+F Repair protein KO
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DNA Repair and Recombination Proteins - Magnetospira sp. QH-2
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MGMAQ_3809 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E MGMAQ_0700 mutY; adenine glycosylase mutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E MGMAQ_0243 nth; DNA-(apurinic or apyrimidinic site) lyase (Endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D MGMAQ_2802 putative dGTP pyrophosphohydrolase, mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGMAQ_0157 putative Hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGMAQ_2541 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGMAQ_1872 Hydrolase, NUDIX family, NudH subfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGMAQ_3933 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MGMAQ_3809 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D MGMAQ_3878 putative Transcriptional regulator, AraC family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D MGMAQ_1409 ada; Fused DNA-binding transcriptional dual regulator ; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E MGMAQ_1658 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E MGMAQ_3503 putative Uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E MGMAQ_0700 mutY; adenine glycosylase mutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E MGMAQ_1786 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E MGMAQ_3938 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E MGMAQ_0243 nth; DNA-(apurinic or apyrimidinic site) lyase (Endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E MGMAQ_3617 putative Endonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E MGMAQ_1712 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E MGMAQ_1763 Putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E MGMAQ_0841 ligA; DNA ligase [NAD+] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E MGMAQ_3526 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E MGMAQ_1696 uvrA; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)(Excinuclease ATPase subunit) K03701 uvrA; excinuclease ABC subunit A
E MGMAQ_1452 uvrB; Excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
E MGMAQ_3023 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E MGMAQ_3142 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MGMAQ_3526 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E MGMAQ_0841 ligA; DNA ligase [NAD+] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F MGMAQ_2764 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F MGMAQ_2763 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F MGMAQ_2731 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F MGMAQ_1661 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F MGMAQ_1878 mfd; transcription repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E MGMAQ_3832 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E MGMAQ_0213 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E MGMAQ_3049 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E MGMAQ_2262 xseB; Exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E MGMAQ_2097 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E MGMAQ_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E MGMAQ_0882 putative DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E MGMAQ_3800 putative DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E MGMAQ_1888 Putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E MGMAQ_0721 Putative Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E MGMAQ_3820 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E MGMAQ_3590 dnaX; DNA polymerase III tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E MGMAQ_0841 ligA; DNA ligase [NAD+] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E MGMAQ_3142 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MGMAQ_p0035 Putative single-stranded DNA-binding protein 1 K03111 ssb; single-strand DNA-binding protein
E MGMAQ_1689 ssb; Single-stranded DNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
E MGMAQ_0824 Conserved protein of unknown function K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E MGMAQ_2216 recA; Recombinase A (recA) K03553 recA; recombination protein RecA
E MGMAQ_1393 ruvA; Component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
E MGMAQ_1394 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E MGMAQ_1392 ruvC; Component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E MGMAQ_0387 priA; Primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E MGMAQ_2216 recA; Recombinase A (recA) K03553 recA; recombination protein RecA
E MGMAQ_2179 radA; DNA repair protein (DNA repair protein) K04485 radA; DNA repair protein RadA/Sms
E MGMAQ_0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E MGMAQ_1876 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E MGMAQ_1763 Putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E MGMAQ_1672 Putative DNA repair protein RecO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
E MGMAQ_0230 recR; Recombination protein recR K06187 recR; recombination protein RecR
E MGMAQ_0842 recN; DNA repair protein RecN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N)
E MGMAQ_1393 ruvA; Component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
E MGMAQ_1394 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E MGMAQ_1392 ruvC; Component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E MGMAQ_0627 putative UvrD/REP helicase (addA) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E MGMAQ_0626 putative helicase (addB) K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E MGMAQ_2145 Conserved protein of unknown function. Might be involved in the DNA repair. CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F MGMAQ_1681 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F MGMAQ_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F MGMAQ_3259 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F MGMAQ_1986 hupB; DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F MGMAQ_1763 Putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F MGMAQ_1672 Putative DNA repair protein RecO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
F MGMAQ_0230 recR; Recombination protein recR K06187 recR; recombination protein RecR
F MGMAQ_0841 ligA; DNA ligase [NAD+] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F MGMAQ_1920 ihfA; Integration host factor alpha-subunit (IHF-alpha) K04764 ihfA; integration host factor subunit alpha
F MGMAQ_0638 ihfB; Integration host factor beta-subunit (IHF-beta) K05788 ihfB; integration host factor subunit beta
E Supressor
F MGMAQ_2414 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F MGMAQ_1696 uvrA; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)(Excinuclease ATPase subunit) K03701 uvrA; excinuclease ABC subunit A
F MGMAQ_1452 uvrB; Excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D MGMAQ_2216 recA; Recombinase A (recA) K03553 recA; recombination protein RecA
D MGMAQ_2074 lexA; SOS response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D MGMAQ_0842 recN; DNA repair protein RecN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N)
D MGMAQ_1994 Conserved protein of unknown function K14160 imuA; protein ImuA
D MGMAQ_1995 imuB; Protein ImuB K14161 imuB; protein ImuB
D MGMAQ_2409 dnaE; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D MGMAQ_p0035 Putative single-stranded DNA-binding protein 1 K03111 ssb; single-strand DNA-binding protein
D MGMAQ_1689 ssb; Single-stranded DNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D MGMAQ_0380 recX; Regulatory protein recX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D MGMAQ_0374 putative Rad3-related DNA helicases K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D MGMAQ_2340 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D MGMAQ_2802 putative dGTP pyrophosphohydrolase, mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGMAQ_0157 putative Hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGMAQ_2541 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGMAQ_1872 Hydrolase, NUDIX family, NudH subfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGMAQ_3933 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MGMAQ_2901 putative ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D MGMAQ_1795 nrd; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024