+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanothrix soehngenii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MCON_1043 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MCON_0212 phr; deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MCON_2064 DNA-(apurinic or apyrimidinic site) lyase, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E MCON_1510 pcnA; DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen E MCON_3423 FLAP endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E MCON_0798 ligA; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E MCON_0548 conserved domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E MCON_2842 OB-fold nucleic acid binding domain protein K07466 RFA1; replication factor A1 D Other NER factors E MCON_0798 ligA; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E MCON_2842 OB-fold nucleic acid binding domain protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E MCON_1510 pcnA; DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen E MCON_0798 ligA; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E MCON_2842 OB-fold nucleic acid binding domain protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D MCON_1510 pcnA; DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MCON_0143 nudF; adp-ribose pyrophosphatase (adp-ribose diphosphatase)(adenosine diphosphoribose pyrophosphatase) (adpr-ppase) (adp-ribosephosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MCON_0264 conserved hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MCON_1043 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MCON_0212 phr; deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MCON_1319 uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MCON_2064 DNA-(apurinic or apyrimidinic site) lyase, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MCON_0422 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MCON_1877 apn; Apurinic-apyrimidinic endonuclease K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E MCON_2091 phosphoesterase, RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MCON_0432 phosphoesterase, RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E MCON_0473 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E MCON_2713 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E MCON_3368 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E MCON_0714 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MCON_1572 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E MCON_2112 conserved hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MCON_1573 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E MCON_1803 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MCON_1802 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E MCON_0714 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MCON_3242 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MCON_3241 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MCON_2926 divergent AAA domain family K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MCON_1351 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MCON_2091 phosphoesterase, RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MCON_0432 phosphoesterase, RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E MCON_3271 cas1; crispr-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E MCON_3378 cas1; crispr-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E MCON_2843 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E MCON_0075 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E MCON_3242 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MCON_3241 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 E MCON_2417 putative Ski2-type helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E MCON_3252 Ku protein K10979 ku; DNA end-binding protein Ku D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MCON_1103 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MCON_1102 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MCON_0764 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MCON_2091 phosphoesterase, RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MCON_0432 phosphoesterase, RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F MCON_3484 conserved domain protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MCON_0473 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F MCON_2713 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MCON_2602 dph2; DNA polymerase IV 2 K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D MCON_0553 PHP domain/helix-hairpin-helix motif protein K02347 polX; DNA polymerase (family X) C DNA helicases D MCON_2326 ATP-dependent RNA helicase, putative K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MCON_0143 nudF; adp-ribose pyrophosphatase (adp-ribose diphosphatase)(adenosine diphosphoribose pyrophosphatase) (adpr-ppase) (adp-ribosephosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MCON_0264 conserved hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MCON_1654 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D MCON_0023 Archaeal protein of unknown function (DUF650/DUF651) K22585 nreA; DNA repair protein NreA D MCON_1970 protein of unknown function (DUF650/651) K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024