+F Repair protein KO #

  DNA Repair and Recombination Proteins - Marinobacter nauticus ATCC 49840

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MARHY0885 phrB; deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D MARHY3043 phr; Deoxyribodipyrimidine photo-lyase (DNA photolyase) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MARHY0948 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MARHY3116 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MARHY2356 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E MARHY0016 putative DEXDc2:Helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors E MARHY1791 conserved hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-] C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MARHY0804 conserved hypothetical protein; mutator mutT domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MARHY2001 NUDIX hydrolase (modular protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MARHY3462 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MARHY2884 ada; bifunctional: transcriptional regulator of DNA repair (AraC/Xyl family) (N-terminal); O6-methylguanine-DNA methyltransferase (EC 2.1.1.63) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D MARHY0885 phrB; deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D MARHY3043 phr; Deoxyribodipyrimidine photo-lyase (DNA photolyase) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D MARHY3040 conserved hypothetical protein, putative Deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D MARHY1189 alkB; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E MARHY0948 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MARHY3116 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MARHY0150 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MARHY3653 mutM; formamidopyrimidine DNA glycosylase, also acts on 5-formyluracil and 5-hydroxymethyluracil K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MARHY2356 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MARHY0463 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MARHY1781 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E MARHY0945 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E MARHY2111 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MARHY0456 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MARHY0611 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A E MARHY2246 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B E MARHY2071 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C E MARHY3548 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MARHY3560 conserved hypothetical protein,superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MARHY0456 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7] E MARHY2111 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MARHY0575 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MARHY0576 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MARHY0609 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MARHY0468 rpoZ; RNA polymerase, omega subunit,chaperone-like function in RNAP assembly and stabilization K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MARHY1372 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MARHY1206 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E MARHY2659 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E MARHY2525 sbcB; Exodeoxyribonuclease I, Exonuclease I, DNA deoxyribophosphodiesterase, dRPase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E MARHY1580 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MARHY0810 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MARHY2372 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MARHY0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MARHY2326 putative DNA polymerase III subunit chi, putatvie holC gene K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E MARHY2634 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MARHY1710 putative DNA polymerase III, delta prime subunit(holB) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MARHY0208 3'-5' exonuclease/DnaQ family enzyme K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MARHY2387 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MARHY1754 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MARHY3165 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MARHY1671 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MARHY2111 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MARHY3548 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MARHY3560 conserved hypothetical protein,superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MARHY0613 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein E MARHY2922 dam; N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72] E MARHY3710 vsr; DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MARHY0011 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E MARHY0012 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E MARHY0010 recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E MARHY1211 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E MARHY1590 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA E MARHY1591 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MARHY1589 ruvC; component of RuvABC resolvasome, endonuclease(Holliday junction nuclease) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E MARHY0692 priA; primosomal protein N' (factor Y) directs replication fork assembly at D-loops, ATP-dependent K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E MARHY2525 sbcB; Exodeoxyribonuclease I, Exonuclease I, DNA deoxyribophosphodiesterase, dRPase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E MARHY2408 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E MARHY1211 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E MARHY0709 radA; putative ATP-dependent protease, with nucleoside triP hydrolase and multiheme cytochrome domains, DNA repair protein K04485 radA; DNA repair protein RadA/Sms E MARHY0004 recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03629 recF; DNA replication and repair protein RecF E MARHY0473 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MARHY0945 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MARHY0984 recO; DNA gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E MARHY1673 recR; Recombination protein recR K06187 recR; recombination protein RecR E MARHY3207 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E MARHY2422 rdgC; DNA-binding protein, non-specific K03554 rdgC; recombination associated protein RdgC E MARHY1590 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA E MARHY1591 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MARHY1589 ruvC; component of RuvABC resolvasome, endonuclease(Holliday junction nuclease) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E MARHY2888 putative yejH(yejI, yejJ), an ATP-dependent helicase with nucleoside triP hydrolase domain K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E MARHY2408 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MARHY2260 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MARHY0005 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MARHY2133 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MARHY3662 hup; DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha F MARHY1466 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MARHY0945 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MARHY0984 recO; DNA gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F MARHY1673 recR; Recombination protein recR K06187 recR; recombination protein RecR F MARHY2111 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F MARHY3332 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F MARHY1244 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha F MARHY2252 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F MARHY2525 sbcB; Exodeoxyribonuclease I, Exonuclease I, DNA deoxyribophosphodiesterase, dRPase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F MARHY1833 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MARHY0611 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A F MARHY2246 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MARHY0914 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D MARHY1211 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D MARHY1296 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D MARHY3207 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D MARHY2310 conserved hypothetical protein K14160 imuA; protein ImuA D MARHY2311 putative protein imuB, putative DNA repair K14161 imuB; protein ImuB D MARHY2312 Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D MARHY0613 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein D MARHY2407 conserved hypothetical protein, putative regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D MARHY0370 rep; Rep helicase, a single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D MARHY1875 Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D MARHY1699 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D MARHY0804 conserved hypothetical protein; mutator mutT domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MARHY2001 NUDIX hydrolase (modular protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MARHY3462 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MARHY3806 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MARHY2200 putative Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MARHY3805 nrdB; Ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024