+E Transcription factors KO
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Transcription Factors - Methanosarcina acetivorans
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
D MA_4645 conserved hypothetical protein K07466 RFA1; replication factor A1
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
D MA_4331 tbp-1; TATA-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D MA_0179 tbp-2; TATA-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D MA_0278 tbp-3; TATA-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D MA_0516 conserved hypothetical protein K13652 K13652; AraC family transcriptional regulator
D MA_0499 conserved hypothetical protein K13652 K13652; AraC family transcriptional regulator
C LysR family
C DeoR family
C LacI family
C GntR family
C TetR/AcrR family
D MA_1487 tetR; transcription regulation protein K09017 rutR; TetR/AcrR family transcriptional regulator
D MA_1771 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D MA_0178 transcriptional regulator, TetR family K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
C Lrp/AsnC family
C LuxR family
C MarR family
D MA_2055 MarR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
C Fur family
D MA_1005 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MA_0971 fur; ferric uptake regulation protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
C ArsR family
D MA_3940 cadC; transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D MA_4076 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D MA_4344 smtB; efflux system transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D MA_4576 Hth5 family protein K07721 K07721; ArsR family transcriptional regulator
D MA_2921 transcriptional regulator, ArsR family K07721 K07721; ArsR family transcriptional regulator
C XRE family
C PadR family
C Other families
D MA_4338 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D MA_0022 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D MA_3468 conserved hypothetical protein K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D MA_0676 bpl; biotin operon repressor/biotin-pyruvate carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D MA_4404 conserved hypothetical protein K09720 nrpRI; HTH-type transcriptional regulator, global nitrogen regulator NrpRI
D MA_0359 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D MA_0287 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D MA_3151 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D MA_1835 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D MA_4622 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D MA_2207 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D MA_2212 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D MA_2520 pyrE; orotate phosphoribosyltransferase K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism
D MA_0919 orotate phosphoribosyltransferase K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism
D MA_0283 modA; molybdenum-binding protein K02019 modE; molybdate transport system regulatory protein
D MA_3524 conserved hypothetical protein K07728 K07728; putative transcriptional regulator
D MA_3984 helix-turn-helix family protein K07729 K07729; putative transcriptional regulator
D MA_4668 transcriptional regulator, Hth-3 family K07729 K07729; putative transcriptional regulator
D MA_3015 conserved hypothetical protein K07730 K07730; putative transcriptional regulator
D MA_4040 conserved hypothetical protein K07731 K07731; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D MA_4075 transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D MA_1763 transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D MA_1395 transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D MA_2814 transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
B Other transcription factors
C BglG family
C Others
D MA_4346 hypothetical protein (multi-domain) K03973 pspC; phage shock protein C
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0