+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Methanosarcina sp. WH1

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs D MSWH1_0248 rRNA biogenesis protein Nop5/Nop56 K14564 NOP56; nucleolar protein 56 C Box H/ACA snoRNPs D MSWH1_2800 Ribosome biogenesis protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B 90S particles C U3 small nucleolar RNA-associated proteins D MSWH1_1993 Imp4 family protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 C Helicases C GTPase C RNase C Kinase C Other 90S particles D MSWH1_2534 hypothetical protein K06961 KRR1; ribosomal RNA assembly protein B Pre-40S particles C Kinases D MSWH1_2533 Serine/threonine-protein kinase RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D MSWH1_1108 Serine/threonine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] C Export and cytoplasmic maturation factors D MSWH1_0875 AMP/CMP kinase AK6 K18532 AK6; adenylate kinase [EC:2.7.4.3] D MSWH1_1121 Ribosome biogenesis protein TSR3 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] C Other pre-40S particles D MSWH1_0622 RNase L inhibitor K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 B Pre-60S particles C Helicases C GTPases D MSWH1_2157 GTP-binding protein, gtp1/obg family K06943 NOG1; nucleolar GTP-binding protein C RNases D RNase MRP E MSWH1_2001 Ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] E MSWH1_2002 Ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] C Kinases C Export and cytoplasmic maturation factors D MSWH1_0572 Eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D MSWH1_0790 NMD protein affecting ribosome stability and mRNA decay K07562 NMD3; 60S ribosomal export protein NMD3 D MSWH1_1999 Shwachman-Bodian-Diamond syndrome protein K14574 SDO1; ribosome maturation protein SDO1 C 5-FMC complex C Ribosome quality control proteins D MSWH1_0067 Cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase D MSWH1_0643 Cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase D MSWH1_1173 Cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase C Other pre-60S particles B Other ribosome biogenesis factors C MSWH1_2163 GTPase Era K03595 era; GTPase # AProkaryotic type B Sno RNPs C Box C/D snoRNPs D MSWH1_0248 rRNA biogenesis protein Nop5/Nop56 K14564 NOP56; nucleolar protein 56 D MSWH1_0249 Fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein D MSWH1_1265 LSU ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae C Box H/ACA snoRNPs D MSWH1_2740 gar1 - like small nucleolar rnp K07569 gar1; RNA-binding protein D MSWH1_2800 Ribosome biogenesis protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B rRNA transcription factors C MSWH1_2178 transcription elongation factor NusA-like protein K02600 nusA; transcription termination/antitermination protein NusA B rRNA modification factors C 16S rRNA modification factors D MSWH1_1375 putative ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D MSWH1_2009 Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D MSWH1_2243 Cell division protein FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D MSWH1_2009 Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] B ribosomal protein modification factors C MSWH1_0023 Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C MSWH1_1948 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C MSWH1_1949 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] B rRNA processing factors B rRNA helicases C MSWH1_1062 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C MSWH1_2755 Cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C MSWH1_2163 GTPase Era K03595 era; GTPase C MSWH1_1877 putative GTPase related to EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C MSWH1_2462 GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C MSWH1_0080 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C MSWH1_0134 RNA-binding protein YhbY K07574 yhbY; RNA-binding protein C MSWH1_0516 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 2, 2025