+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanimicrococcus stummii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MmiEs2_09990 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MmiEs2_04530 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MmiEs2_03430 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MmiEs2_05490 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E MmiEs2_13240 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen E MmiEs2_11780 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E MmiEs2_09720 lig; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E MmiEs2_14300 dinG; 3'-5' exonuclease DinG K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E MmiEs2_14350 hypothetical protein K07466 RFA1; replication factor A1 D Other NER factors E MmiEs2_09720 lig; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E MmiEs2_14350 hypothetical protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E MmiEs2_13240 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen E MmiEs2_09720 lig; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E MmiEs2_14350 hypothetical protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D MmiEs2_13240 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MmiEs2_14560 dcd; dCTP deaminase, dUMP-forming K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MmiEs2_09990 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MmiEs2_08950 tmung; Type-4 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MmiEs2_09980 alkA; putative bifunctional transcriptional activator/DNA repair enzyme AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MmiEs2_04530 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MmiEs2_03430 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MmiEs2_15350 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MmiEs2_05490 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MmiEs2_10250 nfo_1; endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E MmiEs2_01990 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E MmiEs2_06290 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E MmiEs2_09310 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E MmiEs2_05750 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MmiEs2_14500 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E MmiEs2_12230 mutS2; Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MmiEs2_14550 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E MmiEs2_12300 polC; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MmiEs2_02790 cpdA; 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MmiEs2_16480 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MmiEs2_01990 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E MmiEs2_10280 recA; Protein RecA K04483 radA; DNA repair protein RadA E MmiEs2_01970 hypothetical protein K04484 radB; DNA repair protein RadB E MmiEs2_02790 cpdA; 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA K03547 sbcD; DNA repair protein SbcD/Mre11 E MmiEs2_13170 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MmiEs2_02650 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MmiEs2_02660 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MmiEs2_07270 topA_1; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F MmiEs2_13140 topA_2; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MmiEs2_01990 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F MmiEs2_11500 dbpA_2; ATP-dependent RNA helicase DbpA K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MmiEs2_06290 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F MmiEs2_09310 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MmiEs2_09270 dinB; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D MmiEs2_14560 dcd; dCTP deaminase, dUMP-forming K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D MmiEs2_02990 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024