+F Repair protein KO #

  DNA Repair and Recombination Proteins - Macrococcoides caseolyticum

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MCCL_0393 conserved hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MCCL_1843 ung; uracil DNA glycosylase homolog K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MCCL_1596 conserved hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MCCL_1599 A/G-specific adenine glycosylase homolog K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MCCL_1100 endonuclease III homolog K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MCCL_1669 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MCCL_1501 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MCCL_1026 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MCCL_0393 conserved hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MCCL_1843 ung; uracil DNA glycosylase homolog K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MCCL_1596 conserved hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MCCL_1599 A/G-specific adenine glycosylase homolog K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MCCL_0300 conserved hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MCCL_1356 formamidopyrimidine-DNA glycosylase homolog K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MCCL_1100 endonuclease III homolog K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MCCL_1207 type IV apurinic/apyrimidinic endonuclease K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E MCCL_1273 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E MCCL_1641 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MCCL_1357 polA; DNA polymerase I homolog K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MCCL_0510 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E MCCL_0509 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E MCCL_1320 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E MCCL_1642 ATP-depentend DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MCCL_1357 polA; DNA polymerase I homolog K02335 polA; DNA polymerase I [EC:2.7.7.7] E MCCL_1641 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MCCL_1866 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MCCL_1865 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MCCL_0221 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MCCL_1783 rpoE; probable DNA-directed RNA polymerase delta subunit homolog K03048 rpoE; DNA-directed RNA polymerase subunit delta E TRCF (transcription-repair coupling factor) F MCCL_1909 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MCCL_0888 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E MCCL_1322 recombination and DNA strand exchange inhibitor protein homolog K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MCCL_0889 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E MCCL_1479 hsdR; type II restriction enzyme K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E MCCL_1169 exodeoxyribonuclease VII large subunit homolog K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MCCL_1369 dnaE; DNA polymerase III alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MCCL_0849 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E MCCL_0002 dnaN; DNA polymerase III beta chain, sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MCCL_1237 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MCCL_1928 conserved hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MCCL_1627 conserved hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MCCL_1935 DNA polymerase III gamma and tau subunits homolog K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MCCL_1641 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MCCL_1642 ATP-depentend DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MCCL_1947 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E MCCL_1752 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E MCCL_1537 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E MCCL_0912 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein E MCCL_0952 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E MCCL_plsB0026 DNA methyltransferase homologue K06223 dam; DNA adenine methylase [EC:2.1.1.72] E MCCL_1476 conserved hypothetical protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MCCL_1259 exodeoxyribonuclease V alpha subunit homolog K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E MCCL_0875 recA; recombinase RecA K03553 recA; recombination protein RecA E MCCL_1280 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MCCL_1279 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MCCL_0796 priA; primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E MCCL_1003 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MCCL_1002 conserved hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 E MCCL_1561 conserved hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MCCL_0875 recA; recombinase RecA K03553 recA; recombination protein RecA E MCCL_1884 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E MCCL_0007 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E MCCL_0811 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MCCL_1273 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MCCL_1218 conserved hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E MCCL_1933 recR; recombination protein RecR K06187 recR; recombination protein RecR E MCCL_1164 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E MCCL_1097 recombination protein RecU homolog K03700 recU; recombination protein U E MCCL_1536 conserved hypothetical protein K03700 recU; recombination protein U E MCCL_1280 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MCCL_1279 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E MCCL_0592 conserved hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E MCCL_0591 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E MCCL_1003 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MCCL_1002 conserved hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 E MCCL_1561 conserved hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 E MCCL_1632 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MCCL_0009 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MCCL_0008 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MCCL_0834 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MCCL_0947 conserved hypothetical protein K07455 recT; recombination protein RecT F MCCL_1273 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MCCL_1218 conserved hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F MCCL_1933 recR; recombination protein RecR K06187 recR; recombination protein RecR F MCCL_1641 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F MCCL_0377 conserved hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MCCL_0472 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MCCL_1133 conserved hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MCCL_0510 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F MCCL_0509 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MCCL_1628 DNA-damage-inducible protein P homolog K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MCCL_1033 DNA-damage repair protein homolog K03502 umuC; DNA polymerase V C Other SOS response factors D MCCL_0875 recA; recombinase RecA K03553 recA; recombination protein RecA D MCCL_0995 lexA; SOS regulatory LexA protein K01356 lexA; repressor LexA [EC:3.4.21.88] D MCCL_1543 conserved hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D MCCL_1164 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D MCCL_1947 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MCCL_1752 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MCCL_1537 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MCCL_0912 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein D MCCL_0952 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MCCL_1604 conserved hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D MCCL_1323 rpoD; DNA-dependent DNA polymerase beta chain K02347 polX; DNA polymerase (family X) C DNA helicases D MCCL_1103 conserved hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D MCCL_1669 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MCCL_1501 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MCCL_1026 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MCCL_0483 nrdE; ribonucleoside-diphosphate reductase major subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MCCL_0484 nrdF; ribonucleoside-diphosphate reductase minor subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D MCCL_1370 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024