+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanococcoides burtonii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Mbur_2220 Methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Mbur_2305 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Mbur_1131 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E Mbur_2164 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E Mbur_1101 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E Mbur_2193 archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E Mbur_1913 FEN1 flap endonuclease with 5'-3' exonuclease activity K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E Mbur_1088 dnl1; DNA ligase 1, ATP-dependent K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Mbur_1566 DEAD/DEAH box helicase domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E Mbur_1764 Single-stranded DNA-binding protein K07466 RFA1; replication factor A1 D Other NER factors E Mbur_1088 dnl1; DNA ligase 1, ATP-dependent K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E Mbur_1764 Single-stranded DNA-binding protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E Mbur_2193 archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E Mbur_1088 dnl1; DNA ligase 1, ATP-dependent K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E Mbur_1764 Single-stranded DNA-binding protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D Mbur_2193 archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Mbur_2195 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Mbur_0910 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Mbur_2220 Methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Mbur_2305 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Mbur_2338 Uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Mbur_0590 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Mbur_1441 DNA-3-methyladenine glycosylase I family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Mbur_2164 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E Mbur_1101 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Mbur_2145 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Mbur_2015 TIM alpha/beta barrel protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E Mbur_1505 Single stranded DNA specific Exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Mbur_2340 Single-stranded DNA-specific exonuclease RecJ-like phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Mbur_1158 Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E Mbur_2303 Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Mbur_1467 Excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Mbur_0754 DNA helicase, ATP dependent K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Mbur_1704 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Mbur_1334 MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Mbur_1703 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Mbur_1515 Exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Mbur_1514 Exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E Mbur_0754 DNA helicase, ATP dependent K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Mbur_1534 DNA mismatch (G:T) repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Mbur_1501 DNA-binding Structural Maintenance of Chromosomes Protein with ATPase domain K03546 sbcC; DNA repair protein SbcC/Rad50 E Mbur_1502 metallophosphoesterase domain protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Mbur_0507 Divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Mbur_0482 Divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Mbur_1505 Single stranded DNA specific Exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Mbur_2340 Single-stranded DNA-specific exonuclease RecJ-like phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E Mbur_1127 CRISPR-associated protein Cas1 containing DUF48 domain K15342 cas1; CRISP-associated protein Cas1 E Mbur_0582 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1 E Mbur_0599 Protein of unknown function DUF48, CRISPR-associated K15342 cas1; CRISP-associated protein Cas1 E Mbur_0560 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1 E Mbur_0573 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Mbur_2033 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E Mbur_2123 DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E Mbur_1501 DNA-binding Structural Maintenance of Chromosomes Protein with ATPase domain K03546 sbcC; DNA repair protein SbcC/Rad50 E Mbur_1502 metallophosphoesterase domain protein K03547 sbcD; DNA repair protein SbcD/Mre11 E Mbur_1102 DEAD/DEAH box helicase-like protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Mbur_0420 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Mbur_0419 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Mbur_0705 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F Mbur_0095 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Mbur_1505 Single stranded DNA specific Exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Mbur_2340 Single-stranded DNA-specific exonuclease RecJ-like phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F Mbur_0061 ATP dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Mbur_1158 Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F Mbur_2303 Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Mbur_2166 UmuC like DNA polymerase K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] D Mbur_0144 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Mbur_0732 DEAD/DEAH box helicase-like protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Mbur_2195 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Mbur_0910 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D Mbur_2047 protein of unknown function with DUF650 and DUF651 domains K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024