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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transfer RNA Biogenesis - Methanoregula formicica</h2>
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A<b>Eukaryotic type</b>
B  5'processing factors
C    Ribonucrease P
D      Metfor_2647 RNase P/RNase MRP subunit p29	K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] 
D      Metfor_1159 RNase P/RNase MRP subunit POP5	K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] 
D      Metfor_1158 RNase P/RNase MRP subunit p30	K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] 
D      Metfor_1086 RNase P subunit RPR2	K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] 
B  3'processing and CCA adding factors
C    3'processing factors
D      Metfor_1625 ribonuclease Z	K00784 rnz; ribonuclease Z [EC:3.1.26.11] 
C    CCA adding factors
B  tRNA spricing factors
C    tRNA splicing endonuclease complex
C    tRNA splicing ligase complex
D      Metfor_1326 hypothetical protein	K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] 
D      Metfor_1327 hypothetical protein	K24956 ZBTB8OS; protein archease 
C    Other tRNA splicing factors
B  tRNA transport factors
C    tRNA export factors
D      Metfor_2512 translation elongation factor EF-1 alpha	K03231 EEF1A; elongation factor 1-alpha 
C    tRNA import factors
B  Aminoacyl-tRNA synthetases (AARSs)
C    Multi-aminoacyl-tRNA synthetase complex (MSC)
D      Metfor_0500 glutamyl-tRNA synthetase, archaeal and eukaryotic family	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] 
D      Metfor_0989 prolyl-tRNA synthetase, family I	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] 
D      Metfor_0393 isoleucyl-tRNA synthetase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] 
D      Metfor_1041 leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] 
D      Metfor_1266 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] 
D      Metfor_2841 arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] 
D      Metfor_0330 lysyl-tRNA synthetase (class II)	K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] 
C    Other AARSs
D      Metfor_2041 alanine--tRNA ligase/alanyl-tRNA synthetase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] 
D      Metfor_2218 glycyl-tRNA synthetase, dimeric type	K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] 
D      Metfor_2142 threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] 
D      Metfor_1727 seryl-tRNA synthetase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] 
D      Metfor_2466 cysteinyl-tRNA synthetase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] 
D      Metfor_1278 valyl-tRNA synthetase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] 
D      Metfor_1292 histidyl-tRNA synthetase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] 
D      Metfor_2550 phenylalanyl-tRNA synthetase, alpha subunit	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] 
D      Metfor_2549 phenylalanyl-tRNA synthetase, beta subunit	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] 
D      Metfor_0185 tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] 
D      Metfor_2551 tryptophanyl-tRNA synthetase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] 
C    Trans-editing factors
D      Metfor_0400 hypothetical protein	K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] 
C    AARS associated factors
B  tRNA modification factors
C    Deaminases
C    Dihydorouridine synthases
C    Methylthiotransferase
D      Metfor_2686 MiaB-like tRNA modifying enzyme	K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] 
C    Methyltransferases
D      Metfor_1131 tRNA(guanine-26,N2-N2) methyltransferase	K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] 
D      Metfor_0026 putative methyltransferase	K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] 
D      Metfor_2209 putative methyltransferase	K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] 
D      Metfor_1148 tRNA(1-methyladenosine) methyltransferase-like methyltransferase	K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] 
D      Metfor_0931 putative methyltransferase, YaeB/AF_0241 family	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] 
D      Metfor_0980 putative methyltransferase, YaeB/AF_0241 family	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] 
D      Metfor_2816 putative methyltransferase, YaeB/AF_0241 family	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] 
D      Metfor_0616 putative methyltransferase, YaeB/AF_0241 family	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] 
D      Metfor_2842 wyosine biosynthesis protein TYW1	K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] 
D      Metfor_1346 putative methyltransferase	K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114] 
C    Psudouridine synthases
D      Metfor_2897 pseudouridylate synthase I	K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] 
D      Metfor_2674 rRNA pseudouridine synthase, putative	K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] 
D      Metfor_2278 tRNA pseudouridine synthase, TruD family	K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] 
D      Metfor_1111 TIGR01213 family protein	K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] 
C    Thiolation factors
D      Metfor_2456 cysteine desulfurase NifS	K04487 iscS; cysteine desulfurase [EC:2.8.1.7] 
C    KEOPS/EKC complex
C    Elongator complex
D      Metfor_0996 histone acetyltransferase, ELP3 family	K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] 
C    Elongator related proteins
C    Other tRNA modification factors
D      Metfor_0970 Sua5/YciO/YrdC/YwlC family protein	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] 
D      Metfor_0392 hypothetical protein	K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79] 
B  tRNA degradation factors
C    TRAMP complex
C    Rapid tRNA decay (RTD) pathway factors
C    Other tRNA degradation factors
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A<b>Prokaryotic type</b>
B  5'processing factors
C    Ribonucrease P
D      Metfor_1668 Archaeal RNase P	K01978 rnpB; M1 RNA 
B  3'processing and CCA adding factors
C    3'processing factors
D      Metfor_1625 ribonuclease Z	K00784 rnz; ribonuclease Z [EC:3.1.26.11] 
C    CCA adding factors
D      Metfor_1190 CCA-adding enzyme	K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] 
B  tRNA spricing factors
C    tRNA splicing endonucleases
D      Metfor_2552 tRNA intron endonuclease	K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] 
C    tRNA splicing ligases
D      Metfor_1326 hypothetical protein	K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] 
C    Other tRNA splicing factors
D      Metfor_1189 2'-5' RNA ligase	K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] 
B  tRNA transport factors
C    tRNA export factors
B  Aminoacyl-tRNA synthetases (AARSs)
C    Multi-aminoacyl-tRNA synthetase complex (MSC)
D      Metfor_1041 leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] 
D      Metfor_0989 prolyl-tRNA synthetase, family I	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] 
C    Other AARSs
D      Metfor_0185 tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] 
D      Metfor_2551 tryptophanyl-tRNA synthetase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] 
D      Metfor_2142 threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] 
D      Metfor_0393 isoleucyl-tRNA synthetase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] 
D      Metfor_0330 lysyl-tRNA synthetase (class II)	K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] 
D      Metfor_2041 alanine--tRNA ligase/alanyl-tRNA synthetase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] 
D      Metfor_1278 valyl-tRNA synthetase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] 
D      Metfor_1266 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] 
D      Metfor_1727 seryl-tRNA synthetase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] 
D      Metfor_2466 cysteinyl-tRNA synthetase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] 
D      Metfor_0500 glutamyl-tRNA synthetase, archaeal and eukaryotic family	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] 
D      Metfor_2841 arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] 
D      Metfor_2550 phenylalanyl-tRNA synthetase, alpha subunit	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] 
D      Metfor_2549 phenylalanyl-tRNA synthetase, beta subunit	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] 
D      Metfor_1292 histidyl-tRNA synthetase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] 
D      Metfor_0232 aspartyl-tRNA synthetase, archaeal type	K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] 
D      Metfor_2843 O-phosphoseryl-tRNA(Cys) synthetase	K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27] 
D      Metfor_1987 Sep-tRNA:Cys-tRNA synthase	K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73] 
D      Metfor_2473 Sep-tRNA:Cys-tRNA synthase	K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73] 
C    Trans-editing factors
D      Metfor_0400 hypothetical protein	K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] 
B  tRNA modification factors
C    Deaminases
C    Dihydorouridine synthases
C    Methylthiotransferases
C    Methyltransferases
D      Metfor_0045 methylase involved in ubiquinone/menaquinone biosynthesis	K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] 
D      Metfor_2141 RNA methyltransferase, TrmH family, group 1	K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] 
D      Metfor_0931 putative methyltransferase, YaeB/AF_0241 family	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] 
D      Metfor_0980 putative methyltransferase, YaeB/AF_0241 family	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] 
D      Metfor_2816 putative methyltransferase, YaeB/AF_0241 family	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] 
D      Metfor_0616 putative methyltransferase, YaeB/AF_0241 family	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] 
D      Metfor_1110 hypothetical protein	K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] 
D      Metfor_1651 putative DNA modification methylase	K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] 
D      Metfor_2030 hypothetical protein	K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] 
C    Psudouridine synthases
D      Metfor_2897 pseudouridylate synthase I	K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] 
D      Metfor_2674 rRNA pseudouridine synthase, putative	K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] 
D      Metfor_2278 tRNA pseudouridine synthase, TruD family	K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] 
C    Thiolation factors
D      Metfor_2456 cysteine desulfurase NifS	K04487 iscS; cysteine desulfurase [EC:2.8.1.7] 
C    KEOPS/EKC complex
D      Metfor_2873 metallohydrolase, glycoprotease/Kae1 family	K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1] 
D      Metfor_0181 hypothetical protein	K09119 cgi121; KEOPS complex subunit Cgi121 
D      Metfor_1164 hypothetical protein	K09741 pcc1; KEOPS complex subunit Pcc1 
C    Other tRNA modification factors
D      Metfor_2837 queuosine biosynthesis protein QueC	K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] 
D      Metfor_2835 6-pyruvoyl-tetrahydropterin synthase	K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] 
D      Metfor_2836 organic radical activating enzyme	K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] 
D      Metfor_2229 putative Fe-S protein	K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] 
D      Metfor_1670 tRNA-guanine transglycosylase	K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] 
D      Metfor_2004 thiazole biosynthesis/tRNA modification protein ThiI	K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] 
D      Metfor_2478 thiazole biosynthesis/tRNA modification protein ThiI	K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] 
D      Metfor_2916 putative DNA-binding protein containing a Zn-ribbon domain	K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] 
D      Metfor_0970 Sua5/YciO/YrdC/YwlC family protein	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] 
B  tRNA degradation factors
C    Metfor_2808 exoribonuclease R	K12573 rnr; ribonuclease R [EC:3.1.13.1] 
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#Last updated: February 29, 2024