+E Transcription factors KO #

  Transcription Factors - Methyloceanibacter caenitepidi

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D GL4_1195 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D GL4_0827 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D GL4_2684 glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D GL4_2040 hydrogen peroxide-inducible genes activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D GL4_2528 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D GL4_2348 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D GL4_1134 LysR family transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family C LacI family C GntR family D GL4_1129 transcriptional regulator, GntR family domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D GL4_2955 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D GL4_0545 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D GL4_3185 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon C Lrp/AsnC family D GL4_2786 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D GL4_2519 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D GL4_0846 transcriptional regulatory protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 C MarR family C MerR family C Fur family D GL4_0490 manganese uptake regulation protein MUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D GL4_0035 zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D GL4_0695 iron-responsive regulator Irr K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family C CRP/FNR family D GL4_0195 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D GL4_3072 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D GL4_2764 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D GL4_1877 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D GL4_1281 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D GL4_1564 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D GL4_1301 transcriptional regulatory protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein D GL4_1124 nitric oxide -responding transcriptional regulator NnrR K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator C Rrf2 family D GL4_2980 nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D GL4_1133 nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D GL4_1147 nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D GL4_2533 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D GL4_3284 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D GL4_1967 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family D GL4_1511 hypothetical protein K10947 K10947; PadR family transcriptional regulator C Other families D GL4_2082 biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D GL4_1172 hypothetical protein K02019 modE; molybdate transport system regulatory protein D GL4_0480 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D GL4_2240 proline dehydrogenase (proline oxidase) K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D GL4_3296 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D GL4_0331 chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D GL4_3308 CarD-like transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D GL4_0450 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D GL4_2498 hypothetical protein K07733 alpA; prophage regulatory protein D GL4_0998 UPF0301 protein YqgE K07735 algH; putative transcriptional regulator D GL4_3384 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D GL4_1675 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D GL4_1970 ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D GL4_1568 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ D GL4_1816 hypothetical protein K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0