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Transcription Machinery - Methylibium sp. Pch-M
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E C1M51_13745 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E C1M51_06930 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E C1M51_07105 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E C1M51_07100 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E C1M51_14525 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E C1M51_16035 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E C1M51_02010 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E C1M51_09990 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E C1M51_12345 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E C1M51_17160 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E C1M51_07585 RNA polymerase sigma-e factor sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E C1M51_07970 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E C1M51_05470 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
E C1M51_09925 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E C1M51_05020 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
E C1M51_09455 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E C1M51_17995 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E C1M51_13995 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
E C1M51_07130 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E C1M51_13310 glutathione S-transferase K03599 sspA; stringent starvation protein A
E C1M51_13315 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
E C1M51_12350 anti-sigma 24 factor K03597 rseA; sigma-E factor negative regulatory protein RseA
E C1M51_12355 transcriptional regulator K03598 rseB; sigma-E factor negative regulatory protein RseB
D Transcription elongation factors
E C1M51_07320 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
E C1M51_06760 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
E C1M51_07310 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor
E C1M51_01955 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E C1M51_14490 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E C1M51_01860 transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024