+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Methanobacterium congolense</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
D      Cap binding complex
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
D      Pre-mRNA cleavage factor IIm (CFIIm)
D      Cleavage and polyadenylation specificity factor (CPSF) complex
D      Cleavage stimulation factor (CSTF) complex
D      U7-dependent histone pre-mRNA processing factors
D      DRB sensitivity inducing factor (DSIF) complex
E        MCBB_1626 spt4; Transcription elongation factor Spt4 {ECO:0000255|HAMAP-Rule:MF_00949}	K15171 SUPT4H1; transcription elongation factor SPT4 
E        MCBB_0407 spt5; Transcription elongation factor Spt5 {ECO:0000255|HAMAP-Rule:MF_00950}	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
D      Poly(A) addition factors
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
D      TREX complex
D      TREX-2 complex
D      Nuclear pore complex
D      Ran-mediated transport factors
E        MCBB_0575 Cell division cycle protein 48 homolog MJ1156	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        MCBB_1750 Cell division cycle protein 48 homolog MJ1156	K13525 VCP; transitional endoplasmic reticulum ATPase 
D      eIF4F and regulatory proteins
D      APOBEC1-ACF complex
D      Other transport factors
E        MCBB_0578 pelA; Protein pelota homolog {ECO:0000255|HAMAP-Rule:MF_01853}	K06965 PELO; protein pelota 
C    Surveillance factors
D      Surveillance complex
E        MCBB_0335 prf1; Peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
D      Protein phosphatase 2A
D      Other surveillance factors
C    Factors involved in mRNA localization
D      Cargo complex
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        MCBB_0261 tuf; Elongation factor 1-alpha {ECO:0000255|HAMAP-Rule:MF_00118}	K03231 EEF1A; elongation factor 1-alpha 
E        MCBB_2002 Gtpbp1; GTP-binding protein 1	K03231 EEF1A; elongation factor 1-alpha 
D      Other mRNA localization factors
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
D      P-body specific factors
D      Stress granule specific factors
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
D      Lsm complex
D      5' exonucleases
D      Other 5'-3' decay factors
C    3'-5' decay
D      Core exosome factors
E        MCBB_2207 csl4; Exosome complex component Csl4 {ECO:0000255|HAMAP-Rule:MF_00975}	K07573 CSL4; exosome complex component CSL4 
E        MCBB_0471 rrp4; Exosome complex component Rrp4 {ECO:0000255|HAMAP-Rule:MF_00623}	K03679 RRP4; exosome complex component RRP4 
E        MCBB_0472 rrp41; Exosome complex component Rrp41 {ECO:0000255|HAMAP-Rule:MF_00591}	K11600 RRP41; exosome complex component RRP41 
E        MCBB_0473 rrp42; Exosome complex component Rrp42 {ECO:0000255|HAMAP-Rule:MF_00622}	K12589 RRP42; exosome complex component RRP42 
D      Exosome cofactors
D      TRAMP complex
D      Ski complex
D      Ccr4-NOT complex
D      Pan complex
D      Other 3'-5' decay factors
C    Other degradation factors
D      RNases
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A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        MCBB_1278 rnc; Ribonuclease 3 {ECO:0000255|HAMAP-Rule:MF_00104}	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        MCBB_1879 RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:AEG18959,1}	K12574 rnj; ribonuclease J [EC:3.1.-.-] 
E        MCBB_1335 rnj; Ribonuclease J {ECO:0000255|HAMAP-Rule:MF_01492}	K12574 rnj; ribonuclease J [EC:3.1.-.-] 
E        MCBB_1753 yhaM; 3'-5' exoribonuclease YhaM {ECO:0000255|HAMAP-Rule:MF_01427}	K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] 
D      Helicases
E        MCBB_0450 cshA; DEAD-box ATP-dependent RNA helicase CshA {ECO:0000255|HAMAP-Rule:MF_01493}	K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] 
E        MCBB_0870 recQ1; ATP-dependent DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
E        MCBB_0875 recQ3; putative ATP-dependent DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
D      Other RNA degradosome components
E        MCBB_1342 eno; Enolase {ECO:0000255|HAMAP-Rule:MF_00318}	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        MCBB_2174 dnaK; Chaperone protein DnaK	K04043 dnaK; molecular chaperone DnaK 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        MCBB_0471 rrp4; Exosome complex component Rrp4 {ECO:0000255|HAMAP-Rule:MF_00623}	K03679 RRP4; exosome complex component RRP4 
E        MCBB_2207 csl4; Exosome complex component Csl4 {ECO:0000255|HAMAP-Rule:MF_00975}	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        MCBB_0472 rrp41; Exosome complex component Rrp41 {ECO:0000255|HAMAP-Rule:MF_00591}	K11600 RRP41; exosome complex component RRP41 
E        MCBB_0473 rrp42; Exosome complex component Rrp42 {ECO:0000255|HAMAP-Rule:MF_00622}	K12589 RRP42; exosome complex component RRP42 
D      Others
E        MCBB_0516 putative ATP-dependent helicase MJ1401	K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-] 
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#Last updated: April 25, 2024