+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanobacterium formicicum BRM9

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BRM9_0794 ogt; 6-O-methylguanine DNA methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BRM9_1866 phrB; deoxyribodipyrimidine photolyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BRM9_2368 ogg; 8-oxoguanine DNA glycosylase Ogg K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E BRM9_1013 nth1; endonuclease III Nth1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E BRM9_2263 pcn; DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen E BRM9_1988 fen; flap endonuclease Fen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E BRM9_2137 dnl1; ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) E BRM9_2296 replication factor A K07466 RFA1; replication factor A1 D Other NER factors E BRM9_2137 dnl1; ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E BRM9_2296 replication factor A K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E BRM9_2263 pcn; DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen E BRM9_2137 dnl1; ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E BRM9_2296 replication factor A K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D BRM9_2263 pcn; DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D BRM9_0090 endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-] C Helicases C PSO4 complex C Modulation of nucleotide pools D BRM9_1129 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRM9_2266 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRM9_0698 dut; dUTP diphosphatase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BRM9_0794 ogt; 6-O-methylguanine DNA methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BRM9_1866 phrB; deoxyribodipyrimidine photolyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BRM9_0478 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BRM9_0657 mutM2; formamidopyrimidine-DNA glycosylase MutM2 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BRM9_0255 mutM1; formamidopyrimidine-DNA glycosylase MutM1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BRM9_1013 nth1; endonuclease III Nth1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BRM9_2120 xth; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BRM9_2115 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E BRM9_0007 recJ1; ssDNA exonuclease RecJ1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BRM9_1619 recJ2; ssDNA exonuclease RecJ2 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E BRM9_1403 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A E BRM9_1401 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B E BRM9_1399 uvrC; excinuclease ABC C subunit UvrC K03703 uvrC; excinuclease ABC subunit C E BRM9_1158 ATP-dependent DNA helicase UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BRM9_0742 DNA mismatch repair ATPase MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E BRM9_1158 ATP-dependent DNA helicase UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRM9_0499 dam; DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BRM9_1977 DNA double-strand break repair protein Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 E BRM9_1976 DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BRM9_1210 divergent AAA domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRM9_0290 divergent AAA domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRM9_0007 recJ1; ssDNA exonuclease RecJ1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BRM9_1619 recJ2; ssDNA exonuclease RecJ2 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E BRM9_1436 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E BRM9_1903 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E BRM9_2297 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E BRM9_0631 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E BRM9_0323 hjc; archaeal Holliday junction resolvase Hjc K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E BRM9_1977 DNA double-strand break repair protein Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 E BRM9_1976 DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 E BRM9_1975 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E BRM9_1974 NurA domain-containing protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] E BRM9_1472 DEAD/DEAH box helicase domain-containing protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BRM9_1589 Ku protein K10979 ku; DNA end-binding protein Ku D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BRM9_0718 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BRM9_0007 recJ1; ssDNA exonuclease RecJ1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BRM9_1619 recJ2; ssDNA exonuclease RecJ2 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F BRM9_1403 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A F BRM9_1401 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D BRM9_1446 PHP domain-containing protein K02347 polX; DNA polymerase (family X) C DNA helicases D BRM9_1182 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BRM9_2332 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BRM9_1421 DEAD/DEAH box helicase domain-containing protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BRM9_1129 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRM9_2266 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRM9_0698 dut; dUTP diphosphatase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D BRM9_1928 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024