+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Methylophilus sp. TWE2

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D ACJ67_11215 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D ACJ67_12340 kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D ACJ67_06720 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C ACJ67_11210 GTPase Era K03595 era; GTPase C ACJ67_03485 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C ACJ67_00955 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor C ACJ67_13695 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA C ACJ67_11955 antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C ACJ67_02545 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D ACJ67_10500 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D ACJ67_10120 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D ACJ67_01815 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D ACJ67_13220 SAM-dependent methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D ACJ67_04555 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D ACJ67_12405 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D ACJ67_14445 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D ACJ67_12550 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D ACJ67_07245 SAM-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D ACJ67_12585 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D ACJ67_08390 23S rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D ACJ67_09860 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D ACJ67_10170 23S rRNA methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D ACJ67_04870 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D ACJ67_09060 competence protein ComJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D ACJ67_08460 DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D ACJ67_06805 50S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D ACJ67_05290 23S rRNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D ACJ67_05185 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D ACJ67_06735 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D ACJ67_07015 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D ACJ67_10030 23S rRNA pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D ACJ67_14265 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C ACJ67_11790 GCN5 family acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C ACJ67_12960 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C ACJ67_07040 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C ACJ67_10160 protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C ACJ67_14095 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C ACJ67_05190 SAM-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C ACJ67_11295 cupin K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C ACJ67_11215 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C ACJ67_06730 ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12] C ACJ67_05020 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C ACJ67_05065 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases B GTPases C ACJ67_11210 GTPase Era K03595 era; GTPase C ACJ67_06705 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C ACJ67_06755 GTP-binding protein Der K03977 engA; GTPase C ACJ67_03485 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] C ACJ67_08605 GTPase K14540 rbgA; ribosome biogenesis GTPase A C ACJ67_07060 GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C ACJ67_13735 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C ACJ67_00285 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C ACJ67_13685 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C ACJ67_13700 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP C ACJ67_01690 RNA-binding protein K14761 rlbA; ribosome-associated protein C ACJ67_04865 Iojap-like protein K09710 ybeB; ribosome-associated protein C ACJ67_11280 endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor C ACJ67_09865 RNA-binding protein YhbY K07574 yhbY; RNA-binding protein C ACJ67_04890 hypothetical protein K09889 yjgA; ribosome-associated protein C ACJ67_01130 RNA polymerase subunit sigma-54 K05808 hpf; ribosome hibernation promoting factor C ACJ67_04250 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase C ACJ67_07280 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024