+E Transcription factors KO #

  Transcription Factors - Magnetospirillum gryphiswaldense MSR-1

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D MSR1_33370 haeIIIM; Modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family D MSR1_27710 gcvA; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D MSR1_21030 oxyR_2; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D MSR1_39690 oxyR_3; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D MSR1_19770 dmlR_3; HTH-type transcriptional regulator DmlR K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D MSR1_28510 cysL; HTH-type transcriptional regulator CysL K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family C LacI family C GntR family D MSR1_00870 phnF; putative transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D MSR1_01970 lldR; Putative L-lactate dehydrogenase operon regulatory protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D MSR1_00820 acuR; Transcriptional regulator AcuR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D MSR1_25390 mtrR; HTH-type transcriptional regulator MtrR K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor C Lrp/AsnC family C LuxR family D MSR1_08730 DNA-binding transcriptional activator SdiA K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D MSR1_16350 luxR_1; Transcriptional activator protein LuxR K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids C MarR family D MSR1_06900 marR; Multiple antibiotic resistance protein MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D MSR1_02450 ohrR; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D MSR1_13860 hmrR; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D MSR1_28680 fur_1; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D MSR1_21310 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D MSR1_28780 fur_2; Ferric uptake regulation protein K09826 irr; Fur family transcriptional regulator, iron response regulator D MSR1_05940 perR_1; Peroxide-responsive repressor PerR K09826 irr; Fur family transcriptional regulator, iron response regulator D MSR1_27890 perR_2; Peroxide-responsive repressor PerR K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family C CRP/FNR family D MSR1_05210 crp_2; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MSR1_19150 crp_7; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MSR1_14800 fnr_1; Anaerobic regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MSR1_15370 crp_5; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MSR1_32280 crp_8; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MSR1_34930 Cyclic nucleotide-gated potassium channel K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MSR1_12410 crp_4; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MSR1_34230 aadR_2; Transcriptional activatory protein AadR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D MSR1_10440 ntcA_1; Global nitrogen regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D MSR1_17610 fnr_2; Anaerobic regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D MSR1_01920 crp_1; cAMP receptor protein K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB D MSR1_19310 ntcA_2; Global nitrogen regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D MSR1_08370 crp_3; cAMP receptor protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D MSR1_08380 aadR_1; Transcriptional activatory protein AadR K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D MSR1_08530 iscR_1; HTH-type transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D MSR1_19670 nsrR_2; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D MSR1_14420 nsrR_1; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D MSR1_09650 cymR_1; HTH-type transcriptional regulator CymR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D MSR1_21150 cadC; Cadmium resistance transcriptional regulatory protein CadC K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D MSR1_24410 Helix-turn-helix domain protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D MSR1_09820 bigR; Biofilm growth-associated repressor K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D MSR1_36540 ygaV; putative HTH-type transcriptional regulator YgaV K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D MSR1_09540 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D MSR1_33710 acoR; Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D MSR1_18580 nifA; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein D MSR1_26010 mopA; Molybdenum-pterin-binding protein MopA K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D MSR1_37990 rcoM; CO-responsive transcriptional regulator RcoM K21696 rcoM; LytTR family transcriptional regulator, CO-responsive transcriptional regulator RcoM D MSR1_23240 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D MSR1_37250 spo0C; Chromosome-partitioning protein Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MSR1_30530 parB; Chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MSR1_28550 carD; RNA polymerase-binding transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D MSR1_34510 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D MSR1_10460 formyltetrahydrofolate deformylase K03567 gcvR; glycine cleavage system transcriptional repressor D MSR1_32480 paaX; Transcriptional repressor PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D MSR1_08890 Prophage CP4-57 regulatory protein (AlpA) K07733 alpA; prophage regulatory protein D MSR1_22930 paiB; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator D MSR1_23370 hypothetical protein K07735 algH; putative transcriptional regulator D MSR1_21050 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D MSR1_10870 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D MSR1_38260 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0