+E Transcription factors KO
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Transcription Factors - Mannheimia haemolytica 89010807N
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D WC39_07655 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D WC39_09925 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
C LysR family
D WC39_02795 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D WC39_09640 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D WC39_08565 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D WC39_12010 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D WC39_02815 cysB; CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D WC39_07290 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D WC39_12940 cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
C DeoR family
D WC39_05145 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D WC39_13650 DeoR faimly transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D WC39_13520 srlR; transcriptional regulator K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D WC39_00955 transcriptional regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D WC39_12960 XylR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D WC39_11470 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D WC39_07420 PurR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D WC39_11795 sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D WC39_08485 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D WC39_12955 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D WC39_09670 fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D WC39_00575 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D WC39_01475 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D WC39_08225 tetracycline repressor protein TetR K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D WC39_06515 AcrR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D WC39_12265 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D WC39_12015 GntR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D WC39_00110 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D WC39_07245 hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D WC39_03415 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
C MerR family
D WC39_04330 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D WC39_08255 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D WC39_08270 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D WC39_02955 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D WC39_02665 transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D WC39_12275 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D WC39_06455 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D WC39_08930 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
C XRE family
C PadR family
C Other families
D WC39_12285 biotin synthase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D WC39_03615 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D WC39_05610 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D WC39_13470 Nlp family transcriptional regulator K07724 ner; Ner family transcriptional regulator
D WC39_10940 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D WC39_12450 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D WC39_00050 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D WC39_11615 transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D WC39_13475 transcriptional regulator K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D WC39_00905 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D WC39_05445 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D WC39_12065 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D WC39_12365 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
D WC39_04150 transcription antiterminator BglG K03491 licR; probable licABCH operon transcriptional regulator
C Others
D WC39_04715 BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D WC39_12700 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D WC39_12695 RepB plasmid partition K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D WC39_03020 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D WC39_07255 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D WC39_13490 mannitol operon repressor K02562 mtlR; mannitol operon repressor
D WC39_06130 transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D WC39_09435 uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D WC39_07460 DNA-binding protein K07733 alpA; prophage regulatory protein
D WC39_07485 transcriptional regulator K07733 alpA; prophage regulatory protein
D WC39_04695 hypothetical protein K07735 algH; putative transcriptional regulator
D WC39_03560 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D WC39_07715 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D WC39_04535 regulatory protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D WC39_02585 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0