+E	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Marinobacter sp. Arc7-DN-1</h2>
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A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
D      D0851_07705 DNA cytosine methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
E        Line #4
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    GRAS
C    Copper-fist proteins fungal regulators
C    Others
#
A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
D      D0851_18160 AraC family transcriptional regulator	K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein 
D      D0851_07025 AraC family transcriptional regulator	K07506 K07506; AraC family transcriptional regulator 
D      D0851_09825 methylated-DNA--[protein]-cysteine S-methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] 
D      D0851_07150 GlxA family transcriptional regulator	K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator 
C    LysR family
D      D0851_12995 LysR family transcriptional regulator	K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator 
D      D0851_16085 LysR family transcriptional regulator	K03576 metR; LysR family transcriptional regulator, regulator for metE and metH 
D      D0851_01090 LysR family transcriptional regulator	K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA 
D      D0851_01445 LysR family transcriptional regulator	K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA 
D      D0851_15230 hydrogen peroxide-inducible genes activator	K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator 
D      D0851_18020 LysR family transcriptional regulator ArgP	K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor 
D      D0851_02765 cysB; HTH-type transcriptional regulator CysB	K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator 
C    DeoR family
D      D0851_04010 DeoR/GlpR family transcriptional regulator	K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor 
C    LacI family
D      D0851_08805 LacI family transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      D0851_09950 LacI family DNA-binding transcriptional regulator	K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 
C    GntR family
D      D0851_14250 FCD domain-containing protein	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
D      D0851_09150 FCD domain-containing protein	K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator 
D      D0851_12855 PLP-dependent aminotransferase family protein	K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase 
C    TetR/AcrR family
D      D0851_09820 TetR family transcriptional regulator	K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor 
D      D0851_10380 slmA; nucleoid occlusion factor SlmA	K05501 slmA; TetR/AcrR family transcriptional regulator 
D      D0851_14110 TetR family transcriptional regulator	K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon 
D      D0851_03460 fabR; HTH-type transcriptional repressor FabR	K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator 
D      D0851_08040 TetR family transcriptional regulator	K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator 
D      D0851_06220 TetR/AcrR family transcriptional regulator	K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
C    Lrp/AsnC family
D      D0851_07570 winged helix-turn-helix transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      D0851_06845 winged helix-turn-helix transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      D0851_03570 Lrp/AsnC family transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
C    LuxR family
D      D0851_05690 helix-turn-helix transcriptional regulator	K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein 
C    MarR family
D      D0851_12010 MarR family transcriptional regulator	K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin 
D      D0851_03750 MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
C    MerR family
D      D0851_11820 merR; Hg(II)-responsive transcriptional regulator	K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein 
D      D0851_11850 merR; Hg(II)-responsive transcriptional regulator	K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein 
D      D0851_16950 merR; Hg(II)-responsive transcriptional regulator	K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein 
D      D0851_11795 MerR family transcriptional regulator	K19591 cueR; MerR family transcriptional regulator, copper efflux regulator 
D      D0851_13145 MerR family transcriptional regulator	K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA 
C    Fur family
D      D0851_09425 ferric iron uptake transcriptional regulator	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      D0851_13200 transcriptional repressor	K09823 zur; Fur family transcriptional regulator, zinc uptake regulator 
C    IclR family
C    CRP/FNR family
D      D0851_10540 cAMP-activated global transcriptional regulator CRP	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
D      D0851_17220 fumarate/nitrate reduction transcriptional regulator Fnr	K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein 
D      D0851_08125 Crp/Fnr family transcriptional regulator	K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator 
C    Rrf2 family
D      D0851_00780 iscR; Fe-S cluster assembly transcriptional regulator IscR	K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor 
D      D0851_08060 Rrf2 family transcriptional regulator	K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor 
C    ArsR family
D      D0851_10980 ArsR family transcriptional regulator	K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] 
D      D0851_08545 transcriptional regulator	K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator 
C    XRE family
C    PadR family
C    Other families
D      D0851_04070 MurR/RpiR family transcriptional regulator	K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator 
D      D0851_15535 biotin--[acetyl-CoA-carboxylase] ligase	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      D0851_14500 hypothetical protein	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      D0851_10150 DNA-binding transcriptional regulator Fis	K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein 
D      D0851_05500 helix-turn-helix domain-containing protein	K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB 
D      D0851_03515 transcriptional regulator	K18831 higA; HTH-type transcriptional regulator / antitoxin HigA 
D      D0851_07590 transcriptional regulator	K18831 higA; HTH-type transcriptional regulator / antitoxin HigA 
D      D0851_09070 ImmA/IrrE family metallo-endopeptidase	K18831 higA; HTH-type transcriptional regulator / antitoxin HigA 
D      D0851_04910 sigma-54-dependent Fis family transcriptional regulator	K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein 
D      D0851_04000 sigma-54-dependent Fis family transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      D0851_13470 sigma-54-dependent Fis family transcriptional regulator	K11908 vasH; sigma-54 dependent transcriptional regulator 
D      D0851_08260 norR; nitric oxide reductase transcriptional regulator NorR	K12266 norR; anaerobic nitric oxide reductase transcription regulator 
D      D0851_18515 PAS domain S-box protein	K15836 fhlA; formate hydrogenlyase transcriptional activator 
D      D0851_06665 helix-turn-helix domain-containing protein	K07726 K07726; putative transcriptional regulator 
D      D0851_11390 helix-turn-helix domain-containing protein	K07726 K07726; putative transcriptional regulator 
D      D0851_14610 DNA-binding transcriptional regulator	K07726 K07726; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
C    Other families
D      D0851_06835 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] 
B  Other transcription factors
C    BglG family
C    Others
D      D0851_08110 regulatory protein NosR	K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator 
D      D0851_11945 4Fe-4S binding protein	K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator 
D      D0851_19365 BolA family transcriptional regulator	K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator 
D      D0851_12610 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      D0851_05480 rfaH; transcription/translation regulatory transformer protein RfaH	K05785 rfaH; transcriptional antiterminator RfaH 
D      D0851_06935 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX	K02616 paaX; phenylacetic acid degradation operon negative regulatory protein 
D      D0851_13265 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] 
D      D0851_09480 AlpA family transcriptional regulator	K07733 alpA; prophage regulatory protein 
D      D0851_13255 YqgE/AlgH family protein	K07735 algH; putative transcriptional regulator 
D      D0851_15390 dksA; RNA polymerase-binding protein DksA	K06204 dksA; RNA polymerase-binding transcription factor 
D      D0851_03920 TraR/DksA family transcriptional regulator	K06204 dksA; RNA polymerase-binding transcription factor 
D      D0851_16240 nrdR; transcriptional regulator NrdR	K07738 nrdR; transcriptional repressor NrdR 
D      D0851_16590 mraZ; transcriptional regulator MraZ	K03925 mraZ; transcriptional regulator MraZ 
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#<hr>
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#Last updated: August 29, 2024
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>