+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mycoplasmoides gallisepticum NY01_2001.047-5-1P

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E HFMG01NYA_4805 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HFMG01NYA_1706 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E HFMG01NYA_4805 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HFMG01NYA_1994 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D AP endonucleases E HFMG01NYA_2806 nfo; Endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E HFMG01NYA_5396 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E HFMG01NYA_0626 uvrA; excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A E HFMG01NYA_0277 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E HFMG01NYA_2710 hrcA; Heat-inducible transcription repressor hrcA K03703 uvrC; excinuclease ABC subunit C E HFMG01NYA_2907 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HFMG01NYA_5396 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HFMG01NYA_1742 rpoB; DNA-directed RNA polymerase subunit beta (RNAP subunit beta) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HFMG01NYA_1764 rpoC; DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HFMG01NYA_4890 rpoA; DNA-directed RNA polymerase subunit alpha (RpoA) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HFMG01NYA_5097 rpoE; DNA-directed RNA polymerase subunit delta (RpoE) K03048 rpoE; DNA-directed RNA polymerase subunit delta E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E HFMG01NYA_1975 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HFMG01NYA_0674 polC; DNA polymerase III alpha subunit polC/Gram positive-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E HFMG01NYA_5632 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HFMG01NYA_4406 putative DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HFMG01NYA_5571 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HFMG01NYA_4744 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HFMG01NYA_5396 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HFMG01NYA_2907 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HFMG01NYA_4831 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HFMG01NYA_3625 recA; RecA (Recombinase A) K03553 recA; recombination protein RecA E HFMG01NYA_4763 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E HFMG01NYA_4757 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HFMG01NYA_2584 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E HFMG01NYA_3625 recA; RecA (Recombinase A) K03553 recA; recombination protein RecA E HFMG01NYA_2976 putative recombinational DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HFMG01NYA_4733 recR; Recombination protein recR K06187 recR; recombination protein RecR E HFMG01NYA_1053 recU; Holliday junction resolvase recU (Recombination protein U-like protein) K03700 recU; recombination protein U E HFMG01NYA_4763 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E HFMG01NYA_4757 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins D Other HR factor E HFMG01NYA_5197 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E HFMG01NYA_2584 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HFMG01NYA_5601 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HFMG01NYA_5616 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HFMG01NYA_4942 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HFMG01NYA_1058 himA_hup; Histone-like DNA-binding superfamily protein HimA/HU/Integration host factor K03530 hupB; DNA-binding protein HU-beta F HFMG01NYA_3149 himA_hup; histone-like DNA-binding superfamily protein HimA/HU/Integration host factor K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HFMG01NYA_2976 putative recombinational DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HFMG01NYA_4733 recR; Recombination protein recR K06187 recR; recombination protein RecR F HFMG01NYA_5396 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F HFMG01NYA_0626 uvrA; excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A F HFMG01NYA_0277 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HFMG01NYA_4447 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D HFMG01NYA_3625 recA; RecA (Recombinase A) K03553 recA; recombination protein RecA D HFMG01NYA_4831 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D HFMG01NYA_1706 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HFMG01NYA_0329 nrdA; Ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HFMG01NYA_0341 nrdF; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D HFMG01NYA_0266 exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D HFMG01NYA_3790 phosphodiesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024