+F	Repair protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Repair and Recombination Proteins - Methylorubrum extorquens AM1</h2>
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A<b>Eukaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      Mex_1p2498 phr; deoxyribodipyrimidine photolyase (DNA photolyase)	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        Mex_1p1366 ung; Uracil-DNA glycosylase (UDG)	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Mex_1p0707 Putative 3-methyladenine DNA glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] 
E        Mex_1p3392 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        Mex_1p3881 putative Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
E        Mex_1p0411 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
E        Mex_1p2915 hypothetical protein	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
D      Long Patch-BER factors
E        DNA polymerase delta complex
E        DNA polymerase epsilon complex
D      Short Patch-BER factors
D      Other BER factors
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        XPC-HR23B-CETN2 complex
E        Cul4-DDB2 complex
E        NER4 complex
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase II complex
E        Cul4-CSA complex
E        Other TCR factor
D      TFIIH complex
D      RPA (replication factor A)
D      Other NER factors
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      MutL homologs
D      DNA polymerase delta complex
D      RPA (replication factor A)
D      RFC (replication factor C)
D      Other MMR factors
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      MRN(MRX) complex
D      BRCA1-core complex
D      BRCA1-A complex
D      BRCA1-B complex
D      BRCA1-C complex
D      BRCA complex
D      RecA family proteins
D      Rad52 family proteins
D      Rad54 family proteins
D      RecQ family DNA helicases
D      Bloom's syndrome complex (BTR)
D      RPA (replication factor A)
D      Protein phosphatase 4
D      AP-5 complex
D      SMC5-SMC6 complex
D      Other HR factors
C    NHEJ (non-homologous end-joining)
D      DNA-PK complex
D      MRX complex
D      DNA Ligase 4 complex
D      X-family DNA polymerases
D      Other NHEJ factors
C    FA (Fanconi anemia) pathway
D      FA core complex
D      FA core complex binding factors
D      Bloom's syndrome complex (BTR)
D      FANCD2-I complex
D      Downstream FA components
D      Other FA pathway factors
C    Other DSBR factors
D      Protein phosphatase 6
D      Ubiquitin ligases
D      Others
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
C    B-family DNA polymerases
C    A-family DNA polymerase
C    Rad6 epistasis group
C    Other TLS factors
B  Check point factors
C    Rad9-Hus1-Rad1 complex
C    HRAD17(Rad24)-RFC complex
C    Rad17-Mec3-Ddc1 complex
C    FPC (fork protection complex)
C    Triple T complex
C    BAG6-UBL4A-GET4 complex
C    Other check point factors
B  Other factors with a suspected DNA repair function
C    DNA polymerases
C    Nucleases
C    Helicases
C    PSO4 complex
C    Modulation of nucleotide pools
D      Mex_1p0202 putative mutator MutT protein precursor; putative NTP pyrophosphohydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Mex_1p1386 putative Nudix hydrolase family protein, putative pyrophosphohydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Mex_1p4696 putative GDP-mannose mannosyl hydrolase (nudD)	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Mex_1p1415 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
#
A<b>Prokaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      Mex_1p4715 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] 
D      Mex_1p2498 phr; deoxyribodipyrimidine photolyase (DNA photolyase)	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        Mex_1p1366 ung; Uracil-DNA glycosylase (UDG)	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Mex_1p2307 ung; Uracil-DNA glycosylase superfamily protein (DNA replication, recombination and repair)	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Mex_1p4641 putative phage DNA polymerase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Mex_1p2880 conserved hypothetical protein with DNA glycosylase domain; Uracil DNA glycosylase superfamily	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Mex_1p3118 conserved hypothetical protein; putative DNA glycosylase	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
E        Mex_1p0079 putative 3-methyladenine DNA glycosylase	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
E        Mex_1p0707 Putative 3-methyladenine DNA glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] 
E        Mex_1p3392 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        Mex_1p4702 tag; 3-methyl-adenine DNA glycosylase I	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] 
E        Mex_1p4436 mutM; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM)	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] 
E        Mex_1p3881 putative Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
E        Mex_1p0411 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
E        Mex_1p2915 hypothetical protein	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
E        Mex_1p4420 xthA; Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI)	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        Mex_1p1930 xthA; Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI)	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        Mex_1p2437 nfi; Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V) (DNase V)	K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] 
D      RecJ
E        Mex_1p2959 recJ; putative single-strand DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        Mex_2p0507 Single-stranded-DNA-specific exonuclease protein	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
D      DNA ligase
E        Mex_1p5091 dnlJ; DNA ligase, NAD(+)-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Mex_2p0992 ligA; DNA ligase, NAD(+)-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      DNA polymerase I
E        Mex_1p2436 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        Mex_1p4267 uvrA; DNA excision repair enzyme subunit, with UvrBC	K03701 uvrA; excinuclease ABC subunit A 
E        Mex_1p0099 Excinuclease ABC, A subunit	K03701 uvrA; excinuclease ABC subunit A 
E        Mex_1p4445 uvrB; UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)	K03702 uvrB; excinuclease ABC subunit B 
E        Mex_1p3083 uvrC; DNA exisiton repair enzyme together with UvrAB	K03703 uvrC; excinuclease ABC subunit C 
E        Mex_2p0399 putative ATP-dependent DNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_1p0214 uvrD; DNA-dependent ATPase I and helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_1p2804 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_2p0508 putative DNA-dependent ATPase I and helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_2p0726 putative DNA helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_1p2436 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
E        Mex_1p5091 dnlJ; DNA ligase, NAD(+)-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Mex_2p0992 ligA; DNA ligase, NAD(+)-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase complex (RNAP)
F          Mex_1p4405 rpoB; RNA polymerase, beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
F          Mex_1p4406 rpoC; RNA polymerase, beta prime subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
F          Mex_1p2167 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit)	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
F          Mex_1p3409 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit)	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] 
E        TRCF (transcription-repair coupling factor)
F          Mex_1p4552 mfd; transcription repair coupling protein, ATP-dependent helicase	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
F          Mex_1p1061 DEAD/DEAH box helicase domain protein	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
E        Mex_1p4678 mutS; DNA mismatch repair protein mutS	K03555 mutS; DNA mismatch repair protein MutS 
D      Molecular matchmaker
E        Mex_1p4660 mutL; DNA mismatch repair protein mutL	K03572 mutL; DNA mismatch repair protein MutL 
D      Strand discrimination factor
D      DNA exonucleases
E        Mex_2p0530 putative Exodeoxyribonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
E        Mex_1p4247 xseA; putative exonuclease VII, large subunit OB-fold nucleic acid binding domain	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] 
E        Mex_1p4705 xseB; exodeoxyribonuclease VII small subunit (exonuclease VII small subunit)	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] 
D      DNA polymerase III holoenzyme
E        Mex_1p0816 dnaE; DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        Mex_2p0727 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        Mex_1p0002 dnaN; DNA polymerase III, beta-subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        Mex_1p5105 conserved hypothetical protein	K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] 
E        Mex_1p1478 putative DNA polymerase III, delta subunit, holA	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        Mex_1p4581 holB; DNA polymerase III, delta prime subunit	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        Mex_1p0217 hypothetical protein, putative exonuclease domain	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        Mex_1p1378 dnaQ; DNA polymerase III epsilon subunit	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        Mex_2p0510 putative Exonuclease	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        Mex_2p0720 dnaQ; DNA polymerase III epsilon subunit	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        Mex_1p1794 dnaX; DNA polymerase III, tau and gamma subunits	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
D      DNA ligase
E        Mex_1p5091 dnlJ; DNA ligase, NAD(+)-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Mex_2p0992 ligA; DNA ligase, NAD(+)-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      Other MMR factors
E        Mex_2p0399 putative ATP-dependent DNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_1p0214 uvrD; DNA-dependent ATPase I and helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_1p2804 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_2p0508 putative DNA-dependent ATPase I and helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_2p0726 putative DNA helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Mex_1p2238 ssb; Single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
E        Mex_1p1918 adenine-specific DNA methyltransferase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
E        Mex_1p3758 D12 class N6 adenine-specific DNA methyltransferase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
E        Mex_2p0791 vsr; DNA mismatch endonuclease vsr	K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] 
E        Mex_1p0066 vsr; very-short-patch-repair endonuclease	K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] 
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      RecBC pathway proteins
E        Mex_1p0008 recD; Helicase	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        Mex_2p0511 putative Helicase, RecD/TraA family	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        Mex_2p0584 putative Helicase, RecD/TraA family	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        Mex_1p2721 recA; DNA strand exchange and recombination protein with protease and nuclease activity	K03553 recA; recombination protein RecA 
E        Mex_1p0739 ruvA; Holliday junction ATP-dependent DNA helicase ruvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        Mex_1p5225 ruvB; Holliday junction ATP-dependent DNA helicase	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        Mex_2p0995 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        Mex_1p0737 ruvC; RuvC; Holliday junction nuclease	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
E        Mex_1p3972 Hypothetical protein	K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] 
E        Mex_1p1178 priA; Primosome factor N' (replication factor Y)	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
E        Mex_2p0530 putative Exodeoxyribonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
E        Mex_1p0195 sbcC; Nuclease sbcCD subunit C	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        Mex_1p0194 sbcD; ATP-dependent dsDNA exonuclease	K03547 sbcD; DNA repair protein SbcD/Mre11 
D      RecFOR pathway proteins
E        Mex_1p2721 recA; DNA strand exchange and recombination protein with protease and nuclease activity	K03553 recA; recombination protein RecA 
E        Mex_1p4318 radA; DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms 
E        Mex_1p0003 recF; putative RecF protein	K03629 recF; DNA replication and repair protein RecF 
E        Mex_1p4550 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
E        Mex_1p2959 recJ; putative single-strand DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        Mex_2p0507 Single-stranded-DNA-specific exonuclease protein	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        Mex_1p0821 recO; DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
E        Mex_1p1532 recR; recombination protein recR	K06187 recR; recombination protein RecR 
E        Mex_1p3158 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
E        Mex_1p0739 ruvA; Holliday junction ATP-dependent DNA helicase ruvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        Mex_1p5225 ruvB; Holliday junction ATP-dependent DNA helicase	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        Mex_2p0995 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        Mex_1p0737 ruvC; RuvC; Holliday junction nuclease	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
D      AddAB pathway proteins
E        Mex_1p4883 putative helicase-exonuclease type V protein family	K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] 
E        Mex_1p4882 conserved hypothetical protein	K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] 
D      Other HR factor
E        Mex_1p3022 putative helicase domain protein with DEAD/DEAH motif	K19789 radD; DNA repair protein RadD 
D      Archaeal homologous recombinant proteins
E        Mex_1p0195 sbcC; Nuclease sbcCD subunit C	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        Mex_1p0194 sbcD; ATP-dependent dsDNA exonuclease	K03547 sbcD; DNA repair protein SbcD/Mre11 
E        Mex_1p4857 yjgR; putative enzyme with nucleoside triphosphate hydrolase domain	K06915 herA; DNA double-strand break repair helicase HerA and related ATPase 
C    NHEJ (non-homologous end-joining)
D      Two-component NHEJ DNA repair complex
D      SHIIR (short-homology-independent illegitimate recombination)
E        Facilitator
F          Mex_1p5016 gyrA; DNA gyrase, subunit A (type II topoisomerase)	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          Mex_2p0574 gyrA; DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          Mex_1p2546 gyrB; DNA gyrase, subunit B (type II topoisomerase)	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          Mex_2p0578 gyrB; DNA gyrase, subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          Mex_2p0524 putative DNA topoisomerase	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
F          Mex_1p3523 topA; DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
F          Mex_1p1949 putative DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
E        Supressor
D      SHDIR (short-homology-dependent illegitimate recombination)
E        RecET pathway
F          Mex_1p2959 recJ; putative single-strand DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
F          Mex_2p0507 Single-stranded-DNA-specific exonuclease protein	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
F          Mex_1p0821 recO; DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
F          Mex_1p1532 recR; recombination protein recR	K06187 recR; recombination protein RecR 
F          Mex_1p5091 dnlJ; DNA ligase, NAD(+)-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
F          Mex_2p0992 ligA; DNA ligase, NAD(+)-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Facilitator
F          Mex_1p2037 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit	K04764 ihfA; integration host factor subunit alpha 
F          Mex_2p0757 Putative integration host factor	K04764 ihfA; integration host factor subunit alpha 
F          Mex_1p0052 ihfB; integration host factor (IHF), beta subunit, site-specific recombination	K05788 ihfB; integration host factor subunit beta 
F          Mex_p20033 integration host factor (IHF) like DNA-binding protein	K05788 ihfB; integration host factor subunit beta 
E        Supressor
F          Mex_2p0530 putative Exodeoxyribonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
F          Mex_1p0005 recQ; ATP-dependent DNA helicase	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          Mex_2p0238 ATP-dependent DNA helicase (fragment)	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          Mex_2p0075 ATP-dependent DNA helicase (fragment)	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          Mex_1p4267 uvrA; DNA excision repair enzyme subunit, with UvrBC	K03701 uvrA; excinuclease ABC subunit A 
F          Mex_1p0099 Excinuclease ABC, A subunit	K03701 uvrA; excinuclease ABC subunit A 
F          Mex_1p4445 uvrB; UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)	K03702 uvrB; excinuclease ABC subunit B 
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
D      Mex_1p5172 dinB; DNA polymerase IV (Pol IV)	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
D      Mex_2p0850 dinB; DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
D      Mex_2p0643 umuC; component of DNA polymerase V, subunit C	K03502 umuC; DNA polymerase V 
D      Mex_2p0644 umuD; component of DNA polymerase V, subunit D	K03503 umuD; DNA polymerase V [EC:3.4.21.-] 
C    Other SOS response factors
D      Mex_1p2721 recA; DNA strand exchange and recombination protein with protease and nuclease activity	K03553 recA; recombination protein RecA 
D      Mex_1p5132 lexA; SOS response transcriptional repressor, lexA	K01356 lexA; repressor LexA [EC:3.4.21.88] 
D      Mex_1p3158 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
D      Mex_1p5023 putative damage-inducible mutagenesis protein (ImuA-like)	K14160 imuA; protein ImuA 
D      Mex_1p5024 putative damage-inducible mutagenesis protein (ImuB-like)	K14161 imuB; protein ImuB 
D      Mex_1p5025 dnaE; error-prone DNA polymerase, DNA polymerase III, alpha subunit	K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] 
D      Mex_1p2238 ssb; Single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
D      Mex_1p2304 conserved hypothetical protein	K03565 recX; regulatory protein 
B  Other factors with a suspected DNA repair function
C    DNA polymerase
C    DNA helicases
D      Mex_2p0618 Hypothetical protein	K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] 
D      Mex_1p3367 ATP-dependent DNA helicase	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] 
D      Mex_1p1571 ATP-dependent helicase	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] 
D      Mex_1p2592 DEAD/DEAH box helicase domain protein	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] 
D      Mex_2p1064 putative DEAD/DEAH box helicase domain protein	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] 
C    Modulation of nucleotide pools
D      Mex_1p0202 putative mutator MutT protein precursor; putative NTP pyrophosphohydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Mex_1p1386 putative Nudix hydrolase family protein, putative pyrophosphohydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Mex_1p4696 putative GDP-mannose mannosyl hydrolase (nudD)	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Mex_1p1415 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
D      Mex_1p0872 nrd; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, large subunit	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      Mex_2p0021 nrd; ribonucleoside-diphosphate reductase	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
C    Others
!
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#Last updated: August 19, 2024