+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mannheimia haemolytica D171

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D J450_11435 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E J450_11160 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E J450_07685 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E J450_11510 endonuclease IV K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D J450_02565 nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D J450_08440 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D J450_11435 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E J450_11160 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E J450_07685 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E J450_05565 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E J450_05040 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E J450_11510 endonuclease IV K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E J450_03695 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E J450_11140 endonuclease V K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E J450_01500 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E J450_03610 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E J450_01970 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E J450_00035 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E J450_00545 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E J450_10855 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E J450_04380 uvrD; DNA-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E J450_01970 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E J450_03610 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F J450_06030 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F J450_06020 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F J450_08045 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F J450_08885 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F J450_09450 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E J450_06665 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E J450_05020 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E J450_10785 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E J450_00505 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E J450_12015 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E J450_02940 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E J450_04485 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E J450_05170 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E J450_11570 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E J450_05895 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E J450_10025 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E J450_05325 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D DNA ligase E J450_03610 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E J450_04380 uvrD; DNA-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E J450_04145 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E J450_00030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E J450_03310 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E J450_11205 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E J450_08375 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E J450_03195 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E J450_04330 recombinase RecA K03553 recA; recombination protein RecA E J450_03375 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E J450_03380 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E J450_09675 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E J450_04045 endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E J450_03135 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E J450_10010 primosomal replication protein N K02686 priB; primosomal replication protein N E J450_00505 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E J450_04330 recombinase RecA K03553 recA; recombination protein RecA E J450_11535 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E J450_03450 recF; recombinase F K03629 recF; DNA replication and repair protein RecF E J450_06140 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E J450_06960 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E J450_05480 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E J450_01500 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E J450_02205 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E J450_03440 recR; recombinase RecR K06187 recR; recombination protein RecR E J450_04915 recombinase K03631 recN; DNA repair protein RecN (Recombination protein N) E J450_04690 DNA recombinase K03554 rdgC; recombination associated protein RdgC E J450_03375 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E J450_03380 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E J450_09675 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E J450_02035 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E J450_02195 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F J450_10240 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F J450_02095 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F J450_00595 topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F J450_04780 transcriptional regulator K05787 hupA; DNA-binding protein HU-alpha D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F J450_01865 hypothetical protein K07455 recT; recombination protein RecT F J450_01500 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F J450_02205 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F J450_03440 recR; recombinase RecR K06187 recR; recombination protein RecR F J450_03610 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F J450_03485 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F J450_01245 transcriptional regulator K04764 ihfA; integration host factor subunit alpha F J450_01220 transcriptional regulator K05788 ihfB; integration host factor subunit beta E Supressor F J450_00505 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F J450_10875 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F J450_00035 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F J450_00545 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F J450_02000 DNA-binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D J450_09720 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D J450_04330 recombinase RecA K03553 recA; recombination protein RecA D J450_10790 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D J450_04915 recombinase K03631 recN; DNA repair protein RecN (Recombination protein N) D J450_04145 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J450_00030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J450_09230 antirepressor K14623 dinD; DNA-damage-inducible protein D D J450_04335 recombination protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D J450_03790 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D J450_00065 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D J450_02565 nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D J450_08440 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D J450_00990 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D J450_09380 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D J450_00985 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D J450_09385 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024