+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mycobacteroides abscessus ATCC 19977

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MAB_3012 Probable methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MAB_2332c Putative methylated-DNA:protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MAB_3283c Uracil-DNA glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MAB_2352 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MAB_0558c Probable adenine glycosylase (MutY) K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MAB_0418 Probable endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E MAB_0860c Probable DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D MAB_1838 Endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D MAB_1308 Probable mutator protein MutT2/NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAB_4221c Possible mutator protein MutT3 (MutT/nudix family) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAB_3003c Probable deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MAB_3012 Probable methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MAB_2332c Putative methylated-DNA:protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MAB_3283c Uracil-DNA glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MAB_2333c Putative 3-methyladenine DNA glycosylase AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MAB_2352 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MAB_0558c Probable adenine glycosylase (MutY) K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MAB_1349 Probable DNA-3-methyladenine glycosylase I TagA K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MAB_3255c Formamidopyrimidine-DNA glycosylase (MutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MAB_1038 Putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MAB_4728c Putative DNA glycosylase Nei K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E MAB_1575 Probable formamidopyrimidine-DNA glycolase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E MAB_0418 Probable endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MAB_4189 Probable exodeoxyribonuclease III protein XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MAB_3684c Putative exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E MAB_3345c DNA ligase (polydeoxyribonucleotide synthase NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MAB_2615c DNA polymerase (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MAB_2315 UvrABC system protein A (UvrA protein) excinuclease K03701 uvrA; excinuclease ABC subunit A E MAB_2308 UvrABC system protein B (UvrB protein) excinuclease K03702 uvrB; excinuclease ABC subunit B E MAB_2784c UvrABC system protein C UvrC K03703 uvrC; excinuclease ABC subunit C E MAB_1054 Putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAB_3511c Probable DNA helicase II homolog UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAB_3515c Probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAB_2615c DNA polymerase (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] E MAB_3345c DNA ligase (polydeoxyribonucleotide synthase NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MAB_3869c DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MAB_3868c DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MAB_3770c DNA-directed RNA polymerase alpha chain RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MAB_2822c DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MAB_1157 Probable transcription-repair coupling factor (TrcF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E MAB_1255c Probable exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MAB_1254c Probable exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MAB_2696c DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MAB_0002 dnaN; DNA polymerase III, beta subunit (DnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MAB_1633 Putative DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MAB_0491 Probable DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MAB_1971c Probable DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MAB_0329 DNA polymerase III, epsilon subunit (DnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MAB_0309 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MAB_3345c DNA ligase (polydeoxyribonucleotide synthase NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MAB_1054 Putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAB_3511c Probable DNA helicase II homolog UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAB_3515c Probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAB_1559 Probable single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E MAB_4898c Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MAB_0399c Exodeoxyribonuclease V, beta subunit (RecB) K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E MAB_0400c Exodeoxyribonuclease V, gamma subunit (RecC) K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E MAB_0398c Exodeoxyribonuclease V, alpha subunit (RecD) K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E MAB_3060c RecA protein K03553 recA; recombination protein RecA E MAB_2883c Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MAB_2882c Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MAB_2884c Probable crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E MAB_2813c Putative primosomal protein N' (ATP-dependent helicase priA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E MAB_3060c RecA protein K03553 recA; recombination protein RecA E MAB_0564c Probable DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E MAB_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E MAB_3278c ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MAB_1675 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E MAB_0320 Recombination protein RecR K06187 recR; recombination protein RecR E MAB_2361 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E MAB_2883c Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MAB_2882c Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MAB_2884c Probable crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E MAB_1534 Conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E MAB_1032c Conserved hypothetical protein (Ku70/Ku80 beta-barrel domain protein?) K10979 ku; DNA end-binding protein Ku E MAB_1033 Putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MAB_0019 DNA gyrase (subunit A) GyrA (DNA topoisomerase) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MAB_0006 DNA gyrase (subunit B) GyrB (DNA topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MAB_0489 DNA topoisomerase I (Omega-protein) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MAB_3292c DNA-binding protein HU homolog (Histone-like) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MAB_1675 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F MAB_0320 Recombination protein RecR K06187 recR; recombination protein RecR F MAB_3345c DNA ligase (polydeoxyribonucleotide synthase NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F MAB_2315 UvrABC system protein A (UvrA protein) excinuclease K03701 uvrA; excinuclease ABC subunit A F MAB_2308 UvrABC system protein B (UvrB protein) excinuclease K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MAB_2702c DNA polymerase IV family K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MAB_0977c Putative DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D MAB_3060c RecA protein K03553 recA; recombination protein RecA D MAB_3038 Probable repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D MAB_2361 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D MAB_3712c Conserved hypothetical protein K14161 imuB; protein ImuB D MAB_3703c Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D MAB_1559 Probable single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D MAB_4898c Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MAB_3059c Probable regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D MAB_1471c Probable ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MAB_3651 Probable ATP-dependent helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MAB_1308 Probable mutator protein MutT2/NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAB_4221c Possible mutator protein MutT3 (MutT/nudix family) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAB_3291 Possible hydrolase MutT/NUDIX K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D MAB_2365 Hypothetical MutT/nudix family protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D MAB_3003c Probable deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MAB_3413c Ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MAB_4007c Ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D MAB_3404c Probable ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D MAB_3129c Conserved hypothetical protein (putative phosphoesterase) K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024