+F Repair protein KO
#
DNA Repair and Recombination Proteins - Pyricularia oryzae
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MGG_02429 RING-2 protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D MGG_06836 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MGG_03632 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E MGG_11518 G/U mismatch-specific uracil DNA glycosylase K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E MGG_00347 N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E MGG_06014 DNA repair protein Ntg1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E MGG_02302 HhH-GPD family base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E MGG_10609 DNA-(apurinic or apyrimidinic site) lyase 1 K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E MGG_02980 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F MGG_08071 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F MGG_02459 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F MGG_04127 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F MGG_06731 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F MGG_03850 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F MGG_07222 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
E MGG_00518 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E MGG_03419 DNA-repair protein rad2 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E MGG_06370 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E MGG_06176 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E MGG_07058 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E MGG_09734 bifunctional polynucleotide phosphatase/kinase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E MGG_08613 polymerase 2 ADP-ribosyltransferase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F MGG_01699 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F MGG_17634 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F MGG_01656 UV excision repair protein Rad23 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F MGG_08844 RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F MGG_14763 Cullin-4B K10609 CUL4; cullin 4
F MGG_16867 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F MGG_07015 DNA repair protein Rad7 K15082 RAD7; DNA repair protein RAD7
F MGG_07014 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F MGG_04652 DNA-directed RNA polymerase II largest subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F MGG_04714 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F MGG_03215 DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F MGG_04508 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F MGG_06083 DNA-directed RNA polymerase I K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F MGG_05321 DNA-directed RNA polymerase I K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F MGG_17442 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F MGG_07080 UDP-glucose 4-epimerase Gal10 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F MGG_07391 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F MGG_15646 DNA-directed RNA polymerase N/8 kDa subunit K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F MGG_02463 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F MGG_11667 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F MGG_08844 RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F MGG_14763 Cullin-4B K10609 CUL4; cullin 4
F MGG_16867 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F MGG_12329 DNA excision repair protein ERCC-8 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F MGG_05239 DNA repair and recombination protein RAD26 K10841 ERCC6; DNA excision repair protein ERCC-6
F MGG_06916 transcription elongation factor K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E MGG_06470 DNA repair helicase RAD25 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E MGG_03132 DNA repair helicase rad15 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E MGG_03192 RNA polymerase II transcription factor B subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E MGG_06690 RNA polymerase TFIIH complex subunit Ssl1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E MGG_03877 RNA polymerase II transcription factor B subunit 4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E MGG_00397 RNA polymerase II transcription factor B subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E MGG_15089 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E MGG_13401 CMGC/CDK/CDK7 protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E MGG_15176 cyclin-H K06634 CCNH; cyclin H
E MGG_03605 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E MGG_00685 replication factor-A protein 1 K07466 RFA1; replication factor A1
E MGG_07124 replication protein A 32 kDa subunit K10739 RFA2; replication factor A2
E MGG_04010 hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E MGG_06208 DNA repair protein RAD14 K10847 XPA; DNA-repair protein complementing XP-A cells
E MGG_14640 mating-type switching protein swi10 K10849 ERCC1; DNA excision repair protein ERCC-1
E MGG_02804 DNA repair protein rad16 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E MGG_00155 DNA-repair protein rad13 K10846 ERCC5; DNA excision repair protein ERCC-5
E MGG_06370 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E MGG_10833 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E MGG_07731 Cullin-3 K03869 CUL3; cullin 3
E MGG_03902 hypothetical protein K03872 ELOC; elongin-C
E MGG_09888 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E MGG_00879 DNA mismatch repair protein msh-2 K08735 MSH2; DNA mismatch repair protein MSH2
E MGG_09306 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E MGG_00704 DNA mismatch repair protein msh6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E MGG_07121 DNA mismatch repair protein mutL K08734 MLH1; DNA mismatch repair protein MLH1
E MGG_15760 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E MGG_03284 DNA mismatch repair protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E MGG_08071 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E MGG_02459 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E MGG_04127 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E MGG_06731 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E MGG_00685 replication factor-A protein 1 K07466 RFA1; replication factor A1
E MGG_07124 replication protein A 32 kDa subunit K10739 RFA2; replication factor A2
E MGG_04010 hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E MGG_03204 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E MGG_04389 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E MGG_07526 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E MGG_13023 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E MGG_03202 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E MGG_00518 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E MGG_00841 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E MGG_06370 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E MGG_09555 double-strand break repair protein mus-23 K10865 MRE11; double-strand break repair protein MRE11
E MGG_11387 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E MGG_09555 double-strand break repair protein mus-23 K10865 MRE11; double-strand break repair protein MRE11
E MGG_11387 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E MGG_15576 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E MGG_15576 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E MGG_06985 hypothetical protein K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E MGG_08585 DNA repair and recombination protein rhm52 K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E MGG_03549 DNA repair protein rhp54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E MGG_05700 RecQ helicase MUSN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E MGG_03233 ATP-dependent DNA helicase recQ K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E MGG_05700 RecQ helicase MUSN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E MGG_03233 ATP-dependent DNA helicase recQ K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E MGG_11342 DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E MGG_03268 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E MGG_00685 replication factor-A protein 1 K07466 RFA1; replication factor A1
E MGG_07124 replication protein A 32 kDa subunit K10739 RFA2; replication factor A2
E MGG_04010 hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E MGG_06138 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E MGG_12590 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E MGG_15281 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E MGG_01429 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E MGG_01042 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E MGG_03068 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E MGG_02428 hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E MGG_04585 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E MGG_05064 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E MGG_13509 hypothetical protein K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E MGG_04879 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E MGG_01800 flap structure-specific endonuclease K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E MGG_06717 hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1
E MGG_09557 vacuolar protein sorting-associated protein 4 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E MGG_01341 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E MGG_04429 ATP-dependent DNA helicase MPH1 K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E MGG_01512 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E MGG_10157 hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E MGG_09555 double-strand break repair protein mus-23 K10865 MRE11; double-strand break repair protein MRE11
E MGG_11387 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E MGG_12899 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E MGG_10627 ATP-dependent DNA ligase domain-containing protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E MGG_06908 DNA polymerase beta K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E MGG_04577 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E MGG_07058 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E MGG_00571 hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E MGG_15064 hypothetical protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E MGG_05700 RecQ helicase MUSN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E MGG_03233 ATP-dependent DNA helicase recQ K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E MGG_11342 DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E MGG_03268 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E MGG_00351 coiled-coil domain-containing protein MTMR15 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E MGG_15576 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E MGG_09282 hypothetical protein K11137 TELO2; telomere length regulation protein
E MGG_01074 WD repeat-containing protein 5B K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E MGG_01406 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E MGG_06387 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D MGG_02924 sister chromatid cohesion protein Eso1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D MGG_01089 DNA polymerase iota K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D MGG_07238 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D MGG_00485 DNA polymerase IV K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D MGG_02986 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D MGG_01756 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D MGG_04175 DNA repair protein rad18 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D MGG_05032 DNA repair protein RAD5 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D MGG_06094 DNA repair protein RAD5 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D MGG_11047 DNA repair and recombination protein RAD5C K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D MGG_07914 hypothetical protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D MGG_02568 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D MGG_00518 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D MGG_00866 HMG box-containing protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D MGG_05278 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D MGG_12138 checkpoint protein hus1 K10903 HUS1; HUS1 checkpoint protein
D MGG_17052 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D MGG_15566 hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D MGG_04389 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D MGG_07526 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D MGG_13023 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D MGG_03202 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D MGG_17052 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D MGG_03991 topoisomerase 1-associated factor 1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D MGG_09005 chromosome segregation in meiosis protein 3 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D MGG_01813 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D MGG_09282 hypothetical protein K11137 TELO2; telomere length regulation protein
D MGG_08863 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D MGG_03163 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D MGG_08069 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D MGG_02656 protein kinase rad3 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D MGG_14764 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D MGG_03729 CAMK/CAMKL/CHK1 protein kinase K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D MGG_01596 CAMK/RAD53 protein kinase K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D MGG_07734 M-phase inducer phosphatase K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D MGG_01588 14-3-3 family protein K06630 YWHAE; 14-3-3 protein epsilon
D MGG_13806 14-3-3 family protein K06630 YWHAE; 14-3-3 protein epsilon
D MGG_01816 WEE protein kinase K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D MGG_06258 forkhead box protein J2 K24664 FKH; forkhead protein FKH
D MGG_07916 vacuolar protein sorting-associated protein 4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D MGG_01112 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D MGG_07728 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D MGG_11590 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D MGG_00297 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D MGG_02853 nuclease PA3 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D MGG_06945 helicase K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D MGG_03116 spliceosome component K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D MGG_01426 pre-mRNA-splicing factor CEF1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D MGG_07336 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D MGG_05616 pre-mRNA-splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D MGG_09400 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGG_17439 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MGG_07000 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D MGG_06408 ribonucleoside-diphosphate reductase small subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MGG_02429 RING-2 protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D MGG_06836 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MGG_03632 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E MGG_06190 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E MGG_11447 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E MGG_06014 DNA repair protein Ntg1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E MGG_02302 HhH-GPD family base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E MGG_00630 ATP-dependent DNA helicase srs2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E MGG_00630 ATP-dependent DNA helicase srs2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D MGG_09400 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MGG_17439 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024