+E Ribosome biogenesis KO
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Ribosome Biogenesis - Methanosarcina sp. Kolksee
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D MSKOL_3059 rRNA biogenesis protein Nop5/Nop56 K14564 NOP56; nucleolar protein 56
C Box H/ACA snoRNPs
D MSKOL_2732 Ribosome biogenesis protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
D MSKOL_2665 putative RNA-processing protein K06961 KRR1; ribosomal RNA assembly protein
B Pre-40S particles
C Kinases
D MSKOL_2664 Serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D MSKOL_2586 Serine/threonine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D MSKOL_0654 AMP/CMP kinase AK6 K18532 AK6; adenylate kinase [EC:2.7.4.3]
D MSKOL_1682 Ribosome biogenesis protein TSR3 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
C Other pre-40S particles
D MSKOL_2151 RNase L inhibitor K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
C GTPases
D MSKOL_1094 GTP-binding protein, gtp1/obg family K06943 NOG1; nucleolar GTP-binding protein
C RNases
D RNase MRP
E MSKOL_0856 Ribonuclease P protein component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E MSKOL_1117 Ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E MSKOL_1118 Ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
C Kinases
C Export and cytoplasmic maturation factors
D MSKOL_3079 Eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D MSKOL_0961 NMD protein affecting ribosome stability and mRNA decay K07562 NMD3; 60S ribosomal export protein NMD3
D MSKOL_1115 Shwachman-Bodian-Diamond syndrome protein K14574 SDO1; ribosome maturation protein SDO1
C 5-FMC complex
C Ribosome quality control proteins
D MSKOL_3388 Cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase
D MSKOL_3026 Cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase
D MSKOL_1200 Cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase
D MSKOL_1003 Cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase
C Other pre-60S particles
B Other ribosome biogenesis factors
C MSKOL_1844 GTPase Era K03595 era; GTPase
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D MSKOL_3059 rRNA biogenesis protein Nop5/Nop56 K14564 NOP56; nucleolar protein 56
D MSKOL_3058 Fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein
D MSKOL_1924 LSU ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D MSKOL_0502 gar1 - like small nucleolar rnp K07569 gar1; RNA-binding protein
D MSKOL_2732 Ribosome biogenesis protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
C MSKOL_2412 transcription elongation factor NusA-like protein K02600 nusA; transcription termination/antitermination protein NusA
B rRNA modification factors
C 16S rRNA modification factors
D MSKOL_2173 putative ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D MSKOL_2106 Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D MSKOL_1445 Cell division protein FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D MSKOL_2106 Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
B ribosomal protein modification factors
C MSKOL_2380 Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C MSKOL_0054 Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C MSKOL_0370 Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C MSKOL_0581 Ribosomal-protein-L7p-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
B rRNA processing factors
B rRNA helicases
C MSKOL_0897 Cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C MSKOL_1271 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C MSKOL_1844 GTPase Era K03595 era; GTPase
C MSKOL_1425 putative GTPase related to EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C MSKOL_2996 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C MSKOL_3382 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C MSKOL_0250 RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C MSKOL_0196 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024