+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Methylovorus glucosetrophus

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D Msip34_1780 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D Msip34_0005 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D Msip34_1438 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C Msip34_1779 GTP-binding protein Era K03595 era; GTPase C Msip34_0514 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C Msip34_0075 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C Msip34_0890 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C Msip34_0069 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA C Msip34_2256 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB C Msip34_0289 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D Msip34_1136 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Msip34_0576 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Msip34_0224 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Msip34_0187 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Msip34_1920 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Msip34_0480 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Msip34_2825 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Msip34_0452 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Msip34_1396 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Msip34_2310 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D Msip34_1721 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Msip34_1874 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Msip34_2175 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Msip34_1000 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Msip34_0894 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D Msip34_1719 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Msip34_0962 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Msip34_0925 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Msip34_1265 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Msip34_1708 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Msip34_0590 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Msip34_2616 RNA-binding S4 domain protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C Msip34_2285 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C Msip34_2393 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C Msip34_1701 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C Msip34_0022 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C Msip34_0929 modification methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C Msip34_1805 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C Msip34_1780 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Msip34_1264 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] C Msip34_0619 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] C Msip34_0629 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases B GTPases C Msip34_1779 GTP-binding protein Era K03595 era; GTPase C Msip34_1441 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C Msip34_1710 small GTP-binding protein K03977 engA; GTPase C Msip34_0514 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] C Msip34_1067 GTP-binding protein HSR1-related K14540 rbgA; ribosome biogenesis GTPase A C Msip34_0004 GTP-binding proten HflX K03665 hflX; GTPase C Msip34_1691 GTP-binding proten HflX K03665 hflX; GTPase B Other maturation factors C Msip34_0379 SUA5/yciO/yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C Msip34_0053 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C Msip34_0071 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C Msip34_0068 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP C Msip34_0143 conserved hypothetical protein K14761 rlbA; ribosome-associated protein C Msip34_2174 iojap-like protein K09710 ybeB; ribosome-associated protein C Msip34_2121 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor C Msip34_1875 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein C Msip34_2182 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein C Msip34_0201 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor C Msip34_2014 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C Msip34_1391 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024