+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Massilia sp. WG5

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D AM586_09185 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C AM586_18880 GTPase Era K03595 era; GTPase C AM586_06395 obgE; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C AM586_09740 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor C AM586_02140 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C AM586_18435 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor C AM586_06705 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA C AM586_09425 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C AM586_02375 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D AM586_22540 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D AM586_25940 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D AM586_04870 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D AM586_22865 SAM-dependent methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D AM586_01105 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D AM586_06595 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D AM586_01210 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D AM586_05735 ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D AM586_00830 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D AM586_18980 SAM-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D AM586_11070 23S rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D AM586_10760 rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D AM586_23610 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D AM586_15385 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D AM586_25855 DNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D AM586_19180 rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D AM586_20500 23S rRNA (adenine(2503)-C2)-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D AM586_20530 23S rRNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D AM586_04780 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D AM586_06695 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D AM586_22565 RNA pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D AM586_13285 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D AM586_08850 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D AM586_20140 RNA-binding protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D AM586_17095 pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C AM586_10655 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C AM586_07725 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C AM586_13310 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C AM586_16670 protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C AM586_24420 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C AM586_19435 ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C AM586_21420 cupin K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C AM586_22570 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C AM586_23620 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C AM586_24290 crossover junction endodeoxyribonuclease RuvA K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C AM586_19080 ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C AM586_23345 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C AM586_18880 GTPase Era K03595 era; GTPase C AM586_09170 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C AM586_20465 ribosome biogenesis GTPase Der K03977 engA; GTPase C AM586_06395 obgE; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] C AM586_08385 ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A B Other maturation factors C AM586_25270 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C AM586_22165 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C AM586_06715 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C AM586_06700 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C AM586_07890 RNA-binding protein K14761 rlbA; ribosome-associated protein C AM586_23605 iojap family protein K09710 ybeB; ribosome-associated protein C AM586_24185 rRNA maturation factor K07042 ybeY; probable rRNA maturation factor C AM586_10755 RNA-binding protein K07574 yhbY; RNA-binding protein C AM586_24845 hypothetical protein K09889 yjgA; ribosome-associated protein C AM586_03545 RNA polymerase subunit sigma-54 K05808 hpf; ribosome hibernation promoting factor C AM586_03060 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase C AM586_18970 DNA-binding protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024