+E Ribosome biogenesis KO
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Ribosome Biogenesis - Microbacterium chocolatum
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D A8L33_11180 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C A8L33_10755 GTPase Era K03595 era; GTPase
C A8L33_10975 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C A8L33_05165 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C A8L33_06235 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C A8L33_08230 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C A8L33_10055 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C A8L33_00160 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D A8L33_12745 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D A8L33_10160 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D A8L33_12895 SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D A8L33_11485 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D A8L33_03750 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D A8L33_09130 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D A8L33_12765 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D A8L33_08740 hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D A8L33_13570 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D A8L33_02235 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D A8L33_08740 hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D A8L33_08785 MFS transporter K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D A8L33_09225 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C A8L33_06530 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C A8L33_13100 GCN5 family acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C A8L33_11390 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
B rRNA processing factors
C A8L33_10995 ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12]
C A8L33_10015 Holliday junction DNA helicase RuvA K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C A8L33_07615 cold-shock protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C A8L33_10755 GTPase Era K03595 era; GTPase
C A8L33_07690 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C A8L33_08800 ribosome biogenesis GTPase Der K03977 engA; GTPase
C A8L33_10975 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C A8L33_08560 GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C A8L33_08045 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C A8L33_09975 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C A8L33_08240 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C A8L33_10945 ribosome silencing factor K09710 ybeB; ribosome-associated protein
C A8L33_10765 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
C A8L33_12330 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C A8L33_11465 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024