+E Transcription factors KO
#
Transcription Factors - Mycolicibacter heraklionensis
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D K3U94_03485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D K3U94_07380 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D K3U94_11210 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D K3U94_06810 cynR; transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
C DeoR family
C LacI family
C GntR family
D K3U94_04030 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D K3U94_13165 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D K3U94_04305 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D K3U94_16075 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D K3U94_12190 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D K3U94_22730 TetR/AcrR family transcriptional regulator K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D K3U94_12595 TetR/AcrR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D K3U94_21095 kstR; cholesterol catabolism transcriptional regulator KstR K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D K3U94_23050 TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D K3U94_20955 kstR2; TetR family transcriptional regulator KstR2 K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D K3U94_19135 mftR; mycofactocin system transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system
D K3U94_13520 TetR/AcrR family transcriptional regulator K22295 K22295; TetR/AcrR family transcriptional regulator, repressor for neighboring sulfatase
D K3U94_18140 TetR/AcrR family transcriptional regulator; helix-turn-helix transcriptional regulator K22295 K22295; TetR/AcrR family transcriptional regulator, repressor for neighboring sulfatase
C Lrp/AsnC family
C LuxR family
C MarR family
C MerR family
D K3U94_01995 helix-turn-helix domain-containing protein K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D K3U94_17350 helix-turn-helix transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
C Fur family
D K3U94_08625 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
C CRP/FNR family
D K3U94_21610 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
D K3U94_00520 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D K3U94_10230 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D K3U94_19555 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D K3U94_11750 metalloregulator ArsR/SmtB family transcription factor K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D K3U94_08630 metalloregulator ArsR/SmtB family transcription factor K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D K3U94_06120 short-chain fatty acyl-CoA regulator family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D K3U94_02650 ramB; acetate metabolism transcriptional regulator RamB K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D K3U94_14065 helix-turn-helix domain-containing protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
C Other families
D K3U94_13885 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D K3U94_14445 mntR; manganese-binding transcriptional regulator MntR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D K3U94_11100 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D K3U94_17165 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D K3U94_22690 helix-turn-helix transcriptional regulator K27097 espR; ESX-1-secreted protein regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D K3U94_21640 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D K3U94_16705 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D K3U94_17030 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D K3U94_18175 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D K3U94_00190 WhiB family transcriptional regulator K18956 whiB5; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D K3U94_16575 WhiB family transcriptional regulator K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D K3U94_00975 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D K3U94_23370 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D K3U94_21145 carD; RNA polymerase-binding transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D K3U94_10375 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D K3U94_08515 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D K3U94_15620 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D K3U94_03845 PaaX domain-containing protein, C-domain protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D K3U94_13115 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D K3U94_23295 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D K3U94_13910 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D K3U94_09600 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0