+E Transcription factors KO #

  Transcription Factors - Methylorubrum extorquens CM4

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Mchl_0534 transcriptional regulator, AraC family K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB D Mchl_1732 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Mchl_4441 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Mchl_4687 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D Mchl_1999 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Mchl_2364 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Mchl_2422 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Mchl_3535 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Mchl_0942 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family D Mchl_1563 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family C GntR family C TetR/AcrR family D Mchl_2058 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D Mchl_2113 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Mchl_4120 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon C Lrp/AsnC family D Mchl_2511 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D Mchl_4977 transcriptional regulator, LuxR family K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 C MarR family D Mchl_2452 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Mchl_0886 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D Mchl_2918 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Mchl_5285 cobalamin B12-binding K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D Mchl_1172 Fe2+/Zn2+ uptake regulation protein-like protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D Mchl_0456 ferric uptake regulator, Fur family K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D Mchl_4215 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D Mchl_4566 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Mchl_0586 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Mchl_1557 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Mchl_3812 transcriptional regulator, Crp/Fnr family K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein C Rrf2 family D Mchl_3494 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Mchl_0932 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D Mchl_1046 putative transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Mchl_4173 putative transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Mchl_1304 transcriptional regulator, TrmB K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D Mchl_2388 transcriptional regulator, XRE family with shikimate kinase activity K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator C PadR family C Other families D Mchl_3888 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Mchl_1200 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Mchl_5739 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Mchl_5647 plasmid maintenance system antidote protein, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Mchl_5524 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Mchl_1311 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein D Mchl_5511 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Mchl_1782 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Mchl_5139 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Mchl_1765 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Mchl_1851 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D Mchl_0364 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D Mchl_1535 FMN-binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D Mchl_1007 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Mchl_3556 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Mchl_1865 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Mchl_5564 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Mchl_5616 plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Mchl_4190 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Mchl_0432 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Mchl_4918 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D Mchl_5464 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Mchl_5468 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Mchl_5463 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Mchl_5467 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Mchl_2819 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Mchl_3260 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Mchl_3493 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Mchl_0269 hypothetical protein K07738 nrdR; transcriptional repressor NrdR D Mchl_2231 Sel1 domain protein repeat-containing protein K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0