+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mesoflavibacter sp. HG96

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D C7H62_0991 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D C7H62_0024 Cryptochrome K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C7H62_0034 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E C7H62_2424 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E C7H62_0858 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E C7H62_2541 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D C7H62_1572 putative Nudix-like regulator K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C7H62_1019 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D C7H62_0991 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D C7H62_0024 Cryptochrome K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C7H62_0034 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C7H62_0023 Protein related to deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E C7H62_2424 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E C7H62_1607 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E C7H62_0858 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E C7H62_0829 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E C7H62_2541 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E C7H62_0866 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E C7H62_1162 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E C7H62_2721 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E C7H62_1415 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E C7H62_2116 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E C7H62_2544 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E C7H62_1827 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E C7H62_1294 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E C7H62_2090 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E C7H62_1415 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E C7H62_2721 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F C7H62_0264 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F C7H62_0263 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F C7H62_1701 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F C7H62_1322 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E C7H62_1495 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E C7H62_2422 Recombination inhibitory protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E C7H62_0222 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E C7H62_0784 DEDDh 3'-5' exonuclease domain / DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E C7H62_2202 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E C7H62_2096 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E C7H62_1089 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E C7H62_1893 DNA Pol III Epsilon Chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E C7H62_2243 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E C7H62_2698 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E C7H62_2325 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E C7H62_2721 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E C7H62_2090 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E C7H62_0857 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E C7H62_0930 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E C7H62_1005 RecA protein K03553 recA; recombination protein RecA E C7H62_1440 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E C7H62_1436 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E C7H62_0764 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E C7H62_0055 Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E C7H62_1005 RecA protein K03553 recA; recombination protein RecA E C7H62_1282 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E C7H62_0227 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E C7H62_2084 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E C7H62_1162 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E C7H62_1257 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E C7H62_1888 Recombination protein RecR K06187 recR; recombination protein RecR E C7H62_2710 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E C7H62_1440 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E C7H62_1436 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E C7H62_0764 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E C7H62_1173 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E C7H62_1722 YjgR K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F C7H62_2359 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F C7H62_1729 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F C7H62_0195 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F C7H62_1537 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F C7H62_0041 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F C7H62_0859 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F C7H62_1162 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F C7H62_1257 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F C7H62_1888 Recombination protein RecR K06187 recR; recombination protein RecR F C7H62_2721 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F C7H62_0039 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F C7H62_1981 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F C7H62_2116 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F C7H62_2544 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F C7H62_1827 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D C7H62_1187 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D C7H62_1269 Error-prone, lesion bypass DNA polymerase V (UmuC) K03502 umuC; DNA polymerase V D C7H62_1270 Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D C7H62_1005 RecA protein K03553 recA; recombination protein RecA D C7H62_2710 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D C7H62_0857 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C7H62_0930 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C7H62_1260 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D C7H62_2383 ATP-dependent, 3'-5' DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D C7H62_1572 putative Nudix-like regulator K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C7H62_1019 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D C7H62_2250 Ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D C7H62_2249 Ribonucleotide reductase of class Ia (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D C7H62_0233 3'-to-5' oligoribonuclease A K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024