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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Malus domestica (apple)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        103400544 DNA-directed RNA polymerase II subunit RPB1-like isoform X1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        103400553 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        103401039 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        103434788 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        103446412 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        103431306 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        103436450 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        103418929 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
E        103449810 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        103405606 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        103438265 DNA-directed RNA polymerase II subunit 4-like isoform X1	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        103446838 DNA-directed RNA polymerases IV and V subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        103455653 DNA-directed RNA polymerase II subunit 4-like	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        114825051 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        103438299 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        103455700 DNA-directed RNA polymerase II subunit RPB7-like	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        103403551 DNA-directed RNA polymerases II, IV and V subunit 9B	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        103452784 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        103424375 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103431694 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103438549 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103449855 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        114819654 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103405637 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103449349 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103401690 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103401760 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103407488 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103437616 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103449746 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        114820158 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        103436572 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        114827533 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        103422064 DNA-directed RNA polymerase IV subunit 1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        103410007 DNA-directed RNA polymerase V subunit 1-like isoform X1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        103412127 DNA-directed RNA polymerase V subunit 1-like	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        103421011 DNA-directed RNA polymerases IV and V subunit 2-like	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        103442053 DNA-directed RNA polymerases IV and V subunit 2-like	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        103416864 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        103425709 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        103430838 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        103453289 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        103407728 transcription initiation factor IIA large subunit-like isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        103447502 transcription initiation factor IIA large subunit	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        103410922 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        103401177 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        103411384 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103411385 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103415270 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103437783 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103442408 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103449759 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        103454431 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        114822637 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        114826823 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        114826824 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        103414688 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103429774 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103449304 TATA-box-binding protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103450689 TATA-box-binding protein 1-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103453871 TATA-box-binding protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103432767 transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        139194904 transcription initiation factor TFIID subunit 1-like	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        103437964 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        103427247 transcription initiation factor TFIID subunit 4b-like isoform X3	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103436717 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103440738 transcription initiation factor TFIID subunit 5 isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        103441980 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        103404975 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        103418978 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        103442948 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        103418657 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        103447003 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        103404632 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        103413694 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        103421526 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        103433211 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        103446140 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        103424156 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        103449066 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        103412307 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        103414467 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103419298 transcription initiation factor TFIID subunit 12-like	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103427529 transcription initiation factor TFIID subunit 12-like isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103453604 transcription initiation factor TFIID subunit 12b-like	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103411408 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        103424602 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        103437963 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        114825631 uncharacterized protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        103434445 transcription initiation factor IIF subunit alpha-like	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        103446770 transcription initiation factor IIF subunit alpha-like	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        103420878 transcription initiation factor IIF subunit beta-like	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        103432901 uncharacterized protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        103444806 uncharacterized protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        103450428 transcription initiation factor IIF subunit beta	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        103411061 general transcription and DNA repair factor IIH subunit TFB1-3-like	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        103425397 general transcription and DNA repair factor IIH subunit TFB1-3-like	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        103422116 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        103454091 general transcription and DNA repair factor IIH subunit TFB4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        103408851 general transcription and DNA repair factor IIH subunit TFB2-like	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        103446426 general transcription and DNA repair factor IIH subunit TFB2 isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        114825658 general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 isoform X1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        103432435 general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        103449056 LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        103434277 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        103450781 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        103415531 cyclin-dependent kinase D-3-like	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        103438044 cyclin-dependent kinase D-3	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        103456355 uncharacterized protein	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        103423557 cyclin-H1-1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        103415045 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        114827565 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        103400441 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        103436568 mediator of RNA polymerase II transcription subunit 18 isoform X1	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        103400974 mediator of RNA polymerase II transcription subunit 20A-like isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        114821680 mediator of RNA polymerase II transcription subunit 20A-like isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        139192389 mediator of RNA polymerase II transcription subunit 22b-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        103430144 mediator of RNA polymerase II transcription subunit 28-like	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        103436391 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        103430259 mediator of RNA polymerase II transcription subunit 7b-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        103453764 mediator of RNA polymerase II transcription subunit 7A-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        103409622 mediator of RNA polymerase II transcription subunit 10b-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        103452549 mediator of RNA polymerase II transcription subunit 10b	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        103412536 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        139192848 mediator of RNA polymerase II transcription subunit 21-like	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        103406464 mediator of RNA polymerase II transcription subunit 31-like isoform X1	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
E        103439572 mediator of RNA polymerase II transcription subunit 31 isoform X1	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        103430508 mediator of RNA polymerase II transcription subunit 14-like isoform X1	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        103434166 mediator of RNA polymerase II transcription subunit 14 isoform X1	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        103424871 cyclin-dependent kinase E-1-like	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        103426540 cyclin-dependent kinase E-1-like	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        103413641 cyclin-C1-2-like isoform X1	K15161 CCNC; cyclin-C 
E        114827671 cyclin-C1-2-like	K15161 CCNC; cyclin-C 
E        103414861 mediator of RNA polymerase II transcription subunit 13 isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        103423830 mediator of RNA polymerase II transcription subunit 23-like	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        103430619 mediator of RNA polymerase II transcription subunit 23-like	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        103402721 mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        103403242 mediator of RNA polymerase II transcription subunit 25-like isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        103424288 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        103425006 mediator of RNA polymerase II transcription subunit 32-like	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        103449835 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        103403834 mediator of RNA polymerase II transcription subunit 33A-like isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        103449038 mediator of RNA polymerase II transcription subunit 33B-like	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        103450791 mediator of RNA polymerase II transcription subunit 33A-like isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        103453060 mediator of RNA polymerase II transcription subunit 33A-like isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        103445732 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        103400055 uncharacterized protein isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        103400179 uncharacterized protein isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        103428873 transcriptional adapter ADA2a isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        103434417 transcriptional adapter ADA2b	K11314 TADA2A; transcriptional adapter 2-alpha 
E        114819308 transcriptional adapter ADA2b-like	K11314 TADA2A; transcriptional adapter 2-alpha 
E        103437964 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        103427247 transcription initiation factor TFIID subunit 4b-like isoform X3	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103436717 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103440738 transcription initiation factor TFIID subunit 5 isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        103441980 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        103404975 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        103418978 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        103442948 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        103418657 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        103447003 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        103424156 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        103449066 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        103414467 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103419298 transcription initiation factor TFIID subunit 12-like	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103427529 transcription initiation factor TFIID subunit 12-like isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103453604 transcription initiation factor TFIID subunit 12b-like	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103407706 SAGA-associated factor 11-like	K11363 SGF11; SAGA-associated factor 11 
E        103447343 SAGA-associated factor 11	K11363 SGF11; SAGA-associated factor 11 
E        139189363 SAGA-associated factor 11-like	K11363 SGF11; SAGA-associated factor 11 
E        139194394 SAGA-associated factor 11-like isoform X1	K11363 SGF11; SAGA-associated factor 11 
E        103404254 SAGA-associated factor 29 homolog A isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        103404255 SAGA-associated factor 29 homolog A-like isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        103442202 SAGA-associated factor 29 homolog A	K11364 SGF29; SAGA-associated factor 29 
E        103427277 protein CHROMATIN REMODELING 5-like isoform X1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        103430250 protein CHROMATIN REMODELING 5-like isoform X1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        103404191 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        103428992 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        103400056 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        103417974 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        103440570 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        103442199 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        103424191 uncharacterized protein	K12830 SF3B3; splicing factor 3B subunit 3 
E        103426377 spliceosome-associated protein 130 A-like	K12830 SF3B3; splicing factor 3B subunit 3 
E        103433519 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        103401890 ATP-dependent helicase BRM-like	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        103405393 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        103416368 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        103401723 SWI/SNF complex subunit SWI3C isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103409642 SWI/SNF complex subunit SWI3A-like	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103424685 SWI/SNF complex subunit SWI3C-like isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103434514 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103437517 SWI/SNF complex subunit SWI3A isoform X2	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103446713 SWI/SNF complex subunit SWI3B-like	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103454251 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        114824789 SWI/SNF complex subunit SWI3D-like	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103404188 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        103404194 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        103421445 SWI/SNF complex component SNF12 homolog isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        103437553 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        103432065 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
E        103448937 actin-related protein 4-like	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        103416368 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        103404616 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        103422894 RNA polymerase II transcriptional coactivator KIWI-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        103424768 RNA polymerase II transcriptional coactivator KIWI-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        103424977 RNA polymerase II transcriptional coactivator KELP-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        103402876 protein SHORT ROOT IN SALT MEDIUM 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        103401711 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        103432931 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        103408194 transcription elongation factor SPT4 homolog 2-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103421912 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103432312 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103409574 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        103418733 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        103439764 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        103426069 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
E        103428947 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
E        103445449 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        103434603 polyadenylation and cleavage factor homolog 4-like	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        103446682 polyadenylation and cleavage factor homolog 4-like	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        103449447 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        103453934 polyadenylation and cleavage factor homolog 4-like isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        103406499 cleavage and polyadenylation specificity factor subunit 1 isoform X2	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        103402533 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103441945 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103408978 uncharacterized protein isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        103420526 uncharacterized protein isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        103435642 30-kDa cleavage and polyadenylation specificity factor 30-like	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        103446121 YTP14; cleavage and polyadenylation specificity factor CPSF30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        103404045 serine/threonine-protein phosphatase PP1 isozyme 2-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103411647 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103411657 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103411866 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103433792 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103433904 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103434201 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103435475 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103443245 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103444745 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103450891 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103451061 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103426304 uncharacterized protein isoform X1	K06100 SYMPK; symplekin 
E        103452952 uncharacterized protein isoform X1	K06100 SYMPK; symplekin 
E        103409874 uncharacterized protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        103431256 uncharacterized protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        103428601 5'-3' exoribonuclease 3-like isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        103450393 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        103408229 NAD-capped RNA hydrolase DXO1-like	K14845 RAI1; RAT1-interacting protein 
E        103437037 NAD-capped RNA hydrolase DXO1-like	K14845 RAI1; RAT1-interacting protein 
E        103401694 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        103404167 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        103437611 uncharacterized protein isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        103442117 uncharacterized protein isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        103449440 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        103453921 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        103419188 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        103441022 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        103411642 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        103431080 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        103416850 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        103453147 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        103418084 protein CTR9 homolog isoform X1	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        103424559 protein LEO1 homolog isoform X1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        103437873 protein LEO1 homolog isoform X1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        103445152 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        103450837 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        139195364 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        103416452 uncharacterized protein	K15186 EAF; ELL-associated factor 
E        103444164 uncharacterized protein	K15186 EAF; ELL-associated factor 
E        103451592 uncharacterized protein	K15186 EAF; ELL-associated factor 
E        103435415 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103435416 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103440306 cyclin-T1-3	K15188 CCNT; cyclin T 
E        103445804 cyclin-T1-3-like isoform X2	K15188 CCNT; cyclin T 
E        103445807 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103445887 cyclin-T1-4-like	K15188 CCNT; cyclin T 
E        103453101 cyclin-T1-4-like	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        103435415 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103435416 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103440306 cyclin-T1-3	K15188 CCNT; cyclin T 
E        103445804 cyclin-T1-3-like isoform X2	K15188 CCNT; cyclin T 
E        103445807 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103445887 cyclin-T1-4-like	K15188 CCNT; cyclin T 
E        103453101 cyclin-T1-4-like	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        103400638 probable RNA methyltransferase At5g51130 isoform X2	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        103449535 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        103412383 la-related protein 6A-like	K15191 LARP7; La-related protein 7 
E        103434993 la-related protein 6A-like	K15191 LARP7; La-related protein 7 
E        103454486 la-related protein 6C isoform X2	K15191 LARP7; La-related protein 7 
E        103456327 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        114822926 la-related protein 6B-like	K15191 LARP7; La-related protein 7 
E        114824802 la-related protein 6C-like	K15191 LARP7; La-related protein 7 
E        103435415 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103435416 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103440306 cyclin-T1-3	K15188 CCNT; cyclin T 
E        103445804 cyclin-T1-3-like isoform X2	K15188 CCNT; cyclin T 
E        103445807 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        103445887 cyclin-T1-4-like	K15188 CCNT; cyclin T 
E        103453101 cyclin-T1-4-like	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        103421876 TATA-binding protein-associated factor BTAF1-like isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        103429371 TATA-binding protein-associated factor BTAF1-like isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        103431214 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        103437958 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        103409560 uncharacterized protein	K21752 DRAP1; Dr1-associated corepressor 
E        103428414 uncharacterized protein	K21752 DRAP1; Dr1-associated corepressor 
E        103410676 uncharacterized protein isoform X1	K15193 SPTY2D1; protein SPT2 
E        103440966 uncharacterized protein	K15193 SPTY2D1; protein SPT2 
E        103445416 protein spt2-like	K15193 SPTY2D1; protein SPT2 
E        103446210 uncharacterized protein isoform X2	K15193 SPTY2D1; protein SPT2 
E        114819266 uncharacterized protein isoform X1	K15193 SPTY2D1; protein SPT2 
E        139188632 uncharacterized protein	K15193 SPTY2D1; protein SPT2 
E        139196171 uncharacterized protein	K15193 SPTY2D1; protein SPT2 
E        103423480 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        103433587 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        103434773 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        103446439 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        103421728 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        103433182 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        103452476 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        103408223 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103433612 uncharacterized protein isoform X1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103434919 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103435115 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103437342 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103446291 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103446509 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103436926 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        103439096 protein IWS1 homolog 1-like	K17498 SPN1; transcription factor SPN1 
E        103411993 transcriptional elongation regulator MINIYO-like	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        103445272 LOW QUALITY PROTEIN: transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        103408601 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        103450826 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        103450850 uncharacterized protein isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        103403522 GPN-loop GTPase QQT2-like isoform X1	K24104 GPN; GPN-loop GTPase 
E        103405215 GPN-loop GTPase 3-like	K24104 GPN; GPN-loop GTPase 
E        103441035 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
E        103443239 uncharacterized protein isoform X1	K24104 GPN; GPN-loop GTPase 
E        103449323 GPN-loop GTPase QQT2-like isoform X1	K24104 GPN; GPN-loop GTPase 
E        103455886 GPN-loop GTPase QQT1-like	K24104 GPN; GPN-loop GTPase 
E        103418362 RNA-directed DNA methylation 4-like isoform X1	K28237 SLC7A6OS; RNA polymerase II nuclear localization protein 
E        103447303 RNA-directed DNA methylation 4 isoform X1	K28237 SLC7A6OS; RNA polymerase II nuclear localization protein 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        103421798 DNA-directed RNA polymerase III subunit 1 isoform X1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        103443311 DNA-directed RNA polymerase III subunit 1-like	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        103430960 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        103412574 uncharacterized protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        103412733 uncharacterized protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        103447184 uncharacterized protein isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        103449837 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        103439760 uncharacterized protein	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        103440640 uncharacterized protein isoform X1	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        103406825 uncharacterized protein	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        103426474 DNA-directed RNA polymerase III subunit RPC4-like isoform X2	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        103439612 uncharacterized protein	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        103401669 uncharacterized protein	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        103416436 uncharacterized protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        103442028 uncharacterized protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        103416193 ATP-dependent RNA helicase DRS1-like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        103450641 uncharacterized protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        103428934 uncharacterized protein	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        103453165 uncharacterized protein isoform X1	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        103416823 uncharacterized protein	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        103424375 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103431694 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103438549 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103449855 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        114819654 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103405637 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103449349 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103401690 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103401760 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103407488 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103437616 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103449746 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        114820158 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        103436572 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        114827533 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        103402266 transcription factor IIIA-like isoform X1	K09191 GTF3A; general transcription factor IIIA 
E        103431495 transcription factor IIIA-like isoform X2	K09191 GTF3A; general transcription factor IIIA 
E        103449046 transcription factor IIIA-like isoform X1	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        103414688 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103429774 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103449304 TATA-box-binding protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103450689 TATA-box-binding protein 1-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103453871 TATA-box-binding protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103434870 plant-specific TFIIB-related protein PTF2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        103443584 transcription factor IIIB 60 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        103428628 uncharacterized protein isoform X1	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        103424151 uncharacterized protein	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        103449266 uncharacterized protein isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        103442485 uncharacterized protein isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        114820149 uncharacterized protein isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        103443207 uncharacterized protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        103431362 uncharacterized protein isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        103430438 uncharacterized protein	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
E        103448653 uncharacterized protein isoform X1	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        103431362 uncharacterized protein isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        103443207 uncharacterized protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        103409571 uncharacterized protein isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        103426048 snRNA-activating protein complex subunit	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        103402617 uncharacterized protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
E        103423734 uncharacterized protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        103454361 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        103442024 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        103412574 uncharacterized protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        103412733 uncharacterized protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        103447184 uncharacterized protein isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        103449837 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        103416154 uncharacterized protein	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        103453588 DNA-directed RNA polymerase I subunit rpa49-like	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        103428591 uncharacterized protein	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
E        103450368 uncharacterized protein	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        103424375 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103431694 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103438549 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103449855 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        114819654 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103405637 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103449349 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103401690 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103401760 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103407488 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103437616 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103449746 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        114820158 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        103436572 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        114827533 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        103414688 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103429774 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103449304 TATA-box-binding protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103450689 TATA-box-binding protein 1-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103453871 TATA-box-binding protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        103454621 high mobility group B protein 6-like	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        103418214 uncharacterized protein	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        114827570 upstream activation factor subunit spp27-like isoform X1	K15223 UAF30; upstream activation factor subunit UAF30 
E        139196404 upstream activation factor subunit spp27-like isoform X1	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        103408194 transcription elongation factor SPT4 homolog 2-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103421912 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103432312 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103409574 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        103418733 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        103439764 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        103403781 ISWI chromatin-remodeling complex ATPase CHR11	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        103452980 ISWI chromatin-remodeling complex ATPase CHR11	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        71430861 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        71430805 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        71430803 rpoC2; RNA polymerase beta'' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        71430804 rpoC1; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        103440038 RNA polymerase sigma factor SigA isoform X1	K03086 rpoD; RNA polymerase primary sigma factor 
E        103445157 RNA polymerase sigma factor SigA-like	K03086 rpoD; RNA polymerase primary sigma factor 
E        103415614 RNA polymerase sigma factor SigC isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
E        103428780 RNA polymerase sigma factor SigC isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
E        103439850 RNA polymerase sigma factor SigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        103401177 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        103411384 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103411385 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103415270 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103437783 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103442408 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        103449759 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        103454431 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        114822637 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        114826823 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        114826824 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        103424602 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        103437963 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
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#Last updated: April 17, 2025