+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Methanosarcina sp. WWM596
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ACRISPR-Cas system
B Universal Cas proteins
C MSWHS_2893 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C MSWHS_2621 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C MSWHS_2894 CRISPR-associated protein, Cas2 K09951 cas2; CRISPR-associated protein Cas2
C MSWHS_2620 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
D MSWHS_2888 CRISPR-associated helicase Cas3, protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D MSWHS_2616 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
C Subtype I-A factors
D MSWHS_2887 Transcriptional regulator K07725 csa3; CRISPR-associated protein Csa3
D MSWHS_2619 CRISPR-associated protein, Cst1 family K19088 cst1; CRISPR-associated protein Cst1
D MSWHS_2618 CRISPR-associated negative autoregulator, Cst2 family K19075 cst2; CRISPR-associated protein Cst2
D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D MSWHS_2617 CRISPR-associated protein, Cas5t family K19090 cas5t; CRISPR-associated protein Cas5t
D MSWHS_2623 CRISPR repeat RNA endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-B factors
D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-C factors
D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-D factors
D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D MSWHS_2623 CRISPR repeat RNA endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-E factors
D MSWHS_2889 CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA
D MSWHS_2890 CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC
D MSWHS_2891 CRISPR-associated protein, Cas5e family K19125 casD; CRISPR system Cascade subunit CasD
D MSWHS_2892 CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE
C Subtype I-F factors
C Subtype I-U factors
D MSWHS_2609 DUF324 domain-containing protein K19134 csx10; CRISPR-associated protein Csx10
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
D MSWHS_2605 CRISPR-associated protein, Csx3 family K19144 csx3; CRISPR-associated protein Csx3
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ARestriction and modification system (R-M system)
B Type I R-M system
C MSWHS_1868 Type I restriction-modification system, restriction subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C MSWHS_1299 Type I restriction-modification system, restriction subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C MSWHS_1867 Type I restriction-modification system, specificity subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C MSWHS_1296 Type I restriction-modification system, specificity subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C MSWHS_3003 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C MSWHS_1866 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C MSWHS_1295 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C MSWHS_2668 Type I restriction-modification enzyme M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C MSWHS_1667 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
B Type III R-M system
B Type IV R-M system
C MSWHS_0189 hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
C MSWHS_1906 Hnh endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
C MSWHS_0097 Mrr restriction system protein K07448 mrr; restriction system protein
C MSWHS_1512 hypothetical protein K07448 mrr; restriction system protein
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
C ChpB-ChpS
C YhaV-PrlF
C RelE/StbE-RelB/StbD
C YafQ-dinJ
C YoeB-YefM
C HipA-HipB
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
D MSWHS_2051 Transcriptional regulator K03973 pspC; phage shock protein C
C CcdB-CcdA
C ParE-ParD
C Doc-Phd
C HigB-HigA
C MqsR-MqsA
C VapC-VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
C BC_0920-BC_0921
C Type II TA system related factors
D MSWHS_2089 Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D MSWHS_0835 Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D MSWHS_2316 Glutamyl-tRNA synthetase / Glutamyl-tRNA(Gln) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D MSWHS_2530 Endoribonuclease Nob1 K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C MSWHS_2439 Homocysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C MSWHS_3025 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023