+E Transcription factors KO
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Transcription Factors - Methanobacterium sp. BAmetb5
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
D CIT02_07750 replication protein A K07466 RFA1; replication factor A1
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
D CIT02_05420 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D CIT02_05615 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D CIT02_05625 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
C LysR family
C DeoR family
C LacI family
C GntR family
C TetR/AcrR family
D CIT02_03610 hypothetical protein K09017 rutR; TetR/AcrR family transcriptional regulator
D CIT02_00105 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D CIT02_05765 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
C Lrp/AsnC family
C LuxR family
C MarR family
D CIT02_09190 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
C MerR family
D CIT02_10870 hypothetical protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D CIT02_09760 ferric uptake regulation protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
C ArsR family
D CIT02_04120 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CIT02_00900 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D CIT02_08065 transcriptional regulator K07721 K07721; ArsR family transcriptional regulator
C XRE family
C PadR family
D CIT02_04840 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D CIT02_08260 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D CIT02_06965 hypothetical protein K10947 K10947; PadR family transcriptional regulator
C Other families
D CIT02_02070 DtxR family iron (metal) dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D CIT02_02025 DtxR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D CIT02_00160 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CIT02_06275 hypothetical protein K09720 nrpRI; HTH-type transcriptional regulator, global nitrogen regulator NrpRI
D CIT02_05515 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D CIT02_10370 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D CIT02_05035 orotate phosphoribosyltransferase K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism
D CIT02_06475 transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D CIT02_01435 DUF1887 domain-containing protein K07725 csa3; CRISPR-associated protein Csa3
D CIT02_10000 transcriptional regulator K07728 K07728; putative transcriptional regulator
D CIT02_07665 transcriptional regulator K07729 K07729; putative transcriptional regulator
D CIT02_04720 transcriptional regulator K07729 K07729; putative transcriptional regulator
D CIT02_10580 transcriptional regulator K07729 K07729; putative transcriptional regulator
D CIT02_03855 transcriptional regulator K07730 K07730; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D CIT02_01015 nickel-responsive regulator 1 K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D CIT02_04380 nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D CIT02_03680 nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D CIT02_01740 nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
B Other transcription factors
C BglG family
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0