+D GENES KO #

  KEGG Orthology (KO) - Methanofollis aquaemaris

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:maqe00010] D RJ40_06965 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RJ40_09165 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D RJ40_00530 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RJ40_00525 aldolase K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11] D RJ40_08670 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_08675 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_12555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RJ40_07945 type II glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D RJ40_09110 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RJ40_11125 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D RJ40_10850 cofactor-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RJ40_01320 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09580 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09390 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_10880 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07295 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07290 pyruvate synthase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10885 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10870 pyruvate ferredoxin oxidoreductase subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_07305 ferredoxin K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_10875 4Fe-4S dicluster domain-containing protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_11675 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04455 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04460 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_11670 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_08525 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_08560 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_01265 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_01270 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_03495 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_08345 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_11220 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] C 00020 Citrate cycle (TCA cycle) [PATH:maqe00020] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_11675 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04455 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04460 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_11670 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_11665 2-oxoacid:ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D RJ40_11680 4Fe-4S dicluster domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D RJ40_11655 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RJ40_11660 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RJ40_02300 FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RJ40_11690 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D RJ40_11685 fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D RJ40_07735 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11410 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_00675 acetyl-CoA carboxylase biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D RJ40_00670 oadA; oxaloacetate decarboxylase subunit alpha K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D RJ40_10880 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07295 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07290 pyruvate synthase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10885 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10870 pyruvate ferredoxin oxidoreductase subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_07305 ferredoxin K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_10875 4Fe-4S dicluster domain-containing protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00030 Pentose phosphate pathway [PATH:maqe00030] D RJ40_09165 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D RJ40_03480 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D RJ40_03655 bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43] D RJ40_01760 hxlB; 6-phospho-3-hexuloisomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D RJ40_09880 SIS domain-containing protein K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D RJ40_11130 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27] D RJ40_11220 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RJ40_06575 ribose 1,5-bisphosphate isomerase K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29] D RJ40_09015 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RJ40_05005 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D RJ40_08555 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D RJ40_08590 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D RJ40_00525 aldolase K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11] D RJ40_08670 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_08675 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_00530 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions D RJ40_00570 aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:maqe00051] D RJ40_10520 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D RJ40_11220 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RJ40_04230 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RJ40_00570 aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D RJ40_00530 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RJ40_00525 aldolase K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11] D RJ40_08670 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_08675 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_12555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:maqe00052] D RJ40_10860 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RJ40_10515 SDR family oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RJ40_11220 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RJ40_06965 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:maqe00500] D RJ40_04975 glycosyltransferase K13057 treT; trehalose synthase [EC:2.4.1.245] D RJ40_04980 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] D RJ40_11220 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RJ40_06965 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RJ40_09165 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:maqe00520] D RJ40_07030 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RJ40_07015 phosphopentomutase/phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D RJ40_07020 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D RJ40_10470 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D RJ40_10725 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D RJ40_07050 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D RJ40_10370 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D RJ40_10360 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D RJ40_10365 SDR family oxidoreductase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetyl-alpha-D-glucosaminouronate 4-epimerase [EC:5.1.3.7 5.1.3.45] D RJ40_06965 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RJ40_11220 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RJ40_10860 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RJ40_10515 SDR family oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RJ40_09165 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D RJ40_04230 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RJ40_10520 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] C 00620 Pyruvate metabolism [PATH:maqe00620] D RJ40_01265 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_01270 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_03495 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_08345 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_10880 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07295 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07290 pyruvate synthase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10885 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10870 pyruvate ferredoxin oxidoreductase subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_07305 ferredoxin K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_10875 4Fe-4S dicluster domain-containing protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_11675 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04455 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04460 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_11670 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_08525 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_08560 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_08305 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RJ40_11210 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RJ40_01840 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RJ40_02305 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RJ40_00675 acetyl-CoA carboxylase biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D RJ40_00670 oadA; oxaloacetate decarboxylase subunit alpha K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D RJ40_07735 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11410 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11690 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D RJ40_11685 fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D RJ40_09525 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D RJ40_09390 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_10205 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D RJ40_05985 aksA; homoaconitate hydratase K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:maqe00630] D RJ40_01265 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_01270 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_03495 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_08345 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_07735 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11410 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_03280 phosphoglycolate phosphatase K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18] D RJ40_06580 ribulose 1,5-bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D RJ40_04940 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_09470 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_07005 cyclase family protein K07130 kynB; arylformamidase [EC:3.5.1.9] C 00640 Propanoate metabolism [PATH:maqe00640] D RJ40_01265 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_01270 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_03495 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_08345 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_10880 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07295 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07290 pyruvate synthase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10885 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10870 pyruvate ferredoxin oxidoreductase subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_07305 ferredoxin K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_10875 4Fe-4S dicluster domain-containing protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_01445 acetyl ornithine aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RJ40_11660 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RJ40_11655 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism [PATH:maqe00650] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_02300 FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RJ40_01445 acetyl ornithine aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RJ40_02925 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RJ40_10880 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07295 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07290 pyruvate synthase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10885 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10870 pyruvate ferredoxin oxidoreductase subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_07305 ferredoxin K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_10875 4Fe-4S dicluster domain-containing protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_11675 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04455 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04460 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_11670 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_08455 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D RJ40_12690 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RJ40_12685 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RJ40_07775 budA; acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] C 00660 C5-Branched dibasic acid metabolism [PATH:maqe00660] D RJ40_12690 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RJ40_12685 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RJ40_07775 budA; acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] D RJ40_11660 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RJ40_11655 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RJ40_12695 2-isopropylmalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21] D RJ40_03040 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RJ40_03045 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RJ40_03050 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:maqe00562] D RJ40_12435 bifunctional fructose-bisphosphatase/inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RJ40_01290 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D RJ40_12555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:maqe00190] D RJ40_08535 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D RJ40_08570 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D RJ40_08540 4Fe-4S dicluster domain-containing protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D RJ40_08575 4Fe-4S dicluster domain-containing protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D RJ40_02300 FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RJ40_09095 ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D RJ40_09100 ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D RJ40_09085 ahaC; ATP synthase A1 subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D RJ40_09105 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D RJ40_09080 V-type ATP synthase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D RJ40_09090 V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D RJ40_09065 ATPase K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D RJ40_09070 V-type ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D RJ40_09075 ATPase K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D RJ40_01725 putative manganese-dependent inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:maqe00710] D RJ40_06580 ribulose 1,5-bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D RJ40_09110 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RJ40_07945 type II glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D RJ40_00530 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RJ40_03480 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D RJ40_03200 phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19] D RJ40_12555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RJ40_09525 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D RJ40_07735 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11410 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:maqe00720] D RJ40_10880 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07295 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07290 pyruvate synthase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10885 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10870 pyruvate ferredoxin oxidoreductase subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_07305 ferredoxin K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_10875 4Fe-4S dicluster domain-containing protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_09390 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RJ40_09525 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D RJ40_00675 acetyl-CoA carboxylase biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D RJ40_00670 oadA; oxaloacetate decarboxylase subunit alpha K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D RJ40_07735 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11410 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11690 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D RJ40_11685 fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D RJ40_02300 FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RJ40_08790 fumarate reductase subunit A K18209 tfrA; fumarate reductase (CoM/CoB) subunit A [EC:1.3.4.1] D RJ40_08785 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K18210 tfrB; fumarate reductase (CoM/CoB) subunit B [EC:1.3.4.1] D RJ40_11655 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RJ40_11660 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_11675 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04455 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RJ40_04460 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_11670 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RJ40_11665 2-oxoacid:ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D RJ40_11680 4Fe-4S dicluster domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D RJ40_09465 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RJ40_02225 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D RJ40_01265 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_01270 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_03495 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_08345 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:maqe00680] D RJ40_03450 formate dehydrogenase subunit alpha K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D RJ40_03445 formate dehydrogenase K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D RJ40_02225 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D RJ40_09470 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RJ40_01320 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09580 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09525 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D RJ40_07735 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11410 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_00525 aldolase K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11] D RJ40_08670 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_08675 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_00530 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RJ40_01760 hxlB; 6-phospho-3-hexuloisomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D RJ40_09880 SIS domain-containing protein K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D RJ40_03655 bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43] D RJ40_11130 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27] D RJ40_02845 formylmethanofuran dehydrogenase subunit A K00200 fwdA; formylmethanofuran dehydrogenase subunit A [EC:1.2.7.12] D RJ40_06065 formylmethanofuran dehydrogenase subunit A K00200 fwdA; formylmethanofuran dehydrogenase subunit A [EC:1.2.7.12] D RJ40_02840 formylmethanofuran dehydrogenase subunit B K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12] D RJ40_06060 formylmethanofuran dehydrogenase subunit B K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12] D RJ40_06070 formylmethanofuran dehydrogenase subunit C K00202 fwdC; formylmethanofuran dehydrogenase subunit C [EC:1.2.7.12] D RJ40_02850 formylmethanofuran dehydrogenase subunit C K00202 fwdC; formylmethanofuran dehydrogenase subunit C [EC:1.2.7.12] D RJ40_06055 molybdopterin dinucleotide-binding protein K00203 fwdD; formylmethanofuran dehydrogenase subunit D [EC:1.2.7.12] D RJ40_06030 4Fe-4S dicluster domain-containing protein K00205 fwdF; 4Fe-4S ferredoxin D RJ40_06025 4Fe-4S dicluster domain-containing protein K11260 fwdG; 4Fe-4S ferredoxin D RJ40_08415 formylmethanofuran dehydrogenase K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12] D RJ40_06020 fhcD; formylmethanofuran--tetrahydromethanopterin N-formyltransferase K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101] D RJ40_10830 mch; methenyltetrahydromethanopterin cyclohydrolase K01499 mch; methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] D RJ40_06365 F420-dependent methylenetetrahydromethanopterin dehydrogenase K00319 mtd; methylenetetrahydromethanopterin dehydrogenase [EC:1.5.98.1] D RJ40_08170 frhA; coenzyme F420 hydrogenase subunit alpha K00440 frhA; coenzyme F420 hydrogenase subunit alpha [EC:1.12.98.1] D RJ40_04920 hypothetical protein K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D RJ40_08185 frhB; coenzyme F420 hydrogenase subunit beta K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D RJ40_08175 frhD; coenzyme F420-reducing hydrogenase, FrhD protein K00442 frhD; coenzyme F420 hydrogenase subunit delta D RJ40_08180 frhG; coenzyme F420 hydrogenase subunit gamma K00443 frhG; coenzyme F420 hydrogenase subunit gamma [EC:1.12.98.1] D RJ40_06375 5,10-methylenetetrahydromethanopterin reductase K00320 mer; 5,10-methylenetetrahydromethanopterin reductase [EC:1.5.98.2] D RJ40_06120 tetrahydromethanopterin S-methyltransferase subunit A K00577 mtrA; tetrahydromethanopterin S-methyltransferase subunit A [EC:7.2.1.4] D RJ40_06130 mtrA; tetrahydromethanopterin S-methyltransferase subunit A K00577 mtrA; tetrahydromethanopterin S-methyltransferase subunit A [EC:7.2.1.4] D RJ40_06115 mtrB; tetrahydromethanopterin S-methyltransferase subunit B K00578 mtrB; tetrahydromethanopterin S-methyltransferase subunit B [EC:7.2.1.4] D RJ40_06110 tetrahydromethanopterin S-methyltransferase subunit C K00579 mtrC; tetrahydromethanopterin S-methyltransferase subunit C [EC:7.2.1.4] D RJ40_06105 tetrahydromethanopterin S-methyltransferase subunit D K00580 mtrD; tetrahydromethanopterin S-methyltransferase subunit D [EC:7.2.1.4] D RJ40_06100 tetrahydromethanopterin S-methyltransferase subunit E K00581 mtrE; tetrahydromethanopterin S-methyltransferase subunit E [EC:7.2.1.4] D RJ40_06125 tetrahydromethanopterin S-methyltransferase subunit F K00582 mtrF; tetrahydromethanopterin S-methyltransferase subunit F [EC:7.2.1.4] D RJ40_06135 tetrahydromethanopterin S-methyltransferase subunit H K00584 mtrH; tetrahydromethanopterin S-methyltransferase subunit H [EC:7.2.1.4] D RJ40_03780 mcrA; coenzyme-B sulfoethylthiotransferase subunit alpha K00399 mcrA; methyl-coenzyme M reductase alpha subunit [EC:2.8.4.1] D RJ40_06095 mcrA; coenzyme-B sulfoethylthiotransferase subunit alpha K00399 mcrA; methyl-coenzyme M reductase alpha subunit [EC:2.8.4.1] D RJ40_06565 atwA; methyl coenzyme M reductase system, component A2 K00400 K00400; methyl coenzyme M reductase system, component A2 D RJ40_03765 mcrB; coenzyme-B sulfoethylthiotransferase subunit beta K00401 mcrB; methyl-coenzyme M reductase beta subunit [EC:2.8.4.1] D RJ40_06075 mcrB; coenzyme-B sulfoethylthiotransferase subunit beta K00401 mcrB; methyl-coenzyme M reductase beta subunit [EC:2.8.4.1] D RJ40_03775 mcrG; coenzyme-B sulfoethylthiotransferase subunit gamma K00402 mcrG; methyl-coenzyme M reductase gamma subunit [EC:2.8.4.1] D RJ40_06090 mcrG; coenzyme-B sulfoethylthiotransferase subunit gamma K00402 mcrG; methyl-coenzyme M reductase gamma subunit [EC:2.8.4.1] D RJ40_06085 mcrC; methyl-coenzyme M reductase I operon protein C K03421 mcrC; methyl-coenzyme M reductase subunit C D RJ40_06080 mcrD; methyl-coenzyme M reductase operon protein D K03422 mcrD; methyl-coenzyme M reductase subunit D D RJ40_03770 mcrD; methyl-coenzyme M reductase operon protein D K03422 mcrD; methyl-coenzyme M reductase subunit D D RJ40_06045 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RJ40_10045 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RJ40_06040 hdrB; CoB--CoM heterodisulfide reductase subunit B K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RJ40_06035 hdrC; CoB--CoM heterodisulfide reductase subunit C K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RJ40_06050 hydrogenase iron-sulfur subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D RJ40_04300 Ni/Fe hydrogenase subunit alpha K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5] D RJ40_04305 F420-nonreducing hydrogenase K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5] D RJ40_01265 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_01270 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_03495 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_08345 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_10880 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07295 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07290 pyruvate synthase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10885 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10870 pyruvate ferredoxin oxidoreductase subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_07305 ferredoxin K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_10875 4Fe-4S dicluster domain-containing protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_09390 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RJ40_11125 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D RJ40_10850 cofactor-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RJ40_09385 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RJ40_07430 comE; sulfopyruvate decarboxylase subunit beta K24393 comDE; sulfopyruvate decarboxylase [EC:4.1.1.79] D RJ40_08105 cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofH K11781 cofH; 5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase [EC:2.5.1.147] D RJ40_09445 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG K11780 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [EC:4.3.1.32] D RJ40_09450 cofC; 2-phospho-L-lactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105] D RJ40_06725 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] D RJ40_02875 coenzyme F420-0:L-glutamate ligase K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] D RJ40_05985 aksA; homoaconitate hydratase K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-] D RJ40_05980 homoaconitate hydratase family protein K16792 aksD; methanogen homoaconitase large subunit [EC:4.2.1.114] D RJ40_05975 3-isopropylmalate dehydratase K16793 aksE; methanogen homoaconitase small subunit [EC:4.2.1.114] D RJ40_05965 isocitrate/isopropylmalate dehydrogenase family protein K10978 aksF; methanogen homoisocitrate dehydrogenase [EC:1.1.1.87 1.1.1.-] D RJ40_09395 mfnA; tyrosine decarboxylase MfnA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D RJ40_03470 ATP-grasp domain-containing protein K06914 mfnD; tyramine---L-glutamate ligase [EC:6.3.4.24] D RJ40_10540 (5-formylfuran-3-yl)methyl phosphate synthase K09733 mfnB; (5-formylfuran-3-yl)methyl phosphate synthase [EC:4.2.3.153] D RJ40_07750 uridylate kinase K07144 mfnE; 5-(aminomethyl)-3-furanmethanol phosphate kinase [EC:2.7.4.31] D RJ40_03465 H4MPT-linked C1 transfer pathway protein K07072 mfnF; (4-(4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl)furan-2-yl)methanamine synthase [EC:2.5.1.131] C 00910 Nitrogen metabolism [PATH:maqe00910] D RJ40_03190 cfbC; Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit K02588 nifH; nitrogenase iron protein NifH D RJ40_01465 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RJ40_04990 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RJ40_04940 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_12605 gltA; NADPH-dependent glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RJ40_11195 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D RJ40_00050 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:maqe00920] D RJ40_11710 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RJ40_11705 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RJ40_00230 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D RJ40_01045 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RJ40_10305 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RJ40_07400 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RJ40_01050 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:maqe00061] D RJ40_06655 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:maqe00071] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_06655 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RJ40_08525 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_08560 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism C 00564 Glycerophospholipid metabolism [PATH:maqe00564] D RJ40_02310 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RJ40_02080 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D RJ40_09950 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D RJ40_04555 NAD(P)-dependent glycerol-1-phosphate dehydrogenase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] D RJ40_11320 phosphoglycerol geranylgeranyltransferase K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D RJ40_10025 geranylgeranylglycerol-phosphate geranylgeranyltransferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D RJ40_12810 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] D RJ40_04645 NAD(P)/FAD-dependent oxidoreductase K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:maqe00230] D RJ40_06795 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D RJ40_11220 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RJ40_09015 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RJ40_08805 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RJ40_12820 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D RJ40_04175 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D RJ40_08145 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D RJ40_09435 purS; phosphoribosylformylglycinamidine synthase, purS protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D RJ40_09430 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RJ40_08800 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D RJ40_07595 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D RJ40_09440 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D RJ40_11370 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RJ40_12715 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RJ40_09400 purine phosphoribosyltransferase family protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RJ40_03475 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RJ40_11770 carbohydrate kinase family protein K22026 K22026; nucleoside kinase [EC:2.7.1.73 2.7.1.213 2.7.1.-] D RJ40_10535 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RJ40_10925 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RJ40_07125 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D RJ40_03345 guaA; glutamine-hydrolyzing GMP synthase subunit GuaA K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RJ40_11040 GMP synthase subunit A K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RJ40_05725 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RJ40_04880 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D RJ40_06895 HD domain-containing protein K01129 dgt; dGTPase [EC:3.1.5.1] D RJ40_12515 cyaB; class IV adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D RJ40_08000 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RJ40_06415 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D RJ40_00400 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D RJ40_06235 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RJ40_03330 adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D RJ40_06970 AAA family ATPase K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D RJ40_11195 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:maqe00240] D RJ40_00030 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RJ40_00035 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RJ40_10120 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RJ40_10115 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D RJ40_12770 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D RJ40_11405 dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D RJ40_11400 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D RJ40_12815 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D RJ40_08515 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D RJ40_03745 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D RJ40_10925 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RJ40_03350 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D RJ40_06225 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D RJ40_03475 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RJ40_02165 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D RJ40_11770 carbohydrate kinase family protein K22026 K22026; nucleoside kinase [EC:2.7.1.73 2.7.1.213 2.7.1.-] D RJ40_06415 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D RJ40_07200 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RJ40_07225 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RJ40_04880 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D RJ40_11310 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D RJ40_06390 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D RJ40_05725 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RJ40_10550 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D RJ40_08360 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:maqe00250] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_11345 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RJ40_12800 ornithine cyclodeaminase family protein K19244 ala; alanine dehydrogenase [EC:1.4.1.1] D RJ40_02290 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D RJ40_12870 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RJ40_11735 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RJ40_08000 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RJ40_11370 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RJ40_10120 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RJ40_10115 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D RJ40_01445 acetyl ornithine aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RJ40_02925 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RJ40_12605 gltA; NADPH-dependent glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RJ40_01465 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RJ40_04990 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RJ40_01450 aldehyde dehydrogenase family protein K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D RJ40_04940 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_00030 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RJ40_00035 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RJ40_09430 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RJ40_07030 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RJ40_08805 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:maqe00260] D RJ40_08795 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RJ40_02550 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RJ40_12385 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RJ40_10895 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RJ40_09470 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RJ40_11125 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D RJ40_10850 cofactor-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RJ40_09385 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_07480 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RJ40_07485 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RJ40_07515 TrpB-like pyridoxal phosphate-dependent enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:maqe00270] D RJ40_01045 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RJ40_10305 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RJ40_07400 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RJ40_01050 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D RJ40_06665 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RJ40_11645 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RJ40_03685 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D RJ40_03690 5'-methylthioadenosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D RJ40_10040 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D RJ40_05215 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RJ40_05895 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RJ40_08795 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RJ40_02550 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RJ40_12385 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RJ40_00260 CBS domain-containing protein K23975 E2.8.1.16; L-aspartate semialdehyde sulfurtransferase [EC:2.8.1.16] D RJ40_00265 4Fe-4S dicluster domain-containing protein K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin D RJ40_03885 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07735 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_11410 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RJ40_09385 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:maqe00280] D RJ40_03885 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_08455 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:maqe00290] D RJ40_12695 2-isopropylmalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21] D RJ40_03040 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RJ40_03045 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RJ40_03050 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D RJ40_12690 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RJ40_12685 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RJ40_08155 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RJ40_00055 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RJ40_03885 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RJ40_10205 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:maqe00300] D RJ40_12385 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RJ40_08795 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RJ40_02550 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RJ40_02535 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RJ40_02540 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D RJ40_03340 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RJ40_02485 M20 family peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RJ40_06635 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RJ40_03260 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D RJ40_03265 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RJ40_05985 aksA; homoaconitate hydratase K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-] D RJ40_05980 homoaconitate hydratase family protein K16792 aksD; methanogen homoaconitase large subunit [EC:4.2.1.114] D RJ40_05975 3-isopropylmalate dehydratase K16793 aksE; methanogen homoaconitase small subunit [EC:4.2.1.114] D RJ40_05965 isocitrate/isopropylmalate dehydrogenase family protein K10978 aksF; methanogen homoisocitrate dehydrogenase [EC:1.1.1.87 1.1.1.-] D RJ40_04810 PLP-dependent aminotransferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] C 00310 Lysine degradation [PATH:maqe00310] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_02925 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RJ40_05065 ablA; lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] C 00220 Arginine biosynthesis [PATH:maqe00220] D RJ40_12825 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D RJ40_12870 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RJ40_11735 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RJ40_11200 amidinotransferase K01478 arcA; arginine deiminase [EC:3.5.3.6] D RJ40_09430 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RJ40_04940 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_00030 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RJ40_00035 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RJ40_11195 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D RJ40_01465 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RJ40_04990 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07345 argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D RJ40_07340 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D RJ40_07355 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D RJ40_03340 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:maqe00330] D RJ40_07200 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RJ40_07225 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RJ40_04530 arginine decarboxylase, pyruvoyl-dependent K02626 pdaD; arginine decarboxylase [EC:4.1.1.19] D RJ40_12445 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D RJ40_01195 formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RJ40_01455 hypothetical protein K00318 PRODH; proline dehydrogenase [EC:1.5.5.2] D RJ40_01450 aldehyde dehydrogenase family protein K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D RJ40_06485 alpha/beta fold hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:maqe00340] D RJ40_11640 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D RJ40_09765 hisE; phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D RJ40_04325 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D RJ40_11635 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D RJ40_10545 nickel transporter K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D RJ40_00235 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D RJ40_05900 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D RJ40_11630 hisB; imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D RJ40_03335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RJ40_03395 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:maqe00350] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_03335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RJ40_09395 mfnA; tyrosine decarboxylase MfnA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D RJ40_08525 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_08560 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_02925 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:maqe00360] D RJ40_11165 phenylacetate--CoA ligase family protein K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D RJ40_11170 phenylacetate--CoA ligase family protein K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_03335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RJ40_01195 formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:maqe00380] D RJ40_07005 cyclase family protein K07130 kynB; arylformamidase [EC:3.5.1.9] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_01195 formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:maqe00400] D RJ40_00525 aldolase K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11] D RJ40_08670 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_08675 fructose-bisphosphate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RJ40_08665 3-dehydroquinate synthase II K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24] D RJ40_08680 type I 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D RJ40_07175 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D RJ40_08650 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D RJ40_08640 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D RJ40_07510 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RJ40_07505 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D RJ40_07500 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D RJ40_06195 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D RJ40_07490 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D RJ40_07495 indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D RJ40_07480 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RJ40_07485 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RJ40_07515 TrpB-like pyridoxal phosphate-dependent enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RJ40_08695 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_03335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:maqe00410] D RJ40_09395 mfnA; tyrosine decarboxylase MfnA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D RJ40_01445 acetyl ornithine aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RJ40_03995 phosphopantothenate/pantothenate synthetase K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] C 00430 Taurine and hypotaurine metabolism D RJ40_12800 ornithine cyclodeaminase family protein K19244 ala; alanine dehydrogenase [EC:1.4.1.1] C 00440 Phosphonate and phosphinate metabolism D RJ40_07600 MBL fold metallo-hydrolase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:maqe00450] D RJ40_06665 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RJ40_01025 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D RJ40_04365 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D RJ40_09470 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:maqe00470] D RJ40_09430 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RJ40_06635 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RJ40_03265 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:maqe00480] D RJ40_02935 DUF3458 domain-containing protein K01256 pepN; aminopeptidase N [EC:3.4.11.2] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:maqe00543] D RJ40_01045 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RJ40_10305 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RJ40_07400 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:maqe00730] D RJ40_00470 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D RJ40_08125 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D RJ40_03965 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D RJ40_01015 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_03660 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_09870 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_10750 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RJ40_07140 thiazole biosynthesis protein K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59] D RJ40_05320 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D RJ40_05315 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D RJ40_09190 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D RJ40_06970 AAA family ATPase K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D RJ40_00755 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RJ40_06235 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:maqe00740] D RJ40_03555 5-amino-6-(5-phosphoribosylamino)uracil reductase K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D RJ40_04390 RibD family protein K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D RJ40_04445 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D RJ40_08470 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D RJ40_07580 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D RJ40_07585 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D RJ40_08465 DUF120 domain-containing protein K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D RJ40_07260 FAD synthase K14656 ribL; FAD synthetase [EC:2.7.7.2] D RJ40_05320 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D RJ40_06795 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D RJ40_06735 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:maqe00750] D RJ40_10895 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RJ40_08020 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D RJ40_08025 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:maqe00760] D RJ40_11555 nadX; aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D RJ40_01055 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72] D RJ40_11560 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72] D RJ40_11565 carboxylating.nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D RJ40_03695 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D RJ40_03475 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RJ40_10630 nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D RJ40_05730 NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D RJ40_09170 NAD+ synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D RJ40_12430 NAD(+)/NADH kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D RJ40_02925 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:maqe00770] D RJ40_12690 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RJ40_12685 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RJ40_08155 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RJ40_00055 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RJ40_11390 ketopantoate reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D RJ40_02700 ketopantoate reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D RJ40_04000 GHMP kinase K06982 pok; pantoate kinase [EC:2.7.1.169] D RJ40_03995 phosphopantothenate/pantothenate synthetase K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D RJ40_04005 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D RJ40_10055 phosphopantetheine adenylyltransferase K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D RJ40_07105 DUF359 domain-containing protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] D RJ40_03885 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RJ40_09395 mfnA; tyrosine decarboxylase MfnA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00780 Biotin metabolism [PATH:maqe00780] D RJ40_00645 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:maqe00785] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00790 Folate biosynthesis [PATH:maqe00790] D RJ40_09460 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D RJ40_06780 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RJ40_08850 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D RJ40_06785 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RJ40_06790 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RJ40_08160 GTP cyclohydrolase I FolE2 K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39] D RJ40_04030 hypothetical protein K09739 mptD; dihydroneopterin aldolase [EC:4.1.2.25] D RJ40_05635 DUF115 domain-containing protein K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D RJ40_12620 GHMP kinase K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D RJ40_06720 MBL fold metallo-hydrolase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D RJ40_09775 MBL fold metallo-hydrolase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D RJ40_02495 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RJ40_10150 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RJ40_00995 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RJ40_03670 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RJ40_07975 molybdenum cofactor biosynthesis protein MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D RJ40_05475 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RJ40_05480 molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RJ40_11395 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:maqe00670] D RJ40_09465 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RJ40_09470 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RJ40_04175 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D RJ40_12715 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RJ40_08360 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D RJ40_00510 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] D RJ40_11645 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RJ40_05895 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:maqe00860] D RJ40_09540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RJ40_00090 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D RJ40_00080 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RJ40_00085 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RJ40_00075 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D RJ40_06470 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D RJ40_00070 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D RJ40_00095 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D RJ40_03905 cfbA; sirohydrochlorin nickelochelatase K22011 cfbA; sirohydrochlorin cobalto/nickelchelatase [EC:4.99.1.3 4.99.1.11] D RJ40_11070 cobalt-factor II C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D RJ40_11085 cobJ; precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D RJ40_11075 cobalt-precorrin-4/precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D RJ40_11080 cbiG; cobalt-precorrin 5A hydrolase K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D RJ40_11095 cobalt-precorrin-5B (C(1))-methyltransferase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D RJ40_11065 methyltransferase domain-containing protein K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196] D RJ40_11100 cobalt-precorrin-7 (C(5))-methyltransferase K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289] D RJ40_11090 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D RJ40_11110 cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D RJ40_11105 cobN; cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D RJ40_04250 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D RJ40_08015 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D RJ40_08495 hypothetical protein K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90] D RJ40_02590 5-deoxyadenosylcobinamide phosphate nucleotidyltransferase K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62] D RJ40_11000 cobS; adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D RJ40_03890 cfbB; Ni-sirohydrochlorin a,c-diamide synthase K22012 cfbB; Ni-sirohydrochlorin a,c-diamide synthase [EC:6.3.5.12] D RJ40_03895 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit K21611 cfbD; Ni-sirohydrochlorin a,c-diamide reductive cyclase subunit CfbD [EC:6.3.3.7] D RJ40_03900 cfbE; coenzyme F430 synthase K21612 cfbE; coenzyme F430 synthetase [EC:6.4.1.9] D RJ40_06750 putative cobaltochelatase K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis D RJ40_06735 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:maqe00900] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_08455 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D RJ40_08430 hmgA; hydroxymethylglutaryl-CoA reductase (NADPH) K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D RJ40_09565 mvk; mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D RJ40_09560 isopentenyl phosphate kinase family protein K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D RJ40_06745 DUF521 domain-containing protein K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182] D RJ40_12530 DUF126 domain-containing protein K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182] D RJ40_06740 UbiD family decarboxylase K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126] D RJ40_06735 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RJ40_09555 type 2 isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D RJ40_09545 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RJ40_09715 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RJ40_09710 uppS; di-trans,poly-cis-decaprenylcistransferase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:maqe00906] D RJ40_05270 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D RJ40_05265 prenyltransferase K20616 lyeJ; lycopene elongase/hydratase (dihydrobisanhydrobacterioruberin-forming) [EC:2.5.1.150] D RJ40_05275 crtI; phytoene desaturase K20611 crtD; 1-hydroxy-2-isopentenylcarotenoid 3,4-desaturase [EC:1.3.99.37] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:maqe00523] D RJ40_12270 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RJ40_07025 nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RJ40_07020 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D RJ40_12275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RJ40_00060 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D RJ40_12275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:maqe00261] D RJ40_08795 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RJ40_02550 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RJ40_02535 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RJ40_02540 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:maqe00521] D RJ40_06965 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RJ40_11220 glmM; phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RJ40_01290 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D RJ40_12435 bifunctional fructose-bisphosphatase/inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RJ40_12270 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RJ40_07025 nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RJ40_07020 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D RJ40_12275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RJ40_00060 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D RJ40_06965 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:maqe00525] D RJ40_12270 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RJ40_07025 nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RJ40_07020 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D RJ40_12275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:maqe00401] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_03335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D RJ40_07510 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RJ40_07505 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics C 00999 Biosynthesis of various plant secondary metabolites D RJ40_11645 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:maqe00627] D RJ40_01195 formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RJ40_08305 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RJ40_11210 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RJ40_06735 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:maqe00625] D RJ40_08525 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_08560 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_03190 cfbC; Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit K02588 nifH; nitrogenase iron protein NifH C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:maqe00633] D RJ40_02225 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D RJ40_10880 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07295 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RJ40_07290 pyruvate synthase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10885 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RJ40_10870 pyruvate ferredoxin oxidoreductase subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RJ40_07300 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D RJ40_07305 ferredoxin K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RJ40_10875 4Fe-4S dicluster domain-containing protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00642 Ethylbenzene degradation C 00643 Styrene degradation [PATH:maqe00643] D RJ40_01195 formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:maqe00626] D RJ40_08525 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RJ40_08560 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:maqe03020] D RJ40_04765 rpoB; DNA-directed RNA polymerase subunit B K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] D RJ40_04760 DNA-directed RNA polymerase subunit B'' K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6] D RJ40_04770 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D RJ40_04775 rpoA2; DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D RJ40_09615 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D RJ40_08135 DNA-directed RNA polymerase subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D RJ40_07095 DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D RJ40_04095 RNA polymerase Rpb4 family protein K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D RJ40_04755 DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D RJ40_09585 DNA-directed RNA polymerase subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D RJ40_09595 DNA-directed RNA polymerase subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D RJ40_10185 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] C 03022 Basal transcription factors [PATH:maqe03022] D RJ40_05865 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D RJ40_02975 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D RJ40_03490 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D RJ40_00300 transcription factor K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D RJ40_11380 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:maqe03010] D RJ40_09575 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RJ40_06325 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RJ40_09625 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RJ40_06255 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RJ40_06770 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RJ40_06280 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RJ40_09600 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RJ40_10980 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RJ40_09620 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RJ40_06775 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RJ40_09630 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RJ40_06285 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RJ40_05350 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RJ40_06310 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RJ40_06335 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RJ40_05365 30S ribosomal protein S3ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D RJ40_06295 30S ribosomal protein S4e K02987 RP-S4e; small subunit ribosomal protein S4e D RJ40_05820 30S ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D RJ40_05840 30S ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D RJ40_02530 30S ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e D RJ40_04160 30S ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D RJ40_07110 30S ribosomal protein S24e K02974 RP-S24e; small subunit ribosomal protein S24e D RJ40_04595 30S ribosomal protein S27e K02978 RP-S27e; small subunit ribosomal protein S27e D RJ40_07115 30S ribosomal protein S27ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D RJ40_10935 30S ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e D RJ40_05440 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RJ40_06340 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RJ40_06355 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RJ40_06290 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RJ40_06275 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RJ40_05435 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RJ40_05445 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RJ40_05430 rpl12p; 50S ribosomal protein P1 K02869 RP-L12; large subunit ribosomal protein L12 D RJ40_09605 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RJ40_06305 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RJ40_06245 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RJ40_06260 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RJ40_06330 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RJ40_06345 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RJ40_06300 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RJ40_06320 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RJ40_06250 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RJ40_06350 rpl4p; 50S ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D RJ40_10940 50S ribosomal protein L7ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D RJ40_11695 50S ribosomal protein L16 K02866 RP-L10e; large subunit ribosomal protein L10e D RJ40_10155 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D RJ40_09610 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e D RJ40_06265 50S ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D RJ40_04100 50S ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D RJ40_10930 50S ribosomal protein L24e K02896 RP-L24e; large subunit ribosomal protein L24e D RJ40_04780 50S ribosomal protein L30e K02908 RP-L30e; large subunit ribosomal protein L30e D RJ40_04140 50S ribosomal protein L31e K02910 RP-L31e; large subunit ribosomal protein L31e D RJ40_06270 50S ribosomal protein L32e K02912 RP-L32e; large subunit ribosomal protein L32e D RJ40_08810 50S ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e D RJ40_10180 50S ribosomal protein L37ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D RJ40_04145 50S ribosomal protein L39e K02924 RP-L39e; large subunit ribosomal protein L39e D RJ40_07130 50S ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D RJ40_04590 50S ribosomal protein L44e K02929 RP-L44e; large subunit ribosomal protein L44e D RJ40_04130 50S ribosomal protein L18a K02944 RP-LX; large subunit ribosomal protein LX D RJ40_09505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:maqe00970] D RJ40_09540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RJ40_11335 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RJ40_11330 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RJ40_11340 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RJ40_11740 gatD; Glu-tRNA(Gln) amidotransferase subunit GatD K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D RJ40_11745 gatE; Glu-tRNA(Gln) amidotransferase subunit GatE K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D RJ40_00245 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RJ40_06670 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D RJ40_03635 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RJ40_11305 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RJ40_11460 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RJ40_06815 O-phosphoserine--tRNA ligase K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27] D RJ40_10755 pscS; O-phospho-L-seryl-tRNA:Cys-tRNA synthase K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73] D RJ40_04365 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RJ40_10575 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RJ40_04335 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RJ40_05530 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RJ40_11190 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RJ40_06805 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RJ40_04540 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RJ40_10645 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RJ40_05910 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RJ40_05905 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RJ40_07950 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RJ40_05915 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:maqe03060] D RJ40_06240 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RJ40_00605 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RJ40_00610 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RJ40_04115 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RJ40_04120 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RJ40_05455 protein translocase SEC61 complex subunit gamma K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D RJ40_05850 signal recognition particle protein Srp19 K03105 SRP19; signal recognition particle subunit SRP19 D RJ40_08100 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RJ40_04670 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RJ40_03840 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RJ40_03865 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:maqe04122] D RJ40_01015 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_03660 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_09870 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_09860 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D RJ40_00995 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RJ40_03670 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RJ40_02495 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RJ40_01000 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein D RJ40_03235 MoaD family protein K03636 moaD; sulfur-carrier protein D RJ40_01005 HesA/MoeB/ThiF family protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D RJ40_10150 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RJ40_07975 molybdenum cofactor biosynthesis protein MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D RJ40_10750 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RJ40_01040 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome [PATH:maqe03050] D RJ40_12535 AAA family ATPase K03420 psmR; proteasome regulatory subunit D RJ40_12545 AAA family ATPase K03420 psmR; proteasome regulatory subunit D RJ40_10170 psmA; archaeal proteasome endopeptidase complex subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RJ40_02900 psmB; archaeal proteasome endopeptidase complex subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:maqe03018] D RJ40_01320 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09580 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_02660 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RJ40_02620 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RJ40_09550 RNase J family beta-CASP ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-] D RJ40_05130 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_12730 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_04035 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] B B 09124 Replication and repair C 03030 DNA replication [PATH:maqe03030] D RJ40_12780 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RJ40_05025 ribonuclease HI family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RJ40_04655 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RJ40_11415 DNA polymerase K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D RJ40_08075 DNA-directed DNA polymerase II small subunit K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D RJ40_08245 DNA-directed DNA polymerase II large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D RJ40_03000 minichromosome maintenance protein MCM K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D RJ40_03005 minichromosome maintenance protein MCM K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D RJ40_04580 priS; DNA primase catalytic subunit PriS K02683 priS; DNA primase small subunit [EC:2.7.7.102] D RJ40_02510 priL; DNA primase regulatory subunit PriL K18882 priL; DNA primase large subunit D RJ40_02505 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D RJ40_02995 replication factor C small subunit K04801 rfcS; replication factor C small subunit D RJ40_03990 replication protein C K04801 rfcS; replication factor C small subunit D RJ40_11605 replication factor C large subunit K04800 rfcL; replication factor C large subunit D RJ40_03315 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RJ40_09325 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:maqe03410] D RJ40_09205 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D RJ40_03735 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RJ40_11975 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RJ40_02505 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D RJ40_03315 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RJ40_09325 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D RJ40_05945 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RJ40_10140 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03420 Nucleotide excision repair [PATH:maqe03420] D RJ40_12350 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RJ40_12340 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D RJ40_12345 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D RJ40_00820 PD-(D/E)XK nuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RJ40_11380 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RJ40_02505 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D RJ40_09325 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:maqe03430] D RJ40_12130 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RJ40_12135 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D RJ40_00820 PD-(D/E)XK nuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RJ40_04190 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RJ40_04195 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RJ40_10140 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RJ40_02505 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D RJ40_09325 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination [PATH:maqe03440] D RJ40_10140 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RJ40_05110 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RJ40_05105 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RJ40_05115 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] C 03450 Non-homologous end-joining D RJ40_03315 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 D RJ40_07100 DNA-directed RNA polymerase, subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D RJ40_05450 transcription elongation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus and Alphavirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:maqe02010] D RJ40_09225 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D RJ40_09230 ABC transporter permease subunit K05773 tupB; tungstate transport system permease protein D RJ40_09235 ABC transporter ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D RJ40_03060 wtpA; tungstate ABC transporter substrate-binding protein WtpA K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D RJ40_03400 wtpA; tungstate ABC transporter substrate-binding protein WtpA K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D RJ40_03405 ABC transporter permease subunit K15496 wtpB; molybdate/tungstate transport system permease protein D RJ40_03410 ABC transporter ATP-binding protein K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] D RJ40_11710 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RJ40_11705 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RJ40_09245 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RJ40_09255 ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D RJ40_09260 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RJ40_12405 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RJ40_12410 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RJ40_12415 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RJ40_12400 proline/glycine betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D RJ40_12395 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D RJ40_12020 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D RJ40_12005 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RJ40_12010 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RJ40_12015 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D RJ40_12235 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D RJ40_12225 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RJ40_08085 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D RJ40_08095 metal ABC transporter permease K09816 znuB; zinc transport system permease protein D RJ40_08090 metal ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RJ40_04625 energy-coupling factor ABC transporter substrate-binding protein K02009 cbiN; cobalt/nickel transport protein D RJ40_03585 cobalamin biosynthesis protein CbiN K02009 cbiN; cobalt/nickel transport protein D RJ40_03580 cbiM; cobalt transporter CbiM K02007 cbiM; cobalt/nickel transport system permease protein D RJ40_04620 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein D RJ40_04630 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D RJ40_03595 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D RJ40_03590 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RJ40_04635 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RJ40_00650 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D RJ40_09355 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D RJ40_07915 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein D RJ40_07910 ABC transporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein D RJ40_01505 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D RJ40_01500 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:maqe03070] D RJ40_00605 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RJ40_00610 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RJ40_06240 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RJ40_04120 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RJ40_04115 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:maqe02020] D RJ40_12235 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D RJ40_03920 triphosphoribosyl-dephospho-CoA synthase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D RJ40_02305 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RJ40_04905 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1 D RJ40_04940 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_01575 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RJ40_02715 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_07320 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_08035 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_08615 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_01610 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RJ40_01620 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RJ40_01615 cheB; chemotaxis-specific protein-glutamate methyltransferase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RJ40_10470 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D RJ40_10725 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D RJ40_07050 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D RJ40_10370 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:maqe02024] D RJ40_07510 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RJ40_07505 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D RJ40_06655 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RJ40_06240 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RJ40_04120 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RJ40_04115 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:maqe02030] D RJ40_01610 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RJ40_02715 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_07320 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_08035 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_08615 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_01620 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RJ40_01605 chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D RJ40_01615 cheB; chemotaxis-specific protein-glutamate methyltransferase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RJ40_01600 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D RJ40_01575 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] C 02040 Flagellar assembly C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells [PATH:maqe04820] D RJ40_01410 cation-transporting P-type ATPase K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha [EC:7.2.2.13] D RJ40_01320 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09580 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04981 Folate transport and metabolism [PATH:maqe04981] D RJ40_00510 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] D RJ40_09470 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:maqe01501] D RJ40_10110 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D RJ40_10105 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:maqe01000] C 01001 Protein kinases [BR:maqe01001] D RJ40_07120 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1] D RJ40_07955 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D RJ40_09180 serine/threonine protein phosphatase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D RJ40_01610 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:maqe01009] D RJ40_08140 translation initiation factor IF-2 subunit beta K03238 EIF2S2; translation initiation factor 2 subunit 2 D RJ40_05895 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] C 01002 Peptidases and inhibitors [BR:maqe01002] D RJ40_04320 peptidase A24 K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D RJ40_03345 guaA; glutamine-hydrolyzing GMP synthase subunit GuaA K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RJ40_11040 GMP synthase subunit A K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RJ40_08805 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RJ40_07030 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RJ40_11345 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RJ40_03365 hypothetical protein K05520 yhbO; deglycase [EC:3.5.1.124] D RJ40_11240 type 1 glutamine amidotransferase K05520 yhbO; deglycase [EC:3.5.1.124] D RJ40_03545 artA; archaeosortase A K24447 artA; archaeosortase A [EC:3.4.22.-] D RJ40_02935 DUF3458 domain-containing protein K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RJ40_02485 M20 family peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RJ40_07610 type II methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RJ40_07615 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D RJ40_07145 htpX; zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D RJ40_11595 peptidase M54 K06974 amzA; archaemetzincin [EC:3.4.-.-] D RJ40_10110 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D RJ40_09020 lonB; ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D RJ40_08100 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RJ40_04670 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RJ40_03840 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RJ40_03865 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RJ40_06485 alpha/beta fold hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D RJ40_03560 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-] D RJ40_10170 psmA; archaeal proteasome endopeptidase complex subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RJ40_02900 psmB; archaeal proteasome endopeptidase complex subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RJ40_08690 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-] D RJ40_09030 TldD/PmbA family protein K03592 pmbA; PmbA protein D RJ40_09025 TldD/PmbA family protein K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:maqe01003] D RJ40_00565 aglJ; S-layer glycoprotein N-glycosyltransferase AglJ K23684 aglJ; dolichol-phosphate hexosyltransferase [EC:2.4.1.-] D RJ40_04980 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:maqe01011] D RJ40_03545 artA; archaeosortase A K24447 artA; archaeosortase A [EC:3.4.22.-] C 01004 Lipid biosynthesis proteins [BR:maqe01004] D RJ40_01265 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_01270 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_03495 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_08345 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RJ40_06655 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RJ40_03650 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:maqe01006] D RJ40_09545 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RJ40_09715 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RJ40_05270 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 01007 Amino acid related enzymes [BR:maqe01007] D RJ40_09540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RJ40_07950 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RJ40_05915 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RJ40_06805 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RJ40_04365 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RJ40_05530 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RJ40_10575 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RJ40_04335 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RJ40_11190 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RJ40_06670 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D RJ40_10645 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RJ40_03635 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RJ40_11460 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RJ40_04540 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RJ40_11305 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RJ40_00245 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RJ40_06815 O-phosphoserine--tRNA ligase K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27] D RJ40_05910 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RJ40_05905 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RJ40_00185 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_01755 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_07575 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RJ40_03260 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D RJ40_07990 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K10907 K10907; aminotransferase [EC:2.6.1.-] D RJ40_03335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RJ40_03340 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RJ40_01445 acetyl ornithine aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RJ40_00080 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RJ40_03885 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:maqe03000] D RJ40_05215 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RJ40_02975 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D RJ40_03490 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D RJ40_00985 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RJ40_10530 ArsR family transcriptional regulator K07721 K07721; ArsR family transcriptional regulator D RJ40_02120 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D RJ40_09725 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RJ40_08080 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RJ40_01065 metal-dependent transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D RJ40_10105 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RJ40_00645 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RJ40_06385 DUF128 domain-containing protein K09720 nrpRI; HTH-type transcriptional regulator, global nitrogen regulator NrpRI D RJ40_05795 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RJ40_09155 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RJ40_06360 Tfx family DNA-binding protein K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator D RJ40_09000 orotate phosphoribosyltransferase-like protein K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism D RJ40_08605 transcriptional regulator K07728 K07728; putative transcriptional regulator D RJ40_04420 transcriptional regulator K07729 K07729; putative transcriptional regulator D RJ40_06955 transcriptional regulator K07729 K07729; putative transcriptional regulator D RJ40_05400 winged helix-turn-helix transcriptional regulator K07730 K07730; putative transcriptional regulator D RJ40_08460 helix-turn-helix domain-containing protein K07731 K07731; putative transcriptional regulator D RJ40_07080 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C 03021 Transcription machinery [BR:maqe03021] D RJ40_05865 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D RJ40_02975 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D RJ40_03490 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D RJ40_00300 transcription factor K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D RJ40_11380 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RJ40_07100 DNA-directed RNA polymerase, subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D RJ40_05450 transcription elongation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5 D RJ40_04785 NusA-like transcription termination signal-binding factor K02600 nusA; transcription termination/antitermination protein NusA D RJ40_09770 NusA-like transcription termination signal-binding factor K02600 nusA; transcription termination/antitermination protein NusA D RJ40_12310 stage II sporulation protein E K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D RJ40_04770 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D RJ40_04775 rpoA2; DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D RJ40_04765 rpoB; DNA-directed RNA polymerase subunit B K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] D RJ40_04760 DNA-directed RNA polymerase subunit B'' K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6] D RJ40_09615 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D RJ40_07095 DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D RJ40_04095 RNA polymerase Rpb4 family protein K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D RJ40_04755 DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D RJ40_09585 DNA-directed RNA polymerase subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D RJ40_08135 DNA-directed RNA polymerase subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D RJ40_09595 DNA-directed RNA polymerase subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D RJ40_10185 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D RJ40_03540 transcription factor S K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:maqe03019] D RJ40_07100 DNA-directed RNA polymerase, subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D RJ40_05450 transcription elongation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5 D RJ40_00515 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D RJ40_12495 mRNA surveillance protein pelota K06965 PELO; protein pelota D RJ40_06800 prf1; peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D RJ40_10985 tuf; translation elongation factor EF-1 subunit alpha K03231 EEF1A; elongation factor 1-alpha D RJ40_02920 ribonuclease III family protein K03685 rnc; ribonuclease III [EC:3.1.26.3] D RJ40_09550 RNase J family beta-CASP ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-] D RJ40_02660 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RJ40_02620 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RJ40_01320 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09580 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_05130 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_12730 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_04035 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RJ40_05395 DEAD/DEAH box helicase K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-] C 03041 Spliceosome [BR:maqe03041] D RJ40_08830 ZPR1 zinc finger domain-containing protein K06874 ZPR1; zinc finger protein ZPR1 C 03011 Ribosome [BR:maqe03011] D RJ40_05365 30S ribosomal protein S3ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D RJ40_06295 30S ribosomal protein S4e K02987 RP-S4e; small subunit ribosomal protein S4e D RJ40_05820 30S ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D RJ40_05840 30S ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D RJ40_02530 30S ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e D RJ40_04160 30S ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D RJ40_07110 30S ribosomal protein S24e K02974 RP-S24e; small subunit ribosomal protein S24e D RJ40_04595 30S ribosomal protein S27e K02978 RP-S27e; small subunit ribosomal protein S27e D RJ40_07115 30S ribosomal protein S27ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D RJ40_10935 30S ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e D RJ40_06350 rpl4p; 50S ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D RJ40_10940 50S ribosomal protein L7ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D RJ40_11695 50S ribosomal protein L16 K02866 RP-L10e; large subunit ribosomal protein L10e D RJ40_10155 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D RJ40_09610 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e D RJ40_06265 50S ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D RJ40_04100 50S ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D RJ40_10930 50S ribosomal protein L24e K02896 RP-L24e; large subunit ribosomal protein L24e D RJ40_04780 50S ribosomal protein L30e K02908 RP-L30e; large subunit ribosomal protein L30e D RJ40_04140 50S ribosomal protein L31e K02910 RP-L31e; large subunit ribosomal protein L31e D RJ40_06270 50S ribosomal protein L32e K02912 RP-L32e; large subunit ribosomal protein L32e D RJ40_08810 50S ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e D RJ40_10180 50S ribosomal protein L37ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D RJ40_04145 50S ribosomal protein L39e K02924 RP-L39e; large subunit ribosomal protein L39e D RJ40_07130 50S ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D RJ40_04590 50S ribosomal protein L44e K02929 RP-L44e; large subunit ribosomal protein L44e D RJ40_09575 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RJ40_06325 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RJ40_09625 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RJ40_06255 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RJ40_06770 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RJ40_06280 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RJ40_09600 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RJ40_10980 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RJ40_09620 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RJ40_06775 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RJ40_09630 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RJ40_06285 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RJ40_05350 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RJ40_06310 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RJ40_06335 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RJ40_05440 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RJ40_06340 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RJ40_06355 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RJ40_06290 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RJ40_06275 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RJ40_05435 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RJ40_05445 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RJ40_09605 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RJ40_06305 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RJ40_06245 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RJ40_06260 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RJ40_06330 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RJ40_06345 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RJ40_06300 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RJ40_06320 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RJ40_06250 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RJ40_05430 rpl12p; 50S ribosomal protein P1 K02869 RP-L12; large subunit ribosomal protein L12 D RJ40_04130 50S ribosomal protein L18a K02944 RP-LX; large subunit ribosomal protein LX D RJ40_09505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:maqe03009] D RJ40_06455 RNA-processing protein K14564 NOP56; nucleolar protein 56 D RJ40_04605 RNA-protein complex protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D RJ40_02920 ribonuclease III family protein K03685 rnc; ribonuclease III [EC:3.1.26.3] D RJ40_07960 RNA-processing protein K06961 KRR1; ribosomal RNA assembly protein D RJ40_07955 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D RJ40_09180 serine/threonine protein phosphatase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D RJ40_03330 adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D RJ40_07800 DUF367 family protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D RJ40_12480 ribosome biogenesis/translation initiation ATPase RLI K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D RJ40_03300 GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein D RJ40_06315 ribonuclease P protein subunit K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D RJ40_10165 ribonuclease P K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D RJ40_10160 ribonuclease P K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D RJ40_05040 hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D RJ40_04135 translation initiation factor IF-6 K03264 EIF6; translation initiation factor 6 D RJ40_04015 NMD protein affecting ribosome stability and mRNA decay K07562 NMD3; 60S ribosomal export protein NMD3 D RJ40_10175 ribosome assembly factor SBDS K14574 SDO1; ribosome maturation protein SDO1 D RJ40_00515 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D RJ40_09670 GTP-binding protein K03595 era; GTPase D RJ40_06450 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K04795 flpA; fibrillarin-like pre-rRNA processing protein D RJ40_10940 50S ribosomal protein L7ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D RJ40_04785 NusA-like transcription termination signal-binding factor K02600 nusA; transcription termination/antitermination protein NusA D RJ40_09770 NusA-like transcription termination signal-binding factor K02600 nusA; transcription termination/antitermination protein NusA D RJ40_04085 16S ribosomal RNA methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RJ40_02500 RlmE family RNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D RJ40_07220 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D RJ40_08425 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D RJ40_02660 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RJ40_00755 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RJ40_07165 hflX; GTPase HflX K03665 hflX; GTPase D RJ40_05300 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RJ40_04165 YhbY family RNA-binding protein K07574 yhbY; RNA-binding protein D RJ40_10595 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:maqe03016] D RJ40_06315 ribonuclease P protein subunit K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D RJ40_10165 ribonuclease P K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D RJ40_10160 ribonuclease P K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D RJ40_04170 ribonuclease P K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D RJ40_00445 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D RJ40_00630 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D RJ40_00625 archease K24956 ZBTB8OS; protein archease D RJ40_10985 tuf; translation elongation factor EF-1 subunit alpha K03231 EEF1A; elongation factor 1-alpha D RJ40_09540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RJ40_04540 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RJ40_05530 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RJ40_04335 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RJ40_04365 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RJ40_06805 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RJ40_11190 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RJ40_00245 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RJ40_03635 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RJ40_11305 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RJ40_11460 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RJ40_10575 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RJ40_10645 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RJ40_05910 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RJ40_05905 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RJ40_07950 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RJ40_05915 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RJ40_05465 D-tyrosyl-tRNA(Tyr) deacylase K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D RJ40_11550 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] D RJ40_10000 tRNA (guanine(10)-N(2))-dimethyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D RJ40_08435 methyltransferase domain-containing protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RJ40_10125 methyltransferase domain-containing protein K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D RJ40_06810 twy1; 4-demethylwyosine synthase TYW1 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D RJ40_04010 SAM-dependent methyltransferase K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114] D RJ40_07280 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RJ40_06475 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D RJ40_03565 truD; tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D RJ40_04105 tRNA pseudouridine(54/55) synthase Pus10 K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D RJ40_01015 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_03660 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_09870 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_04575 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] D RJ40_05300 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RJ40_06885 RNB domain-containing ribonuclease K01147 rnb; exoribonuclease II [EC:3.1.13.1] D RJ40_04895 CCA tRNA nucleotidyltransferase K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D RJ40_05920 endA; tRNA-intron lyase K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D RJ40_04890 thpR; RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D RJ40_06670 aspS; aspartate--tRNA(Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D RJ40_06815 O-phosphoserine--tRNA ligase K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27] D RJ40_10755 pscS; O-phospho-L-seryl-tRNA:Cys-tRNA synthase K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73] D RJ40_00805 class I SAM-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D RJ40_11315 RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D RJ40_04110 trmY; tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] D RJ40_01300 methyltransferase domain-containing protein K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] D RJ40_00290 tRNA (cytidine(56)-2'-O)-methyltransferase K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] D RJ40_09860 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D RJ40_07120 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1] D RJ40_07970 hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121 D RJ40_10195 hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1 D RJ40_06790 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RJ40_06780 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RJ40_06785 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RJ40_12590 tgtA; tRNA guanosine(15) transglycosylase TgtA K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D RJ40_10750 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RJ40_08600 DUF1743 domain-containing protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] C 03012 Translation factors [BR:maqe03012] D RJ40_08380 eif1A; translation initiation factor eIF-1A K03236 EIF1A; translation initiation factor 1A D RJ40_04255 yciH; stress response translation initiation inhibitor YciH K03113 EIF1; translation initiation factor 1 D RJ40_04600 translation initiation factor IF-2 subunit alpha K03237 EIF2S1; translation initiation factor 2 subunit 1 D RJ40_08140 translation initiation factor IF-2 subunit beta K03238 EIF2S2; translation initiation factor 2 subunit 2 D RJ40_07085 translation initiation factor IF-2 subunit gamma K03242 EIF2S3; translation initiation factor 2 subunit 3 D RJ40_12440 translation initiation factor IF-5A K03263 EIF5A; translation initiation factor 5A D RJ40_05815 translation initiation factor IF-2 K03243 EIF5B; translation initiation factor 5B D RJ40_04135 translation initiation factor IF-6 K03264 EIF6; translation initiation factor 6 D RJ40_10985 tuf; translation elongation factor EF-1 subunit alpha K03231 EEF1A; elongation factor 1-alpha D RJ40_07740 elongation factor 1-beta K03232 EEF1B; elongation factor 1-beta D RJ40_06765 elongation factor EF-2 K03234 EEF2; elongation factor 2 D RJ40_09405 dph2; diphthamide biosynthesis enzyme Dph2 K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108] D RJ40_11775 diphthine--ammonia ligase K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D RJ40_06800 prf1; peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D RJ40_03025 methyltransferase domain-containing protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RJ40_03570 peptidyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:maqe03110] D RJ40_05130 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_12730 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_04035 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RJ40_08610 thermosome subunit K22447 cct; archaeal chaperonin D RJ40_08985 thermosome subunit K22447 cct; archaeal chaperonin D RJ40_12735 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RJ40_12725 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D RJ40_04040 co-chaperone GroES K04078 groES; chaperonin GroES D RJ40_04125 pfdA; prefoldin subunit alpha K04797 pfdA; prefoldin alpha subunit D RJ40_10200 prefoldin subunit beta K04798 pfdB; prefoldin beta subunit D RJ40_12760 hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D RJ40_05845 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D RJ40_12510 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D RJ40_05100 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D RJ40_12265 thioredoxin K03671 TXN; thioredoxin D RJ40_00580 trxA; thioredoxin K03671 TXN; thioredoxin D RJ40_00585 thiol reductase thioredoxin K03671 TXN; thioredoxin D RJ40_04210 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:maqe04131] D RJ40_10925 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RJ40_00515 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D RJ40_05455 protein translocase SEC61 complex subunit gamma K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D RJ40_11125 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D RJ40_10985 tuf; translation elongation factor EF-1 subunit alpha K03231 EEF1A; elongation factor 1-alpha C 04121 Ubiquitin system [BR:maqe04121] D RJ40_07130 50S ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D RJ40_07115 30S ribosomal protein S27ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae C 03051 Proteasome [BR:maqe03051] D RJ40_10170 psmA; archaeal proteasome endopeptidase complex subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RJ40_02900 psmB; archaeal proteasome endopeptidase complex subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RJ40_12535 AAA family ATPase K03420 psmR; proteasome regulatory subunit D RJ40_12545 AAA family ATPase K03420 psmR; proteasome regulatory subunit C 03032 DNA replication proteins [BR:maqe03032] D RJ40_05025 ribonuclease HI family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RJ40_02505 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D RJ40_03315 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RJ40_09325 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D RJ40_05215 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RJ40_04605 RNA-protein complex protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D RJ40_12780 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RJ40_07980 ORC1-type DNA replication protein K10725 cdc6A; archaeal cell division control protein 6 D RJ40_10835 ORC1-type DNA replication protein K10725 cdc6A; archaeal cell division control protein 6 D RJ40_03000 minichromosome maintenance protein MCM K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D RJ40_03005 minichromosome maintenance protein MCM K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D RJ40_04580 priS; DNA primase catalytic subunit PriS K02683 priS; DNA primase small subunit [EC:2.7.7.102] D RJ40_02510 priL; DNA primase regulatory subunit PriL K18882 priL; DNA primase large subunit D RJ40_04655 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RJ40_11415 DNA polymerase K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D RJ40_08245 DNA-directed DNA polymerase II large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D RJ40_08075 DNA-directed DNA polymerase II small subunit K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D RJ40_11605 replication factor C large subunit K04800 rfcL; replication factor C large subunit D RJ40_02995 replication factor C small subunit K04801 rfcS; replication factor C small subunit D RJ40_03990 replication protein C K04801 rfcS; replication factor C small subunit D RJ40_03610 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RJ40_03605 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RJ40_10660 DNA topoisomerase IV subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D RJ40_10650 DNA topoisomerase VI subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D RJ40_11325 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:maqe03036] D RJ40_05215 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RJ40_02920 ribonuclease III family protein K03685 rnc; ribonuclease III [EC:3.1.26.3] D RJ40_03290 histone family protein K24450 hmf; DNA-binding protein D RJ40_11620 histone family protein K24450 hmf; DNA-binding protein D RJ40_09480 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D RJ40_09485 segregation/condensation protein A K05896 scpA; segregation and condensation protein A D RJ40_02575 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RJ40_05460 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RJ40_04280 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RJ40_04715 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RJ40_01565 ParA family protein K03496 parA; chromosome partitioning protein C 03400 DNA repair and recombination proteins [BR:maqe03400] D RJ40_11385 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RJ40_11965 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RJ40_11975 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RJ40_09205 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D RJ40_03735 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RJ40_02505 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D RJ40_03315 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RJ40_09325 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D RJ40_11380 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RJ40_11245 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RJ40_05945 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RJ40_04515 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RJ40_10140 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RJ40_12350 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RJ40_12340 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D RJ40_12345 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D RJ40_00820 PD-(D/E)XK nuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RJ40_12130 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RJ40_12135 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D RJ40_04190 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RJ40_04195 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RJ40_05110 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RJ40_05105 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RJ40_05115 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RJ40_10770 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 D RJ40_10765 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RJ40_11485 cas1c; type I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D RJ40_11205 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D RJ40_03275 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA D RJ40_06640 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB D RJ40_07965 ATP-dependent DNA helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D RJ40_03610 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RJ40_03605 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RJ40_11325 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RJ40_02620 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RJ40_09720 polX; DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X) D RJ40_02980 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D RJ40_08855 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D RJ40_05725 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RJ40_09335 hypothetical protein K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:maqe03029] D RJ40_06315 ribonuclease P protein subunit K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D RJ40_10165 ribonuclease P K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D RJ40_10160 ribonuclease P K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D RJ40_09670 GTP-binding protein K03595 era; GTPase D RJ40_07950 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RJ40_04335 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RJ40_03635 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RJ40_06805 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RJ40_11335 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RJ40_11330 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RJ40_11340 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RJ40_05130 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_12730 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_12725 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D RJ40_04035 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RJ40_04040 co-chaperone GroES K04078 groES; chaperonin GroES D RJ40_12735 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RJ40_01015 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_03660 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_09870 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:maqe02000] D RJ40_01505 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D RJ40_01500 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D RJ40_09245 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RJ40_09255 ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D RJ40_09260 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RJ40_03060 wtpA; tungstate ABC transporter substrate-binding protein WtpA K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D RJ40_03400 wtpA; tungstate ABC transporter substrate-binding protein WtpA K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D RJ40_03405 ABC transporter permease subunit K15496 wtpB; molybdate/tungstate transport system permease protein D RJ40_03410 ABC transporter ATP-binding protein K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] D RJ40_09225 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D RJ40_09230 ABC transporter permease subunit K05773 tupB; tungstate transport system permease protein D RJ40_09235 ABC transporter ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D RJ40_11710 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RJ40_11705 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RJ40_12405 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RJ40_12410 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RJ40_12415 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RJ40_12400 proline/glycine betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D RJ40_12395 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D RJ40_12020 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D RJ40_12005 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RJ40_12010 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RJ40_12015 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D RJ40_12235 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D RJ40_12225 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RJ40_02430 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RJ40_09815 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RJ40_09840 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RJ40_09820 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RJ40_09830 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RJ40_09845 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RJ40_09855 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RJ40_09825 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RJ40_09850 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RJ40_01810 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D RJ40_12080 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D RJ40_12090 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D RJ40_12095 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D RJ40_01210 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D RJ40_01205 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D RJ40_01805 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D RJ40_09295 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D RJ40_12115 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D RJ40_01200 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RJ40_01800 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RJ40_03020 ATP-binding cassette domain-containing protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RJ40_09290 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RJ40_12110 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RJ40_06150 iron ABC transporter permease K25027 btuC; cobalamin transport system permease protein D RJ40_06145 heme ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D RJ40_08085 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D RJ40_08095 metal ABC transporter permease K09816 znuB; zinc transport system permease protein D RJ40_08090 metal ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RJ40_04625 energy-coupling factor ABC transporter substrate-binding protein K02009 cbiN; cobalt/nickel transport protein D RJ40_03585 cobalamin biosynthesis protein CbiN K02009 cbiN; cobalt/nickel transport protein D RJ40_04630 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D RJ40_03595 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D RJ40_03580 cbiM; cobalt transporter CbiM K02007 cbiM; cobalt/nickel transport system permease protein D RJ40_04620 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein D RJ40_03590 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RJ40_04635 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RJ40_00650 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D RJ40_09355 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D RJ40_07915 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein D RJ40_07910 ABC transporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein D RJ40_02075 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RJ40_05670 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RJ40_07840 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RJ40_00140 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RJ40_02070 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RJ40_05660 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RJ40_06945 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RJ40_07835 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RJ40_07850 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RJ40_04400 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RJ40_04825 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RJ40_08935 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RJ40_09120 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RJ40_09125 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RJ40_09135 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RJ40_11020 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RJ40_04405 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RJ40_04820 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RJ40_08930 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RJ40_09130 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RJ40_11015 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RJ40_06990 ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D RJ40_07770 SLC13/DASS family transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D RJ40_09960 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RJ40_09980 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RJ40_02215 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RJ40_09420 MFS transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D RJ40_04480 aquaporin family protein K02440 glpF; glycerol uptake facilitator D RJ40_03030 ion transporter K10716 kch; voltage-gated potassium channel D RJ40_04910 ammonium transporter K03320 amt; ammonium transporter, Amt family D RJ40_03145 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D RJ40_10790 formate/nitrite transporter family protein K21993 fdhC; formate transporter D RJ40_12210 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter D RJ40_01310 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter D RJ40_04395 CrcB family protein K06199 crcB; fluoride exporter D RJ40_11465 DUF1211 domain-containing protein K24915 TMEM175; TMEM175 potassium channel family protein D RJ40_09985 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D RJ40_04180 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D RJ40_06715 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D RJ40_02185 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family D RJ40_04485 multidrug efflux SMR transporter K03297 emrE; small multidrug resistance pump D RJ40_02320 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D RJ40_06460 calcium/sodium antiporter K07301 yrbG; cation:H+ antiporter D RJ40_02640 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter D RJ40_08780 potassium transporter KefB K26735 KEA4_5_6; K+:H+ antiporter D RJ40_11270 cation:proton antiporter K26730 napA; Na+:H+ antiporter D RJ40_08205 cation:proton antiporter K26730 napA; Na+:H+ antiporter D RJ40_03195 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D RJ40_04650 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D RJ40_02060 codB; cytosine permease K10974 codB; cytosine permease D RJ40_02170 uracil-xanthine permease K02824 uraA; uracil permease D RJ40_01855 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D RJ40_10795 chloride channel protein K03281 clcA; chloride channel protein, CIC family D RJ40_02050 chloride channel protein K03281 clcA; chloride channel protein, CIC family D RJ40_11925 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D RJ40_06215 AEC family transporter K24180 mleP; malate permease and related proteins D RJ40_07885 VUT family protein K09125 yhhQ; queuosine precursor transporter D RJ40_01885 VUT family protein K09125 yhhQ; queuosine precursor transporter D RJ40_03420 hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein D RJ40_08070 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D RJ40_09730 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D RJ40_03425 tryptophan-rich sensory protein K05770 TSPO; translocator protein C 02044 Secretion system [BR:maqe02044] D RJ40_01670 flagellin K07325 flaB; archaeal flagellin FlaB D RJ40_01645 flagellar accessory protein FlaH K07331 flaH; archaeal flagellar protein FlaH D RJ40_01140 aminoacyl-tRNA hydrolase K07332 flaI; archaeal flagellar protein FlaI D RJ40_01640 secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D RJ40_09050 secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D RJ40_04270 secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D RJ40_01635 flaJ; archaellar assembly protein FlaJ K07333 flaJ; archaeal flagellar protein FlaJ D RJ40_04260 type II secretion system F family protein K07333 flaJ; archaeal flagellar protein FlaJ D RJ40_09055 secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ D RJ40_04320 peptidase A24 K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D RJ40_00605 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RJ40_00610 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RJ40_06240 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RJ40_04115 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RJ40_04120 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RJ40_05455 protein translocase SEC61 complex subunit gamma K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D RJ40_05850 signal recognition particle protein Srp19 K03105 SRP19; signal recognition particle subunit SRP19 C 02042 Bacterial toxins [BR:maqe02042] D RJ40_09985 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D RJ40_04180 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:maqe02022] D RJ40_01610 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RJ40_01620 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RJ40_01615 cheB; chemotaxis-specific protein-glutamate methyltransferase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] C 02035 Bacterial motility proteins [BR:maqe02035] D RJ40_01610 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RJ40_02715 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_07320 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_08035 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_08615 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RJ40_01605 chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D RJ40_01600 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D RJ40_01575 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RJ40_01615 cheB; chemotaxis-specific protein-glutamate methyltransferase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RJ40_01620 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RJ40_01670 flagellin K07325 flaB; archaeal flagellin FlaB D RJ40_01645 flagellar accessory protein FlaH K07331 flaH; archaeal flagellar protein FlaH D RJ40_01140 aminoacyl-tRNA hydrolase K07332 flaI; archaeal flagellar protein FlaI D RJ40_01640 secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D RJ40_09050 secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D RJ40_04270 secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D RJ40_01635 flaJ; archaellar assembly protein FlaJ K07333 flaJ; archaeal flagellar protein FlaJ D RJ40_04260 type II secretion system F family protein K07333 flaJ; archaeal flagellar protein FlaJ D RJ40_09055 secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ D RJ40_04320 peptidase A24 K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:maqe04812] D RJ40_09570 amrB; AmmeMemoRadiSam system protein B K06990 MEMO1; MEMO1 family protein D RJ40_02575 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RJ40_05460 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RJ40_10965 cell division protein K22222 cetZ; tubulin-like protein CetZ D RJ40_04280 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RJ40_04715 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RJ40_01565 ParA family protein K03496 parA; chromosome partitioning protein C 04147 Exosome [BR:maqe04147] D RJ40_01320 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09580 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RJ40_09110 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RJ40_08720 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D RJ40_10985 tuf; translation elongation factor EF-1 subunit alpha K03231 EEF1A; elongation factor 1-alpha D RJ40_06765 elongation factor EF-2 K03234 EEF2; elongation factor 2 D RJ40_04035 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RJ40_05130 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_12730 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RJ40_03315 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RJ40_10535 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RJ40_07115 30S ribosomal protein S27ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D RJ40_01410 cation-transporting P-type ATPase K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha [EC:7.2.2.13] D RJ40_00515 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D RJ40_06655 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RJ40_08450 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RJ40_05895 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RJ40_06235 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RJ40_09400 purine phosphoribosyltransferase family protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RJ40_11735 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RJ40_12870 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RJ40_00530 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RJ40_04940 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RJ40_00085 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RJ40_08850 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D RJ40_09385 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RJ40_12715 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RJ40_09140 NAD(P)/FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RJ40_01465 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RJ40_04990 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RJ40_12555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RJ40_11125 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:maqe02048] D RJ40_11485 cas1c; type I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D RJ40_11205 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D RJ40_11490 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D RJ40_11495 cas3; CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D RJ40_11515 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D RJ40_11510 cas7c; type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2 D RJ40_11500 cas5c; type I-C CRISPR-associated protein Cas5 K19119 cas5d; CRISPR-associated protein Cas5d D RJ40_00930 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D RJ40_00900 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D RJ40_01765 site-specific DNA-methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D RJ40_05215 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RJ40_05225 site-specific DNA-methyltransferase K24451 zim; modification methylase D RJ40_08325 restriction endonuclease K07448 mrr; restriction system protein D RJ40_02575 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RJ40_05460 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RJ40_09540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RJ40_09005 nucleotide-binding protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] D RJ40_01015 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_03660 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RJ40_09870 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:maqe01504] D RJ40_10110 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D RJ40_10105 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:maqe03100] D RJ40_09505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D RJ40_02090 anaerobic sulfatase maturase K24118 atsB; serine-type anaerobic sulfatase-maturating enzyme [EC:1.1.98.7] D RJ40_11535 iorA; indolepyruvate ferredoxin oxidoreductase subunit alpha K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D RJ40_11540 indolepyruvate ferredoxin oxidoreductase subunit beta K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D RJ40_11280 radical SAM protein K24696 mftC; [mycofactocin precursor peptide]-tyrosine decarboxylase / 3-amino-5-[(4-hydroxyphenyl)methyl]-4,4-dimethylpyrrolidin-2-one synthase [EC:1.3.98.7 4.1.99.26] D RJ40_08530 npdG; NADPH-dependent F420 reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D RJ40_08565 npdG; NADPH-dependent F420 reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D RJ40_04510 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D RJ40_09795 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D RJ40_02270 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D RJ40_04465 ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D RJ40_12600 sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D RJ40_06710 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D RJ40_12805 radical SAM protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D RJ40_03750 amrS; AmmeMemoRadiSam system radical SAM enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D RJ40_00460 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D RJ40_01475 radical SAM protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D RJ40_07000 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D RJ40_09745 diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98] D RJ40_01245 methanogenesis marker radical SAM protein K25222 mmp10; [methyl coenzyme M reductase]-L-arginine C-5-methyltransferase [EC:2.1.1.379] D RJ40_08520 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D RJ40_09640 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D RJ40_07435 cysteate synthase K15527 K15527; cysteate synthase [EC:2.5.1.76] D RJ40_10635 larB; nickel pincer cofactor biosynthesis protein LarB K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D RJ40_12595 pseudouridine synthase K07557 tgtA2; archaeosine synthase alpha-subunit [EC:2.6.1.97 2.6.1.-] D RJ40_02600 TIGR01210 family radical SAM protein K06936 raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-] D RJ40_11650 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D RJ40_03325 CDP-alcohol phosphatidyltransferase family protein K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D RJ40_05700 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D RJ40_04700 DUF89 family protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D RJ40_02455 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RJ40_03135 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RJ40_08865 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RJ40_11185 uvsE; UV DNA damage repair endonuclease UvsE K13281 uvsE; UV DNA damage endonuclease [EC:3.-.-.-] D RJ40_10145 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D RJ40_10745 TIGR00268 family protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D RJ40_06645 larC; nickel pincer cofactor biosynthesis protein LarC K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D RJ40_05750 larC; nickel pincer cofactor biosynthesis protein LarC K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D RJ40_12295 peptidylprolyl isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D RJ40_07070 YcaO-related McrA-glycine thioamidation protein K24409 ycaO; thioglycine synthase [EC:6.2.2.1] D RJ40_09010 RNA 3'-terminal phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4] D RJ40_11815 cadA; cadmium-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D RJ40_08220 HAD family hydrolase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D RJ40_00990 cation-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D RJ40_01030 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D RJ40_03250 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D RJ40_03785 ferredoxin K05337 fer; ferredoxin D RJ40_01010 nifU; Fe-S cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins D RJ40_03665 iron-sulfur cluster assembly scaffold protein K04488 iscU; nitrogen fixation protein NifU and related proteins D RJ40_09875 nifU; Fe-S cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins D RJ40_09210 nifB; nitrogenase cofactor biosynthesis protein NifB K02585 nifB; nitrogen fixation protein NifB D RJ40_00225 NADH-quinone oxidoreductase subunit L K14086 echA; ech hydrogenase subunit A D RJ40_00220 NADH-quinone oxidoreductase subunit H K14087 echB; ech hydrogenase subunit B D RJ40_00215 nuoB; NADH-quinone oxidoreductase subunit NuoB K14088 echC; ech hydrogenase subunit C D RJ40_00210 NADH-quinone oxidoreductase subunit C K14089 echD; ech hydrogenase subunit D D RJ40_00205 NADH-quinone oxidoreductase subunit D K14090 echE; ech hydrogenase subunit E D RJ40_00200 4Fe-4S dicluster domain-containing protein K14091 echF; ech hydrogenase subunit F D RJ40_02765 hypothetical protein K14093 ehaB; energy-converting hydrogenase A subunit B D RJ40_02770 DUF2109 domain-containing protein K14094 ehaC; energy-converting hydrogenase A subunit C D RJ40_02775 DUF2108 domain-containing protein K14095 ehaD; energy-converting hydrogenase A subunit D D RJ40_02780 DUF2107 domain-containing protein K14096 ehaE; energy-converting hydrogenase A subunit E D RJ40_02785 DUF2106 domain-containing protein K14097 ehaF; energy-converting hydrogenase A subunit F D RJ40_02790 DUF2105 domain-containing protein K14098 ehaG; energy-converting hydrogenase A subunit G D RJ40_02795 hypothetical protein K14099 ehaH; energy-converting hydrogenase A subunit H D RJ40_02805 NADH-ubiquinone oxidoreductase K14101 ehaJ; energy-converting hydrogenase A subunit J D RJ40_02820 hypothetical protein K14105 ehaN; energy-converting hydrogenase A subunit N D RJ40_02825 hypothetical protein K14106 ehaO; energy-converting hydrogenase A subunit O D RJ40_05305 ACT domain-containing protein K06862 ehbQ; energy-converting hydrogenase B subunit Q D RJ40_09275 uridylate kinase K00947 mosAB; molybdenum storage protein D RJ40_09285 uridylate kinase K00947 mosAB; molybdenum storage protein C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism D RJ40_09755 flippase-like domain-containing protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D RJ40_05280 AarF/ABC1/UbiB kinase family protein K03688 ubiB; ubiquinone biosynthesis protein C 99988 Secondary metabolism D RJ40_08445 Zn-ribbon domain-containing OB-fold protein K07068 DUF35; scaffold protein (connect acetoacetyl-CoA thiolase and HMG-CoA synthase) C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D RJ40_12550 TIGR00270 family protein K03627 MBF1; putative transcription factor D RJ40_02555 albA; DNA-binding protein Alba K03622 ssh10b; archaea-specific DNA-binding protein D RJ40_08815 RNA-binding protein K04796 RUXX; small nuclear ribonucleoprotein D RJ40_12360 S1 RNA-binding domain-containing protein K06959 tex; protein Tex D RJ40_09150 DUF128 domain-containing protein K21640 nrpRII; global nitrogen regulator NrpRII D RJ40_03295 CBS domain-containing protein K07744 K07744; transcriptional regulator C 99974 Translation D RJ40_04090 DUF655 domain-containing protein K07572 K07572; putative nucleotide binding protein D RJ40_09415 methyltransferase domain-containing protein K07579 K07579; putative methylase D RJ40_07745 DUF1610 domain-containing protein K07580 K07580; Zn-ribbon RNA-binding protein D RJ40_04150 alpha hydrolase K07585 K07585; tRNA methyltransferase C 99975 Protein processing D RJ40_12755 HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC D RJ40_01705 hypD; hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D RJ40_12765 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D RJ40_05410 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF D RJ40_03980 hypothetical protein K07388 K07388; hydrogenase expression/formation protein D RJ40_10135 pseudouridine synthase K07398 K07398; conserved protein with predicted RNA binding PUA domain C 99976 Replication and repair D RJ40_08750 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D RJ40_00575 Fe-S cluster assembly protein HesB K07457 K07457; endonuclease III related protein D RJ40_00430 S1 RNA-binding domain-containing protein K07463 K07463; archaea-specific RecJ-like exonuclease D RJ40_12195 transposase K07496 K07496; putative transposase D RJ40_12880 transposase K07496 K07496; putative transposase C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D RJ40_03730 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D RJ40_11425 hypothetical protein K03307 TC.SSS; solute:Na+ symporter, SSS family D RJ40_07890 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D RJ40_09835 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D RJ40_12745 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family C 99978 Cell growth D RJ40_01345 adenylyl-sulfate kinase K07321 cooC; CO dehydrogenase maturation factor D RJ40_04805 carbon monoxide dehydrogenase K07321 cooC; CO dehydrogenase maturation factor D RJ40_04545 stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M C 99993 Cell motility D RJ40_01625 hypothetical protein K09156 cheF; taxis protein CheF C 99995 Signaling proteins D RJ40_02015 ACT domain-containing protein K07166 K07166; ACT domain-containing protein D RJ40_04155 DNA-binding protein K06875 PDCD5; programmed cell death protein 5 C 99992 Structural proteins D RJ40_06420 PGF-CTERM sorting domain-containing protein K26284 csg; S-layer glycoprotein C 99994 Others D RJ40_12220 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein D RJ40_01460 divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein D RJ40_05480 molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] B B 09194 Poorly characterized C 99996 General function prediction only D RJ40_04330 ATPase K06865 K06865; ATPase D RJ40_01785 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D RJ40_06995 SufD family Fe-S cluster assembly protein K09014 sufB; Fe-S cluster assembly protein SufB D RJ40_04025 hydrolase TatD K07049 K07049; TatD-related deoxyribonuclease D RJ40_03625 hypothetical protein K07143 K07143; UPF0148 protein D RJ40_06180 LemA family protein K03744 lemA; LemA protein D RJ40_02565 DUF373 family protein K08975 K08975; putative membrane protein D RJ40_11780 DUF2070 family protein K08979 K08979; putative membrane protein D RJ40_03705 hypothetical protein K08981 K08981; putative membrane protein C 99997 Function unknown D RJ40_04350 proteasome assembly chaperone family protein K06869 K06869; uncharacterized protein D RJ40_01860 TIGR04083 family peptide-modifying radical SAM enzyme K06871 K06871; uncharacterized protein D RJ40_06730 HD domain-containing protein K06885 K06885; uncharacterized protein D RJ40_01850 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein D RJ40_07185 alpha/beta hydrolase K06889 K06889; uncharacterized protein D RJ40_00295 ATP-grasp domain-containing protein K06913 K06913; uncharacterized protein D RJ40_07640 DUF134 domain-containing protein K06933 K06933; uncharacterized protein D RJ40_11045 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein D RJ40_00410 GTP-binding protein K06945 K06945; uncharacterized protein D RJ40_09740 GTP-binding protein K06945 K06945; uncharacterized protein D RJ40_08770 HD domain-containing protein K06950 K06950; uncharacterized protein D RJ40_00305 HDIG domain-containing protein K06950 K06950; uncharacterized protein D RJ40_02985 phosphoesterase K06953 K06953; uncharacterized protein D RJ40_06500 VOC family protein K06996 K06996; uncharacterized protein D RJ40_02960 RND family transporter K07003 K07003; uncharacterized protein D RJ40_05805 RND family transporter K07003 K07003; uncharacterized protein D RJ40_11990 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein D RJ40_12860 pyridoxamine 5-phosphate oxidase K07006 K07006; uncharacterized protein D RJ40_12865 pyridoxamine 5-phosphate oxidase K07006 K07006; uncharacterized protein D RJ40_02905 beta-CASP ribonuclease aCPSF1 K07041 K07041; uncharacterized protein D RJ40_05955 nucleotidyltransferase K07075 K07075; uncharacterized protein D RJ40_06855 DNA polymerase III subunit beta K07075 K07075; uncharacterized protein D RJ40_08335 nucleotidyltransferase K07075 K07075; uncharacterized protein D RJ40_10220 nucleotidyltransferase K07075 K07075; uncharacterized protein D RJ40_10420 nucleotidyltransferase K07075 K07075; uncharacterized protein D RJ40_05165 hypothetical protein K07075 K07075; uncharacterized protein D RJ40_05340 aldo/keto reductase K07079 K07079; uncharacterized protein D RJ40_05740 aldo/keto reductase K07079 K07079; uncharacterized protein D RJ40_06680 permease K07089 K07089; uncharacterized protein D RJ40_06685 permease K07089 K07089; uncharacterized protein D RJ40_03230 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RJ40_01870 sulfur reduction protein DsrE K07092 K07092; uncharacterized protein D RJ40_09865 sulfur reduction protein DsrE K07092 K07092; uncharacterized protein D RJ40_09810 metallophosphoesterase K07095 K07095; uncharacterized protein D RJ40_12520 metallophosphoesterase K07096 K07096; uncharacterized protein D RJ40_04380 phosphoesterase K07097 K07097; uncharacterized protein D RJ40_05925 metallophosphoesterase K07098 K07098; uncharacterized protein D RJ40_09200 metallophosphoesterase K07098 K07098; uncharacterized protein D RJ40_05140 phosphoribosyltransferase K07101 K07101; uncharacterized protein D RJ40_00310 regulator of amino acid metabolism, contains ACT domain protein K07103 K07103; uncharacterized protein D RJ40_01020 transcriptional regulator K07108 K07108; uncharacterized protein D RJ40_01550 YeeE/YedE family protein K07112 K07112; uncharacterized protein D RJ40_01555 hypothetical protein K07112 K07112; uncharacterized protein D RJ40_11610 methanogenesis marker 2 protein K07123 K07123; uncharacterized protein D RJ40_09705 radical SAM protein K07129 K07129; uncharacterized protein D RJ40_04295 dynein regulation protein LC7 K07131 K07131; uncharacterized protein D RJ40_02945 hypothetical protein K07131 K07131; uncharacterized protein D RJ40_04490 DUF362 domain-containing protein K07138 K07138; uncharacterized protein D RJ40_07090 nucleotide-binding protein K07158 K07158; uncharacterized protein D RJ40_04610 proteasome assembly chaperone family protein K07159 K07159; uncharacterized protein D RJ40_09680 hypothetical protein K07163 K07163; uncharacterized protein D RJ40_09760 bifunctional nuclease family protein K08999 K08999; uncharacterized protein D RJ40_05835 hypothetical protein K09004 K09004; uncharacterized protein D RJ40_00560 DUF99 family protein K09120 K09120; uncharacterized protein D RJ40_10590 hypothetical protein K09126 K09126; uncharacterized protein D RJ40_12775 YggU family protein K09131 K09131; uncharacterized protein D RJ40_04355 DUF473 domain-containing protein K09135 K09135; uncharacterized protein D RJ40_01315 DUF190 domain-containing protein K09137 K09137; uncharacterized protein D RJ40_12585 TIGR00296 family protein K09141 K09141; uncharacterized protein D RJ40_04020 DUF424 family protein K09148 K09148; uncharacterized protein D RJ40_08225 DUF432 domain-containing protein K09149 K09149; uncharacterized protein D RJ40_09185 DUF460 domain-containing protein K09150 K09150; uncharacterized protein D RJ40_08825 DUF552 domain-containing protein K09152 K09152; uncharacterized protein D RJ40_03925 DUF447 family protein K09154 K09154; uncharacterized protein D RJ40_02010 PFL family protein K09157 K09157; uncharacterized protein D RJ40_03710 hypothetical protein K09167 K09167; uncharacterized protein D RJ40_11600 hypothetical protein K09713 K09713; uncharacterized protein D RJ40_02325 DUF504 domain-containing protein K09715 K09715; uncharacterized protein D RJ40_05295 DNA polymerase subunit beta K09717 K09717; uncharacterized protein D RJ40_03620 UPF0147 family protein K09721 K09721; uncharacterized protein D RJ40_10260 DUF354 domain-containing protein K09726 K09726; uncharacterized protein D RJ40_10035 DUF116 domain-containing protein K09729 K09729; uncharacterized protein D RJ40_04560 UPF0179 family protein K09730 K09730; uncharacterized protein D RJ40_11765 DUF555 domain-containing protein K09731 K09731; uncharacterized protein D RJ40_04200 DUF371 domain-containing protein K09738 K09738; uncharacterized protein D RJ40_00270 UPF0280 family protein K09740 K09740; uncharacterized protein D RJ40_09675 DUF2073 domain-containing protein K09743 K09743; uncharacterized protein D RJ40_08480 nucleic acid-binding protein K09746 K09746; uncharacterized protein D RJ40_02990 hypothetical protein K09746 K09746; uncharacterized protein D RJ40_09780 DUF541 domain-containing protein K09807 K09807; uncharacterized protein D RJ40_11445 DUF2156 domain-containing protein K01163 K01163; uncharacterized protein D RJ40_03725 DUF47 family protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: October 30, 2024