+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanobacterium formicicum DSM1535

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DSM1535_0756 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DSM1535_0049 phr; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DSM1535_1299 putative N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E DSM1535_1672 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E DSM1535_1197 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E DSM1535_0180 fen; Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E DSM1535_1543 lig; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) E DSM1535_1230 Replication factor-A domain-containing protein K07466 RFA1; replication factor A1 D Other NER factors E DSM1535_1543 lig; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E DSM1535_1230 Replication factor-A domain-containing protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E DSM1535_1197 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E DSM1535_1543 lig; DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E DSM1535_1230 Replication factor-A domain-containing protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D DSM1535_1197 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D DSM1535_1408 deoxyribonuclease v K21813 ENDOV; endonuclease V [EC:3.1.26.-] C Helicases C PSO4 complex C Modulation of nucleotide pools D DSM1535_1200 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DSM1535_1785 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DSM1535_0652 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DSM1535_0756 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DSM1535_0049 phr; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DSM1535_0459 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E DSM1535_1050 mutM3; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DSM1535_0629 mutM1; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DSM1535_1672 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DSM1535_1560 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DSM1535_1565 xylose isomerase domain-containing protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E DSM1535_1325 phosphoesterase RecJ domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DSM1535_2314 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E DSM1535_2101 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E DSM1535_2100 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E DSM1535_2098 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E DSM1535_1816 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DSM1535_0696 DNA mismatch repair protein MutS domain-containing protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E DSM1535_1816 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DSM1535_0479 mjaIIIM; Modification methylase MjaIII K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DSM1535_0169 DNA double-strand break repair rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E DSM1535_0168 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DSM1535_1892 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DSM1535_1848 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DSM1535_1325 phosphoesterase RecJ domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DSM1535_2314 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E DSM1535_0083 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E DSM1535_1231 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E DSM1535_0605 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E DSM1535_0981 Holliday junction-type resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E DSM1535_0169 DNA double-strand break repair rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E DSM1535_0168 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E DSM1535_0167 putative protein MJ1565 K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E DSM1535_0166 NurA domain-containing protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] E DSM1535_2163 putative ski2-type helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E DSM1535_2283 Ku domain-containing protein K10979 ku; DNA end-binding protein Ku D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DSM1535_0670 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DSM1535_1325 phosphoesterase RecJ domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DSM1535_2314 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F DSM1535_2101 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F DSM1535_2100 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D DSM1535_2137 PHP domain-containing protein K02347 polX; DNA polymerase (family X) C DNA helicases D DSM1535_1862 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DSM1535_1264 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DSM1535_2120 putative ATP-dependent helicase MTH_1802 K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D DSM1535_1200 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DSM1535_1785 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DSM1535_0652 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D DSM1535_0115 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024