+F Repair protein KO
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DNA Repair and Recombination Proteins - Drepanopeziza brunnea
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MBM_03939 photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MBM_03874 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E MBM_03404 uracil DNA glycosylase superfamily protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E MBM_01416 N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E MBM_00473 HhH-GPD superfamily base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E MBM_01289 apurinic endonuclease K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E MBM_00652 DNA lyase K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F MBM_06338 DNA polymerase family B K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F MBM_07772 DNA polymerase alpha/epsilon subunit B K02328 POLD2; DNA polymerase delta subunit 2
F MBM_00797 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F MBM_07400 DNA polymerase delta K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F MBM_04038 DNA polymerase epsilon K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F MBM_07977 DNA polymerase alpha/epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F MBM_05853 CBF/NF-Y family transcription factor K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F MBM_00842 Histone-like transcription factor and archaeal histone family protein K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E MBM_02591 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E MBM_02975 DNA-repair protein rad2 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E MBM_04476 putative DNA ligase (Polydeoxyribonucleotide synthase) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E MBM_02879 tyrosyl-DNA phosphodiesterase K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E MBM_01023 HIT domain-containing protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E MBM_08017 polynucleotide kinase 3 phosphatase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E MBM_03692 poly polymerase 2 ADP-ribosyltransferase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F MBM_03304 Rad4 family protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F MBM_09571 nitrilase K10838 XPC; xeroderma pigmentosum group C-complementing protein
F MBM_01954 nucleotide excision repair protein RAD23 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F MBM_08230 ring-box 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F MBM_07035 ubiquitin ligase subunit CulD K10609 CUL4; cullin 4
F MBM_03262 CPSF A subunit region K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F MBM_08552 DNA repair protein Rad7, protein K15082 RAD7; DNA repair protein RAD7
F MBM_08551 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F MBM_03515 DNA-directed RNA polymerase 2 largest subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F MBM_04681 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F MBM_09032 RNA polymerase II subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F MBM_00072 RNA polymerase Rpb4 family protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F MBM_01719 RNA polymerase subunit K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F MBM_09927 DNA-directed RNA polymerases I, II, and III K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F MBM_02331 RNA polymerase Rpb7-like domain-containing protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F MBM_06705 RNA polymerase Rpb8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F MBM_09129 DNA-directed RNA polymerase II subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F MBM_03528 DNA-directed RNA polymerase N/8 kDa subunit K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F MBM_07778 DNA-directed RNA polymerase II K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F MBM_05787 putative transcription activator K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F MBM_08230 ring-box 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F MBM_07035 ubiquitin ligase subunit CulD K10609 CUL4; cullin 4
F MBM_03262 CPSF A subunit region K10610 DDB1; DNA damage-binding protein 1
F MBM_05014 WD repeat protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F MBM_03649 DNA repair protein rhp26 K10841 ERCC6; DNA excision repair protein ERCC-6
F MBM_03764 transcription elongation factor K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E MBM_06949 DNA repair helicase rad25 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E MBM_09579 tfiih complex helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E MBM_04114 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E MBM_05585 RNA polymerase TFIIH complex subunit Ssl1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E MBM_05205 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E MBM_05998 tfiih and nucleotide excision repair factor 3 complexes subunit K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E MBM_04571 transcription factor TFIIH complex subunit Tfb5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E MBM_07814 serine/threonine-protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E MBM_01224 hypothetical protein K06634 CCNH; cyclin H
E MBM_00898 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E MBM_08070 replication factor-a protein 1 K07466 RFA1; replication factor A1
E MBM_03283 putative replication protein A 32 kDa subunit K10739 RFA2; replication factor A2
E MBM_02790 DNA replication factor A subunit Ssb3 K10740 RPA3; replication factor A3
D Other NER factors
E MBM_09466 DNA repair protein rad14 K10847 XPA; DNA-repair protein complementing XP-A cells
E MBM_06048 DNA repair protein rad10 K10849 ERCC1; DNA excision repair protein ERCC-1
E MBM_07311 MUS38-like protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E MBM_04740 DNA excision repair protein K10846 ERCC5; DNA excision repair protein ERCC-5
E MBM_04476 putative DNA ligase (Polydeoxyribonucleotide synthase) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E MBM_04384 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E MBM_01297 Cullin family protein K03869 CUL3; cullin 3
E MBM_07402 Skp1 family protein K03872 ELOC; elongin-C
E MBM_01333 RNA polymerase II transcription factor SIII subunit A K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E MBM_06832 MutS domain V K08735 MSH2; DNA mismatch repair protein MSH2
E MBM_04892 putative DNA mismatch repair protein msh3 K08736 MSH3; DNA mismatch repair protein MSH3
E MBM_04714 DNA mismatch repair protein Msh6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E MBM_00784 MutL-like protein K08734 MLH1; DNA mismatch repair protein MLH1
E MBM_04151 DNA mismatch repair protein MutL K10858 PMS2; DNA mismatch repair protein PMS2
E MBM_04938 DNA mismatch repair protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E MBM_06338 DNA polymerase family B K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E MBM_07772 DNA polymerase alpha/epsilon subunit B K02328 POLD2; DNA polymerase delta subunit 2
E MBM_00797 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E MBM_07400 DNA polymerase delta K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E MBM_08070 replication factor-a protein 1 K07466 RFA1; replication factor A1
E MBM_03283 putative replication protein A 32 kDa subunit K10739 RFA2; replication factor A2
E MBM_02790 DNA replication factor A subunit Ssb3 K10740 RPA3; replication factor A3
D RFC (replication factor C)
E MBM_04569 hypothetical protein K10754 RFC1; replication factor C subunit 1
E MBM_07105 replication factor C K10755 RFC2_4; replication factor C subunit 2/4
E MBM_02505 activator 1 41 kDa subunit K10755 RFC2_4; replication factor C subunit 2/4
E MBM_05471 activator 1 subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E MBM_09041 clamp-loader complex subunit E K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E MBM_02591 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E MBM_06776 putative exonuclease K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E MBM_04476 putative DNA ligase (Polydeoxyribonucleotide synthase) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E MBM_03039 WD repeat containing protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E MBM_05215 DNA repair protein K10865 MRE11; double-strand break repair protein MRE11
E MBM_03862 DNA repair protein rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E MBM_05215 DNA repair protein K10865 MRE11; double-strand break repair protein MRE11
E MBM_03862 DNA repair protein rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E MBM_05838 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E MBM_05838 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E MBM_02266 DNA repair protein RAD57 K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E MBM_04950 putative DNA repair and recombination protein rhm52 K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E MBM_06815 SNF2 family domain-containing protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E MBM_01215 DNA repair and recombination protein RAD26 K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E MBM_02511 QDE3-like protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E MBM_02511 QDE3-like protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E MBM_02132 DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E MBM_03014 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E MBM_08070 replication factor-a protein 1 K07466 RFA1; replication factor A1
E MBM_03283 putative replication protein A 32 kDa subunit K10739 RFA2; replication factor A2
E MBM_02790 DNA replication factor A subunit Ssb3 K10740 RPA3; replication factor A3
D Protein phosphatase 4
E MBM_00625 suppressor of Mek1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E MBM_07325 structural maintenance of chromosomes 5 smc5 K22803 SMC5; structural maintenance of chromosomes protein 5
E MBM_06857 DNA repair protein K22804 SMC6; structural maintenance of chromosomes protein 6
E MBM_00566 RING-like domain-containing protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E MBM_06498 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E MBM_07535 nuclear protein Qri2/Nse4 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E MBM_06402 ERCC4 domain-containing protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E MBM_08568 ERCC4 domain-containing protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E MBM_09745 DNA repair protein Dds20/Mei5 K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E MBM_08532 GIY-YIG catalytic domain-containing protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E MBM_07656 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E MBM_03029 AAA family ATPase K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E MBM_03964 zinc ion binding protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E MBM_02404 putative ATP-dependent DNA helicase mph1 K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E MBM_07847 putative ATP-dependent DNA helicase II subunit 1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E MBM_08852 putative ATP-dependent DNA helicase II subunit 2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E MBM_05215 DNA repair protein K10865 MRE11; double-strand break repair protein MRE11
E MBM_03862 DNA repair protein rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E MBM_01068 DNA ligase K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E MBM_00391 DNA polymerase beta K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E MBM_01023 HIT domain-containing protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E MBM_09735 artemis protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E MBM_05656 apoptosis-inducing TAF9-like domain 1 family protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E MBM_02511 QDE3-like protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E MBM_02132 DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E MBM_03014 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E MBM_01412 coiled-coil domain-containing protein MTMR15 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E MBM_05838 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E MBM_02448 telomere length regulation protein K11137 TELO2; telomere length regulation protein
E MBM_09590 WD domain-containing protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E MBM_03243 WD repeat-containing protein K23314 WRAP53; telomerase Cajal body protein 1
E MBM_01192 WD domain-containing protein K24752 WDR70; WD repeat-containing protein 70
E MBM_03039 WD repeat containing protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D MBM_07554 impB/mucB/samB family protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D MBM_04600 DNA polymerase iota K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D MBM_09134 impB/mucB/samB family protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D MBM_06152 impB/mucB/samB family protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D MBM_00648 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D MBM_01633 ubiquitin-conjugating enzyme E2-17 kDa K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D MBM_00796 hypothetical protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D MBM_01936 SNF2 family domain-containing protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D MBM_02006 SNF2 family domain-containing protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D MBM_05986 ubiquitin-conjugating enzyme K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D MBM_06493 ubiquitin-conjugating enzyme E2 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D MBM_02591 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D MBM_07425 sprT family metallopeptidase K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D MBM_07044 DNA repair protein rad9 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D MBM_05731 Hus1-like protein K10903 HUS1; HUS1 checkpoint protein
D MBM_09742 repair protein Rad1/Rec1/Rad17 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D MBM_05526 Rad17 cell cycle checkpoint protein K06662 HRAD17; cell cycle checkpoint protein
D MBM_07105 replication factor C K10755 RFC2_4; replication factor C subunit 2/4
D MBM_02505 activator 1 41 kDa subunit K10755 RFC2_4; replication factor C subunit 2/4
D MBM_05471 activator 1 subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D MBM_09041 clamp-loader complex subunit E K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D MBM_09742 repair protein Rad1/Rec1/Rad17 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D MBM_08282 timeless protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D MBM_07576 replication fork protection component Swi3 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D MBM_08907 MRC1-like domain-containing protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D MBM_02448 telomere length regulation protein K11137 TELO2; telomere length regulation protein
D MBM_00374 HEAT repeat protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D MBM_05625 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D MBM_07100 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D MBM_07507 phosphatidylinositol 3 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D MBM_07033 phosphatidylinositol 3 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D MBM_03411 MUS-58 protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D MBM_06218 hypothetical protein K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D MBM_01344 rhodanese-like domain-containing protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D MBM_02600 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D MBM_04821 14-3-3 protein K06630 YWHAE; 14-3-3 protein epsilon
D MBM_07991 protein kinase K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D MBM_08822 fork head domain-containing protein K24664 FKH; forkhead protein FKH
D MBM_06758 vacuolar protein sorting-associated protein VPS4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D MBM_09046 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D MBM_01281 DNA polymerase V family protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D MBM_02248 DNA cross-link repair protein pso2/snm1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D MBM_02906 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D MBM_00816 nuclease s1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D MBM_08151 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D MBM_07173 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D MBM_01798 ubiquitin-protein ligase E4 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D MBM_00810 myb-like DNA-binding domain-containing protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D MBM_05063 BCAS2 family protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D MBM_06015 pre-mRNA splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D MBM_02589 putative dUTPase (Dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MBM_00770 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MBM_05003 ribonucleotide reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D MBM_01126 ribonucleotide reductase small subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MBM_03939 photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MBM_03874 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E MBM_05093 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E MBM_00473 HhH-GPD superfamily base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E MBM_05865 ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E MBM_05865 ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D MBM_02589 putative dUTPase (Dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MBM_00770 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024