+F Repair protein KO
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DNA Repair and Recombination Proteins - Marinobacter nauticus ATCC 49840
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MARHY0885 phrB; deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D MARHY3043 phr; Deoxyribodipyrimidine photo-lyase (DNA photolyase) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MARHY0948 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E MARHY3116 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E MARHY2356 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E MARHY0016 putative DEXDc2:Helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
E MARHY1791 conserved hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D MARHY0804 conserved hypothetical protein; mutator mutT domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MARHY2001 NUDIX hydrolase (modular protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MARHY3462 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MARHY2884 ada; bifunctional: transcriptional regulator of DNA repair (AraC/Xyl family) (N-terminal); O6-methylguanine-DNA methyltransferase (EC 2.1.1.63) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D MARHY0885 phrB; deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D MARHY3043 phr; Deoxyribodipyrimidine photo-lyase (DNA photolyase) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D MARHY3040 conserved hypothetical protein, putative Deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D MARHY1189 alkB; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E MARHY0948 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E MARHY3116 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E MARHY0150 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E MARHY3653 mutM; formamidopyrimidine DNA glycosylase, also acts on 5-formyluracil and 5-hydroxymethyluracil K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E MARHY2356 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E MARHY0463 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E MARHY1781 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E MARHY0945 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E MARHY2111 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E MARHY0456 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E MARHY0611 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A
E MARHY2246 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
E MARHY2071 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
E MARHY3548 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MARHY3560 conserved hypothetical protein,superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MARHY0456 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7]
E MARHY2111 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F MARHY0575 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F MARHY0576 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F MARHY0609 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F MARHY0468 rpoZ; RNA polymerase, omega subunit,chaperone-like function in RNAP assembly and stabilization K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F MARHY1372 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E MARHY1206 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E MARHY2659 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E MARHY2525 sbcB; Exodeoxyribonuclease I, Exonuclease I, DNA deoxyribophosphodiesterase, dRPase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E MARHY1580 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E MARHY0810 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E MARHY2372 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E MARHY0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E MARHY2326 putative DNA polymerase III subunit chi, putatvie holC gene K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E MARHY2634 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E MARHY1710 putative DNA polymerase III, delta prime subunit(holB) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E MARHY0208 3'-5' exonuclease/DnaQ family enzyme K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E MARHY2387 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E MARHY1754 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E MARHY3165 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E MARHY1671 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E MARHY2111 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E MARHY3548 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MARHY3560 conserved hypothetical protein,superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MARHY0613 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
E MARHY2922 dam; N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E MARHY3710 vsr; DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E MARHY0011 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E MARHY0012 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E MARHY0010 recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E MARHY1211 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
E MARHY1590 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA
E MARHY1591 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E MARHY1589 ruvC; component of RuvABC resolvasome, endonuclease(Holliday junction nuclease) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E MARHY0692 priA; primosomal protein N' (factor Y) directs replication fork assembly at D-loops, ATP-dependent K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E MARHY2525 sbcB; Exodeoxyribonuclease I, Exonuclease I, DNA deoxyribophosphodiesterase, dRPase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E MARHY2408 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
D RecFOR pathway proteins
E MARHY1211 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
E MARHY0709 radA; putative ATP-dependent protease, with nucleoside triP hydrolase and multiheme cytochrome domains, DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E MARHY0004 recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03629 recF; DNA replication and repair protein RecF
E MARHY0473 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E MARHY0945 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E MARHY0984 recO; DNA gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E MARHY1673 recR; Recombination protein recR K06187 recR; recombination protein RecR
E MARHY3207 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E MARHY2422 rdgC; DNA-binding protein, non-specific K03554 rdgC; recombination associated protein RdgC
E MARHY1590 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA
E MARHY1591 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E MARHY1589 ruvC; component of RuvABC resolvasome, endonuclease(Holliday junction nuclease) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E MARHY2888 putative yejH(yejI, yejJ), an ATP-dependent helicase with nucleoside triP hydrolase domain K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E MARHY2408 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F MARHY2260 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F MARHY0005 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F MARHY2133 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F MARHY3662 hup; DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
F MARHY1466 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F MARHY0945 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F MARHY0984 recO; DNA gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F MARHY1673 recR; Recombination protein recR K06187 recR; recombination protein RecR
F MARHY2111 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F MARHY3332 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F MARHY1244 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
F MARHY2252 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F MARHY2525 sbcB; Exodeoxyribonuclease I, Exonuclease I, DNA deoxyribophosphodiesterase, dRPase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F MARHY1833 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F MARHY0611 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A
F MARHY2246 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D MARHY0914 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D MARHY1211 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D MARHY1296 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D MARHY3207 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D MARHY2310 conserved hypothetical protein K14160 imuA; protein ImuA
D MARHY2311 putative protein imuB, putative DNA repair K14161 imuB; protein ImuB
D MARHY2312 Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D MARHY0613 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D MARHY2407 conserved hypothetical protein, putative regulatory protein recX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D MARHY0370 rep; Rep helicase, a single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D MARHY1875 Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D MARHY1699 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D MARHY0804 conserved hypothetical protein; mutator mutT domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MARHY2001 NUDIX hydrolase (modular protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MARHY3462 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MARHY3806 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D MARHY2200 putative Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D MARHY3805 nrdB; Ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024