+F Chromosome and associated proteins KO
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Chromosome and Associated Proteins - Pseudoduganella albidiflava
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AEukaryotic type
B Sister chromatid cohesion proteins
C Cohesin complex
C Adherin complex
C CTF18-RFC complex
C Fork protection complex
C Other sister chromatid cohesion factors
B Meiosis-specific proteins
C Cohesin complex and associated proteins
C Synaptonemal complex
C DSB formation-related proteins
C Others
B Nucleosome assembly factors
C Histones
C Histone chaperones
D Nucleoplasmins
D NAPs (Nucleosome assembly proteins)
D CAF-1
D FACT complex
D Other Histone chaperones and regulators
C HMG (high mobility group) proteins
B Histone modification proteins
C HATs (histone acetyltransferases)
C HAT complexes
D PCAF complex
D STAGA complex
D TFTC complex
D TIP60 complex
D HBO1 complex
D MOZ/MORF complex
D SAGA complex
D SLIK complex
D ADA-HAT complex
D HAT-A2 complex
D ATAC complex
D HATB complex
D NSL complex
D MSL complex
D NuA3 complex
D NuA4 complex
D SAS complex
C HDACs (histone deacetylases)
D Class I HDACs
D Class II HDACs
D SIRTs (sirtuins, class III HDACs)
D Class IV HDACs
C HDAC complexes
D Sin3A-HDAC complex
D BRAF-HDAC complex
D REST complex
D SHIP complex
D MiDAC complex
D SMART complex
D Other HDAC associated proteins
C HMTs (histone methyltransferases)
D HKMTs (histone lysine methyltransferases)
D PRMTs (protein arginine metyltransferases)
C HMT complexes
D COMPASS/SET1 complex
D COMPASS/SET1 complex (yeast)
D MLL-HCF complex
D MLL3/MLL4 complex
D Dot1-containing complex
C Histone demethylases
C Polycomb repressive complex (PRC) and associated proteins
D Canonical PRC1 (PRC1.2/1.4)
E PRC1.4 specific proteins
D Noncanonical PRC1 (PRC1.1)
D Noncanonical PRC1 (PRC1.3/1.5)
D Noncanonical PRC1 (PRC1.6)
D PRC2.1
D PRC2.2
D PR-DUB complex
D Other PRC associated proteins
C Sir proteins
C Other histone modification proteins
B Chromosome condensation proteins
C Condensin I
C Condensin II
C Other regulators of chromosome condensation
B Centromeric chromatin formation proteins
C Kinetochore proteins
D Centromere proteins
D CPC (chromosomal passenger complex)
D KMN network proteins
E MIS12 complex
E NDC80 complex
D Mis6 complex
D COMA complex
D NMS complex
E NDC80 complex
E MIND kinetochore complex
D MIS16-MIS18 complex
D DASH complex
D CBF3 complex
D Others
C SAC (spindle assembly checkpoint) factors
D Core SAC proteins
D Motor proteins
E RZZ complex
E Dynein complex
D Protein kinases
D Others
C Other centromeric chromatin formation proteins
D Shugoshin
D PP2A (protein phosphatase 2A)
B Heterochromatin formation proteins
C HP1 (heterochromatin protein 1)
C MBPs (metylated DNA binding proteins)
C Other heterochromatin formation proteins
D EYF70_22635 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Gene silencing
C RISC (RNA-induced silencing complex)
C piRNA pathway
C RNA interference (RNAi) pathway
D RITS (RNA-induced transcriptional silencing) complex
D RDRC (RNA-directed RNA polymerase complex)
D Other RNAi proteins
C microRNA pathway
D Microprocessor complex
E EYF70_07725 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RISC loading complex
D Other miRNA pathway proteins
C Transposable elements
B Centrosome formation proteins
C Centriole proteins
C Pericentriolar materials (PCM)
D Centriolar satellite
D Other PCM proteins
C Cyclins
C Kinases and associated factors
D Kinase anchoring protein
C Microtubules and associated factors
D gamma-tubulin ring complex
D Other tubulins
D Dynactin complex
D BRISC complex
D Microtubule-associated proteins
C Augmin complex
C Centrosome duplication proteins
D Centriole replication proteins
D Regulators of centriole replication
D Other centrosome duplication proteins
C Nde1-Su48 complex
C LINC complex
C 3M complex
C Other centriole associated proteins
C Spindle formation proteins
B Sister chromatid separation proteins
C Securin and associated proteins
C Separase
C APC/C complex
C Aurora kinases
D Regulators of Aurora kinases
C TACC proteins
C Polo kinases
C Early mitotic inhibitors
B Chromatin remodeling factors
C BAF complex
C PBAF complex
C GBAF(ncBAF) complex
C CHRAC complex
C RSF complex
C WICH complex
C B-WICH complex
C NORC complex
C BRF complex
C NuRD complex
C NuRF complex
C NuRF complex (fruit fly)
C CERF complex
C SRCAP complex
C INO80 complex
C INO80 complex (yeast)
C RSC complex
C SWI/SNF complex
C SWR1 complex
C ASTRA complex
C Other chromatin remodeling factors
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AProkaryotic type
B Nucleoid associated proteins
C HNS (histone-like nucleoid structuring protein)
D EYF70_02365 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D EYF70_15530 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
C HU (heat unstable protein)
D EYF70_23015 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D EYF70_12610 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
C IHF (integration host factor)
D EYF70_09820 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D EYF70_21355 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
C Other nucleoid associated proteins
D EYF70_21515 J domain-containing protein K05516 cbpA; curved DNA-binding protein
D EYF70_21510 MerR family transcriptional regulator K18997 cbpM; chaperone modulatory protein CbpM
D EYF70_30510 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D EYF70_19415 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D EYF70_24420 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D EYF70_06135 RNA chaperone Hfq K03666 hfq; host factor-I protein
D EYF70_15270 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D EYF70_17650 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D EYF70_28795 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D EYF70_27165 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D EYF70_15900 winged helix-turn-helix transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D EYF70_28725 winged helix-turn-helix transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
B Chromosome partitioning proteins
C MukBEF complex
C Condensin-like complex
D EYF70_10000 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D EYF70_07315 segregation/condensation protein A K05896 scpA; segregation and condensation protein A
D EYF70_22825 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
C Divisome proteins
D EYF70_23685 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D EYF70_05025 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D EYF70_23810 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein
D EYF70_23735 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D EYF70_18870 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D EYF70_23740 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D EYF70_23690 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D EYF70_23710 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D EYF70_23815 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein
D EYF70_23680 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D EYF70_03750 cell division protein ZapA K09888 zapA; cell division protein ZapA
D EYF70_03745 hypothetical protein K09892 zapB; cell division protein ZapB
D EYF70_23600 zapD; cell division protein ZapD K18778 zapD; cell division protein ZapD
D EYF70_05985 cell division protein ZapE K06916 zapE; cell division protein ZapE
D EYF70_02615 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EYF70_04710 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D EYF70_05695 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D EYF70_11130 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D EYF70_20280 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
C Inhibitors of FtsZ assembly
D EYF70_28135 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D EYF70_28140 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D EYF70_28145 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D EYF70_28405 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
C Other chromosome partitioning proteins
D EYF70_24705 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D EYF70_24700 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D EYF70_24695 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D EYF70_24685 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D EYF70_28655 ParA family protein K03496 parA; chromosome partitioning protein
D EYF70_28650 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EYF70_01950 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D EYF70_01970 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D EYF70_28665 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D EYF70_28660 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D EYF70_27255 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D EYF70_02675 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D EYF70_13500 site-specific integrase K04763 xerD; integrase/recombinase XerD
D EYF70_13565 hypothetical protein K04763 xerD; integrase/recombinase XerD
D EYF70_07340 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D EYF70_26645 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 16, 2024