+F Repair protein KO #

  DNA Repair and Recombination Proteins - Magnetospira sp. QH-2

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MGMAQ_3809 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MGMAQ_0700 mutY; adenine glycosylase mutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MGMAQ_0243 nth; DNA-(apurinic or apyrimidinic site) lyase (Endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MGMAQ_2802 putative dGTP pyrophosphohydrolase, mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MGMAQ_0157 putative Hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MGMAQ_2541 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MGMAQ_1872 Hydrolase, NUDIX family, NudH subfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MGMAQ_3933 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MGMAQ_3809 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MGMAQ_3878 putative Transcriptional regulator, AraC family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D MGMAQ_1409 ada; Fused DNA-binding transcriptional dual regulator ; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MGMAQ_1658 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MGMAQ_3503 putative Uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MGMAQ_0700 mutY; adenine glycosylase mutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MGMAQ_1786 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MGMAQ_3938 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MGMAQ_0243 nth; DNA-(apurinic or apyrimidinic site) lyase (Endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MGMAQ_3617 putative Endonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MGMAQ_1712 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E MGMAQ_1763 Putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E MGMAQ_0841 ligA; DNA ligase [NAD+] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MGMAQ_3526 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MGMAQ_1696 uvrA; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)(Excinuclease ATPase subunit) K03701 uvrA; excinuclease ABC subunit A E MGMAQ_1452 uvrB; Excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B E MGMAQ_3023 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E MGMAQ_3142 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MGMAQ_3526 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E MGMAQ_0841 ligA; DNA ligase [NAD+] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MGMAQ_2764 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MGMAQ_2763 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MGMAQ_2731 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MGMAQ_1661 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MGMAQ_1878 mfd; transcription repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MGMAQ_3832 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E MGMAQ_0213 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E MGMAQ_3049 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MGMAQ_2262 xseB; Exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MGMAQ_2097 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MGMAQ_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MGMAQ_0882 putative DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E MGMAQ_3800 putative DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MGMAQ_1888 Putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MGMAQ_0721 Putative Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MGMAQ_3820 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MGMAQ_3590 dnaX; DNA polymerase III tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MGMAQ_0841 ligA; DNA ligase [NAD+] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MGMAQ_3142 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MGMAQ_p0035 Putative single-stranded DNA-binding protein 1 K03111 ssb; single-strand DNA-binding protein E MGMAQ_1689 ssb; Single-stranded DNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein E MGMAQ_0824 Conserved protein of unknown function K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MGMAQ_2216 recA; Recombinase A (recA) K03553 recA; recombination protein RecA E MGMAQ_1393 ruvA; Component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA E MGMAQ_1394 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MGMAQ_1392 ruvC; Component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E MGMAQ_0387 priA; Primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E MGMAQ_2216 recA; Recombinase A (recA) K03553 recA; recombination protein RecA E MGMAQ_2179 radA; DNA repair protein (DNA repair protein) K04485 radA; DNA repair protein RadA/Sms E MGMAQ_0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E MGMAQ_1876 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MGMAQ_1763 Putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MGMAQ_1672 Putative DNA repair protein RecO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E MGMAQ_0230 recR; Recombination protein recR K06187 recR; recombination protein RecR E MGMAQ_0842 recN; DNA repair protein RecN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) E MGMAQ_1393 ruvA; Component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA E MGMAQ_1394 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MGMAQ_1392 ruvC; Component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E MGMAQ_0627 putative UvrD/REP helicase (addA) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E MGMAQ_0626 putative helicase (addB) K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E MGMAQ_2145 Conserved protein of unknown function. Might be involved in the DNA repair. CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MGMAQ_1681 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MGMAQ_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MGMAQ_3259 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MGMAQ_1986 hupB; DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MGMAQ_1763 Putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MGMAQ_1672 Putative DNA repair protein RecO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F MGMAQ_0230 recR; Recombination protein recR K06187 recR; recombination protein RecR F MGMAQ_0841 ligA; DNA ligase [NAD+] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F MGMAQ_1920 ihfA; Integration host factor alpha-subunit (IHF-alpha) K04764 ihfA; integration host factor subunit alpha F MGMAQ_0638 ihfB; Integration host factor beta-subunit (IHF-beta) K05788 ihfB; integration host factor subunit beta E Supressor F MGMAQ_2414 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MGMAQ_1696 uvrA; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)(Excinuclease ATPase subunit) K03701 uvrA; excinuclease ABC subunit A F MGMAQ_1452 uvrB; Excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D MGMAQ_2216 recA; Recombinase A (recA) K03553 recA; recombination protein RecA D MGMAQ_2074 lexA; SOS response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D MGMAQ_0842 recN; DNA repair protein RecN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) D MGMAQ_1994 Conserved protein of unknown function K14160 imuA; protein ImuA D MGMAQ_1995 imuB; Protein ImuB K14161 imuB; protein ImuB D MGMAQ_2409 dnaE; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D MGMAQ_p0035 Putative single-stranded DNA-binding protein 1 K03111 ssb; single-strand DNA-binding protein D MGMAQ_1689 ssb; Single-stranded DNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein D MGMAQ_0380 recX; Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D MGMAQ_0374 putative Rad3-related DNA helicases K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MGMAQ_2340 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MGMAQ_2802 putative dGTP pyrophosphohydrolase, mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MGMAQ_0157 putative Hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MGMAQ_2541 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MGMAQ_1872 Hydrolase, NUDIX family, NudH subfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MGMAQ_3933 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MGMAQ_2901 putative ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MGMAQ_1795 nrd; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024