretion system protein VirB1
D RDV84_18335 TrbC/VirB2 family protein K03197 virB2; type IV secretion system protein VirB2
D RDV84_18340 VirB3 family type IV secretion system protein K03198 virB3; type IV secretion system protein VirB3
D RDV84_18345 VirB4 family type IV secretion/conjugal transfer ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RDV84_18360 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D RDV84_21830 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D RDV84_21850 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D RDV84_24470 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D RDV84_18310 type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8
D RDV84_18315 TrbG/VirB9 family P-type conjugative transfer protein K03204 virB9; type IV secretion system protein VirB9
D RDV84_18320 TrbI/VirB10 family protein K03195 virB10; type IV secretion system protein VirB10
D RDV84_18325 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RDV84_18425 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RDV84_12045 DsbC family protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RDV84_12050 DsbC family protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RDV84_10285 S8 family serine peptidase K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D RDV84_01575 autotransporter domain-containing protein K12686 apeE; outer membrane lipase/esterase
D RDV84_19455 tssM; type VI secretion system membrane subunit TssM K11891 impL; type VI secretion system protein ImpL
D RDV84_04215 tssM; type VI secretion system membrane subunit TssM K11891 impL; type VI secretion system protein ImpL
D RDV84_19460 tssL; type VI secretion system protein TssL, long form K11892 impK; type VI secretion system protein ImpK
D RDV84_04135 icmH; type IVB secretion system protein IcmH/DotU K11892 impK; type VI secretion system protein ImpK
D RDV84_19465 tssK; type VI secretion system baseplate subunit TssK K11893 impJ; type VI secretion system protein ImpJ
D RDV84_04130 tssK; type VI secretion system baseplate subunit TssK K11893 impJ; type VI secretion system protein ImpJ
D RDV84_19495 tssG; type VI secretion system baseplate subunit TssG K11895 impH; type VI secretion system protein ImpH
D RDV84_04090 tssG; type VI secretion system baseplate subunit TssG K11895 impH; type VI secretion system protein ImpH
D RDV84_19500 tssF; type VI secretion system baseplate subunit TssF K11896 impG; type VI secretion system protein ImpG
D RDV84_04095 tssF; type VI secretion system baseplate subunit TssF K11896 impG; type VI secretion system protein ImpG
D RDV84_19505 tssE; type VI secretion system baseplate subunit TssE K11897 impF; type VI secretion system protein ImpF
D RDV84_04100 tssE; type VI secretion system baseplate subunit TssE K11897 impF; type VI secretion system protein ImpF
D RDV84_19520 tssC; type VI secretion system contractile sheath large subunit K11900 impC; type VI secretion system protein ImpC
D RDV84_04110 tssC; type VI secretion system contractile sheath large subunit K11900 impC; type VI secretion system protein ImpC
D RDV84_19525 tssB; type VI secretion system contractile sheath small subunit K11901 impB; type VI secretion system protein ImpB
D RDV84_04115 tssB; type VI secretion system contractile sheath small subunit K11901 impB; type VI secretion system protein ImpB
D RDV84_19430 tssA; type VI secretion system protein TssA K11902 impA; type VI secretion system protein ImpA
D RDV84_04175 tssA; type VI secretion system protein TssA K11902 impA; type VI secretion system protein ImpA
D RDV84_19515 type VI secretion system tube protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp
D RDV84_04105 type VI secretion system tube protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp
D RDV84_06445 tssI; type VI secretion system tip protein TssI/VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D RDV84_19480 tssI; type VI secretion system tip protein TssI/VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D RDV84_04140 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D RDV84_04125 tssJ; type VI secretion system lipoprotein TssJ K11906 vasD; type VI secretion system protein VasD
D RDV84_19490 tssH; type VI secretion system ATPase TssH K11907 vasG; type VI secretion system protein VasG
D RDV84_04085 tssH; type VI secretion system ATPase TssH K11907 vasG; type VI secretion system protein VasG
D RDV84_19450 tagF; type VI secretion system-associated protein TagF K11890 impM; type VI secretion system protein ImpM
D RDV84_04210 tagF; type VI secretion system-associated protein TagF K11890 impM; type VI secretion system protein ImpM
D RDV84_19470 tagH; type VI secretion system-associated FHA domain protein TagH K11894 impI; type VI secretion system protein ImpI
D RDV84_19510 type VI secretion system accessory protein TagJ K11898 impE; type VI secretion system protein ImpE
D RDV84_15460 bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D RDV84_06335 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D RDV84_06360 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D RDV84_10965 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D RDV84_03975 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D RDV84_05990 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D RDV84_05995 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein
D RDV84_06370 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein
D RDV84_06000 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RDV84_05985 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RDV84_12375 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RDV84_08250 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RDV84_15190 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RDV84_13920 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RDV84_15195 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RDV84_21405 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RDV84_14085 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RDV84_16345 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RDV84_15090 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RDV84_15185 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RDV84_06870 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RDV84_05910 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RDV84_05905 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D RDV84_05900 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:lya02042]
D RDV84_15240 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RDV84_19535 hemolysin III family protein K11068 hlyIII; hemolysin III
D RDV84_01115 hemolysin III family protein K11068 hlyIII; hemolysin III
D RDV84_22485 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D RDV84_24425 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D RDV84_05505 collagenase K01387 colA; microbial collagenase [EC:3.4.24.3]
C 02022 Two-component system [BR:lya02022]
D RDV84_24020 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RDV84_24015 phoB; phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D RDV84_11380 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D RDV84_11375 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP
D RDV84_23095 ATP-binding protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D RDV84_23100 winged helix-turn-helix domain-containing protein K07661 rstA; two-component system, OmpR family, response regulator RstA
D RDV84_24100 creC; two-component system sensor histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D RDV84_24105 creB; two-component system response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D RDV84_23125 heavy metal sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RDV84_23130 heavy metal response regulator transcription factor K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RDV84_16590 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D RDV84_16585 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D RDV84_09365 sensor histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D RDV84_09360 response regulator transcription factor K07774 tctD; two-component system, OmpR family, response regulator TctD
D RDV84_08870 ATP-binding protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RDV84_09520 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RDV84_07295 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RDV84_08875 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D RDV84_11635 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RDV84_17610 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D RDV84_03305 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RDV84_19190 response regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D RDV84_06230 response regulator transcription factor K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RDV84_17690 response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RDV84_03590 response regulator transcription factor K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RDV84_07675 ATP-binding protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D RDV84_15160 sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RDV84_15165 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR
D RDV84_10405 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D RDV84_10410 LytTR family DNA-binding domain-containing protein K08083 algR; two-component system, LytTR family, response regulator AlgR
D RDV84_08170 ATP-binding protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RDV84_08175 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D RDV84_12425 histidine kinase dimerization/phospho-acceptor domain-containing protein K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D RDV84_12420 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D RDV84_16305 hydrogenase maturation protein K19640 hypX; putative two-component system protein, hydrogenase maturation factor HypX/HoxX
D RDV84_13235 ATP-binding protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RDV84_13240 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RDV84_13210 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D RDV84_13190 pilG; twitching motility response regulator PilG K02657 pilG; twitching motility two-component system response regulator PilG
D RDV84_13195 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RDV84_18735 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RDV84_13215 chemotaxis protein CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D RDV84_20080 hybrid sensor histidine kinase/response regulator K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D RDV84_20090 diguanylate cyclase K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65]
D RDV84_20085 chemotaxis response regulator protein-glutamate methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D RDV84_20820 ATP-binding protein K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D RDV84_20825 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D RDV84_20445 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D RDV84_21205 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D RDV84_07815 response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D RDV84_20450 response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D RDV84_21200 response regulator K15012 regA; two-component system, response regulator RegA
D RDV84_00720 tetratricopeptide repeat protein K19694 chiS; two-component system, sensor histidine kinase ChiS
D RDV84_06760 hybrid sensor histidine kinase/response regulator K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:lya02035]
D RDV84_13235 ATP-binding protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RDV84_13240 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RDV84_17995 Cache 3/Cache 2 fusion domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D RDV84_10020 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D RDV84_10015 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RDV84_07885 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RDV84_09980 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D RDV84_09975 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RDV84_10090 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RDV84_10085 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RDV84_10075 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RDV84_10080 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D RDV84_09985 FliM/FliN family flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D RDV84_10030 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RDV84_10050 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D RDV84_08165 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D RDV84_10055 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D RDV84_10035 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D RDV84_10045 hypothetical protein K02387 flgB; flagellar basal-body rod protein FlgB
D RDV84_10040 flagellar basal body rod C-terminal domain-containing protein K02388 flgC; flagellar basal-body rod protein FlgC
D RDV84_10000 flagellar hook capping FlgD N-terminal domain-containing protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D RDV84_10070 flagellar hook basal-body protein K02391 flgF; flagellar basal-body rod protein FlgF
D RDV84_10065 flagellar hook-basal body protein K02392 flgG; flagellar basal-body rod protein FlgG
D RDV84_09995 flagellar hook-basal body complex protein K02390 flgE; flagellar hook protein FlgE
D RDV84_09970 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RDV84_13190 pilG; twitching motility response regulator PilG K02657 pilG; twitching motility two-component system response regulator PilG
D RDV84_13195 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RDV84_18735 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RDV84_13200 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D RDV84_13205 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D RDV84_13210 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D RDV84_12420 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D RDV84_12425 histidine kinase dimerization/phospho-acceptor domain-containing protein K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D RDV84_00905 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D RDV84_11760 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU
D RDV84_00900 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU
D RDV84_13215 chemotaxis protein CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D RDV84_13220 chemotaxis protein CheW K06598 chpC; chemosensory pili system protein ChpC
D RDV84_12415 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RDV84_12400 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D RDV84_12395 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D RDV84_12390 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RDV84_17880 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D RDV84_01895 pilQ; type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D RDV84_01900 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D RDV84_01905 pilO; type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D RDV84_01910 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN
D RDV84_01915 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RDV84_23600 PilZ domain-containing protein K02676 pilZ; type IV pilus assembly protein PilZ
D RDV84_14640 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D RDV84_14850 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D RDV84_14645 PilW family protein K02672 pilW; type IV pilus assembly protein PilW
D RDV84_14855 PilW family protein K02672 pilW; type IV pilus assembly protein PilW
D RDV84_14650 PilX N-terminal domain-containing pilus assembly protein K02673 pilX; type IV pilus assembly protein PilX
D RDV84_14860 PilX N-terminal domain-containing pilus assembly protein K02673 pilX; type IV pilus assembly protein PilX
D RDV84_14655 PilC/PilY family type IV pilus protein K02674 pilY1; type IV pilus assembly protein PilY1
D RDV84_14865 PilC/PilY family type IV pilus protein K02674 pilY1; type IV pilus assembly protein PilY1
D RDV84_12410 pilin K02655 pilE; type IV pilus assembly protein PilE
D RDV84_14660 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE
D RDV84_14870 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE
D RDV84_06335 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D RDV84_06360 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D RDV84_10965 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D RDV84_03975 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D RDV84_05990 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D RDV84_05995 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein
D RDV84_06370 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein
D RDV84_06000 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RDV84_05985 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins [BR:lya03037]
D RDV84_00075 suppressor of fused domain protein K06229 SUFU; suppressor of fused
C 04812 Cytoskeleton proteins [BR:lya04812]
D RDV84_10590 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RDV84_12355 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RDV84_12350 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RDV84_24340 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D RDV84_24345 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D RDV84_24350 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D RDV84_05670 AAA family ATPase K03496 parA; chromosome partitioning protein
D RDV84_07615 ParA family protein K03496 parA; chromosome partitioning protein
D RDV84_05675 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RDV84_23795 plasmid partitioning protein RepB C-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:lya04147]
D RDV84_20895 ATP-binding protein K04079 HSP90A; molecular chaperone HtpG
D RDV84_01695 class I fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RDV84_24750 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RDV84_01795 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RDV84_01735 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RDV84_01710 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RDV84_05100 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RDV84_24535 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RDV84_25295 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RDV84_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RDV84_21045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RDV84_16705 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RDV84_08620 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RDV84_25365 DPP IV N-terminal domain-containing protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RDV84_17950 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RDV84_13910 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RDV84_13975 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RDV84_23700 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RDV84_02215 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RDV84_05120 bile acid:sodium symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D RDV84_20810 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_03635 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RDV84_08195 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_22275 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RDV84_24365 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D RDV84_01460 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RDV84_02270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RDV84_13515 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RDV84_22860 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RDV84_22890 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RDV84_11785 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RDV84_07080 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RDV84_07140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RDV84_08085 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D RDV84_08090 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D RDV84_02480 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RDV84_07760 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RDV84_08440 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RDV84_11535 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RDV84_17715 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D RDV84_11095 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_24930 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_25405 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RDV84_02760 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RDV84_18755 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_03105 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RDV84_11855 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D RDV84_07545 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RDV84_18540 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RDV84_21410 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:lya02048]
D RDV84_20770 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K19156 prlF; antitoxin PrlF
D RDV84_12355 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RDV84_10590 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RDV84_23145 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RDV84_24805 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RDV84_25340 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RDV84_17270 hypothetical protein K19168 cptA; toxin CptA
D RDV84_17265 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:lya04052]
D RDV84_25175 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:lya04090]
D RDV84_08620 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RDV84_25365 DPP IV N-terminal domain-containing protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RDV84_24365 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
C 01504 Antimicrobial resistance genes [BR:lya01504]
D RDV84_00945 GNAT family N-acetyltransferase K18816 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82]
D RDV84_05795 kanamycin nucleotidyltransferase C-terminal domain-containing protein K17882 aadD; kanamycin nucleotidyltransferase [EC:2.7.7.-]
D RDV84_19680 kanamycin nucleotidyltransferase C-terminal domain-containing protein K17882 aadD; kanamycin nucleotidyltransferase [EC:2.7.7.-]
D RDV84_06545 aminoglycoside phosphotransferase family protein K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D RDV84_06135 TCR/Tet family MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D RDV84_07640 TCR/Tet family MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D RDV84_20395 M23/M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_18605 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_01835 TonB family protein K02172 blaR1; bla regulator protein blaR1
D RDV84_15870 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RDV84_20390 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_01840 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_18610 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RDV84_11035 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D RDV84_23125 heavy metal sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RDV84_23130 heavy metal response regulator transcription factor K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RDV84_24300 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RDV84_10225 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RDV84_11380 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D RDV84_11375 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP
D RDV84_09790 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_01675 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_03905 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_17740 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RDV84_09795 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_01665 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_03910 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RDV84_06550 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D RDV84_09800 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D RDV84_07405 efflux transporter outer membrane subunit K18300 oprN; outer membrane protein, multidrug efflux system
D RDV84_02495 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D RDV84_02490 efflux RND transporter periplasmic adaptor subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D RDV84_02485 efflux RND transporter permease subunit K18303 mexK; multidrug efflux pump
D RDV84_20530 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RDV84_02090 MerR family DNA-binding protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RDV84_02505 TolC family outer membrane protein K12340 tolC; outer membrane protein
D RDV84_14450 ABC transporter ATP-binding protein K18104 abcA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:lya00536]
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:lya00537]
D RDV84_11095 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_24930 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RDV84_05100 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RDV84_24535 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RDV84_25295 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:lya03100]
D RDV84_02180 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_05290 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_18035 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_18045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_23040 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RDV84_06225 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_15550 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_16575 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_16580 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_23310 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RDV84_14835 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RDV84_15665 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RDV84_15670 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RDV84_17335 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RDV84_11740 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RDV84_13870 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RDV84_16675 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RDV84_18040 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RDV84_18050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RDV84_17330 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_17340 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_17345 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_01570 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_13900 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RDV84_15555 tRNA-His K14226 tRNA-His; tRNA His
D RDV84_05285 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RDV84_02175 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RDV84_06025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_06030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_06035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_06040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_06045 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_15625 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_17375 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_18170 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_21400 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_23105 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RDV84_12735 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RDV84_15560 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RDV84_04760 tRNA-Ile K14230 tRNA-Met; tRNA Met
D RDV84_21325 tRNA-Met K14230 tRNA-Met; tRNA Met
D RDV84_02895 tRNA-Met K14230 tRNA-Met; tRNA Met
D RDV84_15045 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RDV84_22620 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RDV84_14945 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RDV84_15545 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RDV84_16570 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RDV84_23945 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RDV84_17590 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RDV84_23725 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RDV84_13905 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RDV84_11420 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RDV84_16240 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RDV84_13915 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RDV84_13895 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RDV84_14880 tRNA-Val K14237 tRNA-Val; tRNA Val
D RDV84_15660 tRNA-Val K14237 tRNA-Val; tRNA Val
D RDV84_17460 tRNA-Val K14237 tRNA-Val; tRNA Val
D RDV84_05295 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RDV84_02185 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RDV84_02170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RDV84_05280 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RDV84_05275 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RDV84_02165 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RDV84_23885 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D RDV84_12280 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D RDV84_21110 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RDV84_06855 dkgB; 2,5-didehydrogluconate reductase DkgB K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D RDV84_05560 oleD; 2-alkyl-3-oxoalkanoate reductase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D RDV84_19370 GMC family oxidoreductase K26059 gtd1; glucoside 3-dehydrogenase (cytochrome c) catalytic subunit [EC:1.1.2.11]
D RDV84_11280 PQQ-dependent sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D RDV84_17120 PQQ-dependent sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D RDV84_08370 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D RDV84_07515 indolepyruvate ferredoxin oxidoreductase family protein K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D RDV84_00045 NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D RDV84_01435 NADP-dependent oxidoreductase K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]
D RDV84_14145 pqqC; pyrroloquinoline-quinone synthase PqqC K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D RDV84_10350 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D RDV84_10355 xanthine dehydrogenase family protein molybdopterin-binding subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D RDV84_22825 acyl-CoA dehydrogenase family protein K00257 mbtN; acyl-ACP dehydrogenase [EC:1.3.99.-]
D RDV84_11895 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D RDV84_00010 zinc-binding alcohol dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RDV84_08815 NAD(P)H-dependent oxidoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D RDV84_17580 NAD(P)H-dependent oxidoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D RDV84_17650 NAD(P)H-dependent oxidoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D RDV84_13525 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RDV84_13440 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RDV84_08625 glutathione binding-like protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D RDV84_08905 glutathione binding-like protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D RDV84_17535 msrP; protein-methionine-sulfoxide reductase catalytic subunit MsrP K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D RDV84_20295 cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D RDV84_03605 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D RDV84_16645 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RDV84_08750 Ohr family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RDV84_10240 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RDV84_00095 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RDV84_13545 carboxymuconolactone decarboxylase family protein K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]
D RDV84_13540 peroxiredoxin K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D RDV84_22665 Dyp-type peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D RDV84_24185 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RDV84_02545 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RDV84_03600 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RDV84_18240 cysteine dioxygenase family protein K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91]
D RDV84_00530 Fe2+-dependent dioxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D RDV84_20330 hmpA; NO-inducible flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D RDV84_16515 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RDV84_17110 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RDV84_04505 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D RDV84_14365 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D RDV84_17455 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D RDV84_04495 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D RDV84_14135 pqqE; pyrroloquinoline quinone biosynthesis protein PqqE K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4]
D RDV84_24705 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D RDV84_02500 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D RDV84_17025 cfa; cyclopropane fatty acyl phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D RDV84_08135 trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D RDV84_19905 TylF/MycF/NovP-related O-methyltransferase K05303 K05303; O-methyltransferase [EC:2.1.1.-]
D RDV84_19795 carbamoyltransferase C-terminal domain-containing protein K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D RDV84_25200 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D RDV84_09610 arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D RDV84_16460 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RDV84_15065 N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D RDV84_16010 acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D RDV84_11325 GNAT family N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D RDV84_22460 GNAT family N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D RDV84_07765 GNAT family N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D RDV84_10715 GNAT family N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D RDV84_23140 glutaminyl-peptide cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D RDV84_20700 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D RDV84_23690 DUF3488 and transglutaminase-like domain-containing protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D RDV84_24235 arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D RDV84_08340 3-oxoacyl-ACP synthase III K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D RDV84_13380 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RDV84_00550 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D RDV84_11395 DegV family protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D RDV84_18025 pyruvate, water dikinase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D RDV84_02565 glnE; bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D RDV84_16930 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D RDV84_19440 serine/threonine-protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1]
D RDV84_06710 aceK; bifunctional isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D RDV84_00805 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D RDV84_14210 PAS-domain containing protein K10819 E2.7.13.3; histidine kinase [EC:2.7.13.3]
D RDV84_19890 Stf0 family sulfotransferase K21014 stf0; trehalose 2-sulfotransferase [EC:2.8.2.37]
D RDV84_23780 macro domain-containing protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D RDV84_00640 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D RDV84_12675 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RDV84_16140 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RDV84_07610 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D RDV84_06780 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RDV84_17190 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RDV84_11250 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RDV84_24210 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RDV84_04870 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RDV84_22675 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D RDV84_04145 protein-arginine deiminase family protein K01481 E3.5.3.15; protein-arginine deiminase [EC:3.5.3.15]
D RDV84_06015 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D RDV84_17925 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D RDV84_23670 Maf family nucleotide pyrophosphatase K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D RDV84_08405 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RDV84_15285 AAA family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RDV84_19035 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RDV84_23680 AAA family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RDV84_01890 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RDV84_05570 alpha/beta fold hydrolase K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114]
D RDV84_16715 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D RDV84_22235 methylmalonyl-CoA mutase family protein K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13]
D RDV84_05565 fatty acid CoA ligase family protein K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D RDV84_02260 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D RDV84_11350 rtcA; RNA 3'-terminal phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4]
D RDV84_16750 rnfB; Rnf electron transport complex subunit RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
C 99981 Carbohydrate metabolism
D RDV84_19365 gluconate 2-dehydrogenase subunit 3 family protein K26060 gtd2; glucoside 3-dehydrogenase (cytochrome c) hitch-hiker subunit
C 99982 Energy metabolism
D RDV84_25005 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein
D RDV84_16670 ferredoxin family protein K05524 fdxA; ferredoxin
D RDV84_11860 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit
D RDV84_00960 dodecin family protein K09165 K09165; dodecin
C 99983 Lipid metabolism
D RDV84_23500 acyl-CoA dehydrogenase family protein K09456 aidB; putative acyl-CoA dehydrogenase
D RDV84_19870 MbtH family protein K16227 gplH; glycopeptidolipid biosynthesis protein
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D RDV84_10310 VOC family protein K08234 yaeR; glyoxylase I family protein
D RDV84_24440 VOC family protein K08234 yaeR; glyoxylase I family protein
D RDV84_00910 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D RDV84_22875 GNAT family protein K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D RDV84_17810 LapA family protein K08992 lapA; lipopolysaccharide assembly protein A
D RDV84_17815 lapB; lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B
D RDV84_03520 lysylphosphatidylglycerol synthase domain-containing protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D RDV84_08220 heme biosynthesis HemY N-terminal domain-containing protein K02498 hemY; HemY protein
D RDV84_05550 ubiB; ubiquinone biosynthesis regulatory protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D RDV84_05555 SCP2 sterol-binding domain-containing protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D RDV84_05425 accessory factor UbiK family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
D RDV84_24885 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D RDV84_11940 lanKC; class III lanthionine synthetase LanKC K24914 ramC; probable SapB synthase
C 99999 Others
D RDV84_17640 DoxX family protein K15977 K15977; putative oxidoreductase
D RDV84_25090 DoxX family protein K15977 K15977; putative oxidoreductase
D RDV84_10400 alpha/beta fold hydrolase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RDV84_09740 cold-shock protein K03704 cspA; cold shock protein
D RDV84_17165 cold-shock protein K03704 cspA; cold shock protein
D RDV84_23505 cold-shock protein K03704 cspA; cold shock protein
D RDV84_07775 P-II family nitrogen regulator K04752 glnK; nitrogen regulatory protein P-II 2
C 99974 Translation
D RDV84_15320 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein
D RDV84_19975 ligase-associated DNA damage response exonuclease K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D RDV84_20730 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D RDV84_15630 tig; trigger factor K03545 tig; trigger factor
D RDV84_17530 msrQ; protein-methionine-sulfoxide reductase heme-binding subunit MsrQ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D RDV84_17620 ferric reductase-like transmembrane domain-containing protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D RDV84_21085 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D RDV84_05430 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D RDV84_11020 OsmC family protein K07397 yhfA; putative redox protein
D RDV84_17720 NfuA family Fe-S biogenesis protein K07400 nfuA; Fe/S biogenesis protein NfuA
D RDV84_10345 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D RDV84_15260 MGMT family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D RDV84_05360 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D RDV84_07325 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D RDV84_23865 AAA family ATPase K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D RDV84_12260 YraN family protein K07460 yraN; putative endonuclease
D RDV84_18745 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease
D RDV84_25140 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease
D RDV84_04880 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein
D RDV84_20655 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D RDV84_01850 transposase K07491 rayT; REP-associated tyrosine transposase
C 99979 Viral proteins
C 99998 Others
D RDV84_23715 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RDV84_09675 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D RDV84_18935 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D RDV84_16465 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RDV84_17030 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RDV84_22510 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RDV84_22515 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RDV84_17750 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RDV84_19550 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RDV84_09350 CitMHS family transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D RDV84_01235 MFS transporter K03301 TC.AAA; ATP:ADP antiporter, AAA family
D RDV84_01250 MFS transporter K03301 TC.AAA; ATP:ADP antiporter, AAA family
D RDV84_11525 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D RDV84_14585 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D RDV84_16980 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D RDV84_15250 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D RDV84_05580 sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D RDV84_07800 sodium/sugar symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D RDV84_02770 alanine/glycine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D RDV84_14245 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D RDV84_01370 nucleoside transporter C-terminal domain-containing protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D RDV84_05240 peptidoglycan DD-metalloendopeptidase family protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
D RDV84_25070 TfoX/Sxy family protein K07343 tfoX; DNA transformation protein and related proteins
D RDV84_06375 fimbria/pilus periplasmic chaperone K15540 ecpD; chaperone protein EcpD
C 99995 Signaling proteins
D RDV84_02845 ampE; regulatory signaling modulator protein AmpE K03807 ampE; AmpE protein
D RDV84_14165 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D RDV84_14675 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D RDV84_16640 PhoH family protein K07175 phoH2; PhoH-like ATPase
D RDV84_12815 ATPase domain-containing protein K08482 kaiC; circadian clock protein KaiC
D RDV84_03155 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D RDV84_20670 lolA; outer membrane lipoprotein chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein
D RDV84_13860 lolB; lipoprotein insertase outer membrane protein LolB K02494 lolB; outer membrane lipoprotein LolB
D RDV84_07335 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D RDV84_17175 glycine zipper 2TM domain-containing protein K06077 slyB; outer membrane lipoprotein SlyB
D RDV84_24695 peptidoglycan DD-metalloendopeptidase family protein K06194 nlpD; lipoprotein NlpD
D RDV84_10580 GH25 family lysozyme K07273 acm; lysozyme
D RDV84_01800 OmpW family outer membrane protein K07275 ompW; outer membrane protein
D RDV84_03130 OmpW family outer membrane protein K07275 ompW; outer membrane protein
D RDV84_23695 Slp family lipoprotein K07285 slp; outer membrane lipoprotein
D RDV84_01120 AsmA family protein K07290 yhjG; AsmA family protein
D RDV84_01305 NfeD family protein K07340 ybbJ; inner membrane protein
D RDV84_14705 HlyD family efflux transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein
D RDV84_07435 hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein
D RDV84_07440 HlyD family efflux transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D RDV84_11955 HlyD family efflux transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D RDV84_13325 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D RDV84_19545 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D RDV84_02995 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D RDV84_24090 creD; cell envelope integrity protein CreD K06143 creD; inner membrane protein
D RDV84_18270 ccmE; cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D RDV84_18250 tetratricopeptide repeat protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D RDV84_18255 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D RDV84_17885 DUF4115 domain-containing protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D RDV84_16050 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein
D RDV84_02885 (2Fe-2S)-binding protein K02192 bfd; bacterioferritin-associated ferredoxin
D RDV84_07470 glucan biosynthesis protein D K03670 mdoG; periplasmic glucans biosynthesis protein
D RDV84_24065 glucan biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein
D RDV84_08095 TerC family protein K05794 terC; tellurite resistance protein TerC
D RDV84_02655 cutA; divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D RDV84_20880 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D RDV84_13415 apaG; Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein
D RDV84_22830 NAD(P)/FAD-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport
D RDV84_19210 copper resistance protein B K07233 pcoB; copper resistance protein B
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RDV84_25380 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D RDV84_18410 peptidoglycan-binding protein K03791 K03791; putative chitinase
D RDV84_10545 GNAT family N-acetyltransferase K02348 elaA; ElaA protein
D RDV84_20500 BON domain-containing protein K04065 osmY; hyperosmotically inducible periplasmic protein
D RDV84_14150 pqqB; pyrroloquinoline quinone biosynthesis protein PqqB K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B
D RDV84_14140 pqqD; pyrroloquinoline quinone biosynthesis peptide chaperone PqqD K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D
D RDV84_06100 DEAD/DEAH box helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D RDV84_17845 tRNA-binding protein K06878 K06878; tRNA-binding protein
D RDV84_20335 group III truncated hemoglobin K06886 glbN; hemoglobin
D RDV84_08845 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D RDV84_10460 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D RDV84_00450 DUF3734 domain-containing protein K07001 K07001; NTE family protein
D RDV84_17505 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D RDV84_11305 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D RDV84_02855 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D RDV84_00470 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D RDV84_00490 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D RDV84_12255 metal-dependent hydrolase K07038 K07038; inner membrane protein
D RDV84_01405 metal-dependent hydrolase K07038 K07038; inner membrane protein
D RDV84_05090 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D RDV84_13770 YihY family inner membrane protein K07058 K07058; membrane protein
D RDV84_22910 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D RDV84_21700 sulfurtransferase K07146 K07146; UPF0176 protein
D RDV84_20750 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein
D RDV84_08000 VOC family protein K04750 phnB; PhnB protein
D RDV84_02290 VOC family protein K04750 phnB; PhnB protein
D RDV84_24150 heme-binding protein K11477 glcG; glc operon protein GlcG
D RDV84_04510 arsH; arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D RDV84_14370 arsH; arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D RDV84_13355 LemA family protein K03744 lemA; LemA protein
D RDV84_18865 SlyX family protein K03745 slyX; SlyX protein
D RDV84_04885 DUF494 family protein K03747 smg; Smg protein
D RDV84_09045 lytic polysaccharide monooxygenase K03933 cpbD; chitin-binding protein
D RDV84_09050 lytic polysaccharide monooxygenase K03933 cpbD; chitin-binding protein
D RDV84_04830 PH domain-containing protein K08981 K08981; putative membrane protein
D RDV84_18235 DUF2214 family protein K08983 K08983; putative membrane protein
D RDV84_00675 DUF2238 domain-containing protein K08984 yjdF; putative membrane protein
D RDV84_01225 DUF1304 domain-containing protein K08987 K08987; putative membrane protein
D RDV84_06480 DUF350 domain-containing protein K08989 K08989; putative membrane protein
D RDV84_04650 DUF4142 domain-containing protein K08995 K08995; putative membrane protein
D RDV84_06655 YchJ family metal-binding protein K09858 K09858; SEC-C motif domain protein
D RDV84_00990 cupin domain-containing protein K11312 K11312; cupin 2 domain-containing protein
D RDV84_10540 DUF417 family protein K21741 rclC; reactive chlorine resistance protein C
C 99997 Function unknown
D RDV84_08700 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D RDV84_24590 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D RDV84_07670 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D RDV84_07665 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D RDV84_13360 TPM domain-containing protein K06872 K06872; uncharacterized protein
D RDV84_13365 TPM domain-containing protein K06872 K06872; uncharacterized protein
D RDV84_13370 TPM domain-containing protein K06872 K06872; uncharacterized protein
D RDV84_07225 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein
D RDV84_17930 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D RDV84_24095 CocE/NonD family hydrolase K06889 K06889; uncharacterized protein
D RDV84_16105 DUF1289 domain-containing protein K06938 K06938; uncharacterized protein
D RDV84_06665 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D RDV84_08415 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D RDV84_24055 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D RDV84_03400 GTPase K06945 K06945; uncharacterized protein
D RDV84_17005 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D RDV84_06050 GNAT family N-acetyltransferase K06977 K06977; uncharacterized protein
D RDV84_24335 GNAT family N-acetyltransferase K06977 K06977; uncharacterized protein
D RDV84_04315 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein
D RDV84_22760 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein
D RDV84_22120 SAM-dependent methyltransferase K06983 K06983; uncharacterized protein
D RDV84_07115 C39 family peptidase K06992 K06992; uncharacterized protein
D RDV84_07045 cupin domain-containing protein K06995 K06995; uncharacterized protein
D RDV84_25225 VOC family protein K06996 K06996; uncharacterized protein
D RDV84_03135 VOC family protein K06996 K06996; uncharacterized protein
D RDV84_06515 ExeM/NucH family extracellular endonuclease K07004 K07004; uncharacterized protein
D RDV84_11505 lamin tail domain-containing protein K07004 K07004; uncharacterized protein
D RDV84_11510 lamin tail domain-containing protein K07004 K07004; uncharacterized protein
D RDV84_11515 lamin tail domain-containing protein K07004 K07004; uncharacterized protein
D RDV84_21430 DUF3413 domain-containing protein K07014 K07014; uncharacterized protein
D RDV84_20215 alpha/beta hydrolase-fold protein K07017 K07017; uncharacterized protein
D RDV84_06520 alpha/beta fold hydrolase K07018 K07018; uncharacterized protein
D RDV84_07715 alpha/beta fold hydrolase K07019 K07019; uncharacterized protein
D RDV84_09630 hypothetical protein K07032 K07032; uncharacterized protein
D RDV84_06660 UPF0149 family protein K07039 K07039; uncharacterized protein
D RDV84_20165 amidohydrolase family protein K07045 K07045; uncharacterized protein
D RDV84_21155 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein
D RDV84_06070 nucleotidyltransferase domain-containing protein K07074 K07074; uncharacterized protein
D RDV84_04995 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RDV84_16445 TSUP family transporter K07090 K07090; uncharacterized protein
D RDV84_01245 metallophosphoesterase K07098 K07098; uncharacterized protein
D RDV84_25040 NAD(P)-dependent oxidoreductase K07118 K07118; uncharacterized protein
D RDV84_12265 penicillin-binding protein activator K07121 K07121; uncharacterized protein
D RDV84_03415 roadblock/LC7 domain-containing protein K07131 K07131; uncharacterized protein
D RDV84_20110 NAD(P)/FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein
D RDV84_10270 DUF418 domain-containing protein K07148 K07148; uncharacterized protein
D RDV84_16875 DUF418 domain-containing protein K07148 K07148; uncharacterized protein
D RDV84_24855 DUF418 domain-containing protein K07148 K07148; uncharacterized protein
D RDV84_02255 LON peptidase substrate-binding domain-containing protein K07157 K07157; uncharacterized protein
D RDV84_22935 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D RDV84_02190 DUF192 domain-containing protein K09005 K09005; uncharacterized protein
D RDV84_05085 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein
D RDV84_10760 DUF493 family protein K09158 K09158; uncharacterized protein
D RDV84_16740 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D RDV84_21935 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D RDV84_04825 PH domain-containing protein K09167 K09167; uncharacterized protein
D RDV84_22005 DUF333 domain-containing protein K09712 K09712; uncharacterized protein
D RDV84_16910 YaiI/YqxD family protein K09768 K09768; uncharacterized protein
D RDV84_18485 YciI family protein K09780 K09780; uncharacterized protein
D RDV84_10480 YbaN family protein K09790 K09790; uncharacterized protein
D RDV84_19655 YbaN family protein K09790 K09790; uncharacterized protein
D RDV84_20205 YbaN family protein K09790 K09790; uncharacterized protein
D RDV84_17160 DUF456 domain-containing protein K09793 K09793; uncharacterized protein
D RDV84_11775 YdcH family protein K09794 K09794; uncharacterized protein
D RDV84_21075 RnfH family protein K09801 K09801; uncharacterized protein
D RDV84_06970 SIMPL domain-containing protein K09807 K09807; uncharacterized protein
D RDV84_09695 SIMPL domain-containing protein K09807 K09807; uncharacterized protein
D RDV84_15695 SIMPL domain-containing protein K09807 K09807; uncharacterized protein
D RDV84_02080 UPF0149 family protein K09895 K09895; uncharacterized protein
D RDV84_08695 YcgL domain-containing protein K09902 K09902; uncharacterized protein
D RDV84_09580 DUF2058 domain-containing protein K09912 K09912; uncharacterized protein
D RDV84_12575 YceH family protein K09915 K09915; uncharacterized protein
D RDV84_20695 GNAT family N-acetyltransferase K09919 K09919; uncharacterized protein
D RDV84_18030 DUF1249 domain-containing protein K09920 K09920; uncharacterized protein
D RDV84_10495 DUF484 family protein K09921 K09921; uncharacterized protein
D RDV84_13310 DMT family protein K09922 K09922; uncharacterized protein
D RDV84_24815 crosslink repair DNA glycosylase YcaQ family protein K09927 K09927; uncharacterized protein
D RDV84_16030 putative DNA-binding domain-containing protein K09929 K09929; uncharacterized protein
D RDV84_17625 putative DNA-binding domain-containing protein K09929 K09929; uncharacterized protein
D RDV84_16035 DUF692 domain-containing protein K09930 K09930; uncharacterized protein
D RDV84_17630 DUF692 domain-containing protein K09930 K09930; uncharacterized protein
D RDV84_24615 DUF2065 family protein K09937 K09937; uncharacterized protein
D RDV84_00660 DUF2066 domain-containing protein K09938 K09938; uncharacterized protein
D RDV84_00535 PepSY-associated TM helix domain-containing protein K09939 K09939; uncharacterized protein
D RDV84_15745 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein
D RDV84_03160 DUF1415 domain-containing protein K09941 K09941; uncharacterized protein
D RDV84_01390 YegP family protein K09946 K09946; uncharacterized protein
D RDV84_17940 DUF1244 domain-containing protein K09948 K09948; uncharacterized protein
D RDV84_05610 glycoside hydrolase family 127 protein K09955 K09955; uncharacterized protein
D RDV84_18450 nuclear transport factor 2 family protein K09958 K09958; uncharacterized protein
D RDV84_21270 DUF2239 family protein K09965 K09965; uncharacterized protein
D RDV84_16745 TraB/GumN family protein K09973 K09973; uncharacterized protein
D RDV84_13405 DUF1287 domain-containing protein K09974 K09974; uncharacterized protein
D RDV84_00560 HutD family protein K09975 K09975; uncharacterized protein
D RDV84_05645 DUF2170 family protein K09980 K09980; uncharacterized protein
D RDV84_06505 DUF2170 family protein K09980 K09980; uncharacterized protein
D RDV84_15060 YjhX family toxin K09982 K09982; uncharacterized protein
D RDV84_17980 DUF1993 domain-containing protein K09983 K09983; uncharacterized protein
D RDV84_21750 DUF1993 domain-containing protein K09983 K09983; uncharacterized protein
D RDV84_08265 2OG-Fe(II) oxygenase K09990 K09990; uncharacterized protein
D RDV84_06105 ribonuclease H-like domain-containing protein K07502 yprB; uncharacterized protein
D RDV84_15245 DUF47 family protein K07220 K07220; uncharacterized protein
D RDV84_02560 mitochondrial fission ELM1 family protein K07276 K07276; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 26, 2024