+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Methanosarcina sp. WWM596

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ACRISPR-Cas system B Universal Cas proteins C MSWHS_2893 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 C MSWHS_2621 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 C MSWHS_2894 CRISPR-associated protein, Cas2 K09951 cas2; CRISPR-associated protein Cas2 C MSWHS_2620 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins D MSWHS_2888 CRISPR-associated helicase Cas3, protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D MSWHS_2616 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] C Subtype I-A factors D MSWHS_2887 Transcriptional regulator K07725 csa3; CRISPR-associated protein Csa3 D MSWHS_2619 CRISPR-associated protein, Cst1 family K19088 cst1; CRISPR-associated protein Cst1 D MSWHS_2618 CRISPR-associated negative autoregulator, Cst2 family K19075 cst2; CRISPR-associated protein Cst2 D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D MSWHS_2617 CRISPR-associated protein, Cas5t family K19090 cas5t; CRISPR-associated protein Cas5t D MSWHS_2623 CRISPR repeat RNA endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] C Subtype I-B factors D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-C factors D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-D factors D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D MSWHS_2623 CRISPR repeat RNA endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] C Subtype I-E factors D MSWHS_2889 CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA D MSWHS_2890 CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC D MSWHS_2891 CRISPR-associated protein, Cas5e family K19125 casD; CRISPR system Cascade subunit CasD D MSWHS_2892 CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE C Subtype I-F factors C Subtype I-U factors D MSWHS_2609 DUF324 domain-containing protein K19134 csx10; CRISPR-associated protein Csx10 B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors D MSWHS_0368 RecB family exonuclease K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D MSWHS_2622 CRISPR-associated RecB family exonuclease Cas4a K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors D MSWHS_2605 CRISPR-associated protein, Csx3 family K19144 csx3; CRISPR-associated protein Csx3 # ARestriction and modification system (R-M system) B Type I R-M system C MSWHS_1868 Type I restriction-modification system, restriction subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C MSWHS_1299 Type I restriction-modification system, restriction subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C MSWHS_1867 Type I restriction-modification system, specificity subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C MSWHS_1296 Type I restriction-modification system, specificity subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C MSWHS_3003 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MSWHS_1866 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MSWHS_1295 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MSWHS_2668 Type I restriction-modification enzyme M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MSWHS_1667 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] B Type II R-M system C Restriction endonucleases C DNA methyltransferases B Type III R-M system B Type IV R-M system C MSWHS_0189 hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] C MSWHS_1906 Hnh endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] C MSWHS_0097 Mrr restriction system protein K07448 mrr; restriction system protein C MSWHS_1512 hypothetical protein K07448 mrr; restriction system protein # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok C SymE-SymR C Ldr-Rdl C TisB-IstR C Ibs-Sib C ShoB-OhsC C RalR-RalA B Type II TA system C MazF-MazE C ChpB-ChpS C YhaV-PrlF C RelE/StbE-RelB/StbD C YafQ-dinJ C YoeB-YefM C HipA-HipB C HicA-HicB C YafO-YafN C Hha-TomB C PspC-PspB D MSWHS_2051 Transcriptional regulator K03973 pspC; phage shock protein C C CcdB-CcdA C ParE-ParD C Doc-Phd C HigB-HigA C MqsR-MqsA C VapC-VapB C PezT-PezA C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA C BC_0920-BC_0921 C Type II TA system related factors D MSWHS_2089 Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D MSWHS_0835 Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D MSWHS_2316 Glutamyl-tRNA synthetase / Glutamyl-tRNA(Gln) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D MSWHS_2530 Endoribonuclease Nob1 K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU C CptA-CptB B Type V TA system C GhoT-GhoS # ADNA phosphothiolation system B Sulfur modification proteins C MSWHS_2439 Homocysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C MSWHS_3025 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023