+F Repair protein KO
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DNA Repair and Recombination Proteins - Mangifera indica (mango)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 123218013 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 123204124 DExH-box ATP-dependent RNA helicase DExH14 isoform X1 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 123220157 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 123207155 uracil-DNA glycosylase, mitochondrial-like isoform X1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 123217346 uracil-DNA glycosylase, mitochondrial-like isoform X1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 123227119 DNA-3-methyladenine glycosylase isoform X1 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 123196703 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 123204635 methyl-CpG-binding domain protein 4 isoform X1 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 123229750 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 123196640 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 123211453 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 123199209 DNA-(apurinic or apyrimidinic site) endonuclease 2 isoform X1 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 123199087 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 123205582 DNA polymerase delta catalytic subunit-like isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 123193836 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 123228037 DNA polymerase delta small subunit-like K02328 POLD2; DNA polymerase delta subunit 2
F 123195692 DNA polymerase delta subunit 3 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
F 123221028 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
F 123221030 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 123225819 DNA polymerase epsilon catalytic subunit A-like K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 123195969 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 123208753 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 123201687 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 123225574 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 123196930 flap endonuclease 1 isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 123207462 flap endonuclease 1-like isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 123220102 flap endonuclease 1-like isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 123209162 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 123212463 DNA-repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 123193130 tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 123223030 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 123225823 polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 123213995 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 123224080 poly [ADP-ribose] polymerase 1-like K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 123215939 poly [ADP-ribose] polymerase 2 isoform X1 K28005 PARP2; poly [ADP-ribose] polymerase 2 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 123198078 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 123197999 ubiquitin receptor RAD23c isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 123210368 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
F 123214664 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
F 123217352 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
F 123217889 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
F 123225517 ubiquitin receptor RAD23c-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 123193858 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 123200043 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 123193134 cullin-4-like K10609 CUL4; cullin 4
F 123218317 cullin-4-like K10609 CUL4; cullin 4
F 123205292 DNA damage-binding protein 1a-like K10610 DDB1; DNA damage-binding protein 1
F 123206299 DNA damage-binding protein 1-like K10610 DDB1; DNA damage-binding protein 1
F 123206300 DNA damage-binding protein 1a-like isoform X1 K10610 DDB1; DNA damage-binding protein 1
F 123219085 DNA damage-binding protein 1a-like K10610 DDB1; DNA damage-binding protein 1
F 123228084 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 123209820 protein DAMAGED DNA-BINDING 2 isoform X1 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 123194688 uncharacterized protein LOC123194688 K15082 RAD7; DNA repair protein RAD7
F 123195238 uncharacterized protein LOC123195238 K15082 RAD7; DNA repair protein RAD7
F 123206423 uncharacterized protein LOC123206423 K15082 RAD7; DNA repair protein RAD7
F 123207437 uncharacterized protein LOC123207437 K15082 RAD7; DNA repair protein RAD7
F 123196101 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 123198625 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 123192266 DNA-directed RNA polymerase II subunit RPB2-like K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 123218673 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 123206622 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 123214939 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 123227341 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 123198475 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 123205429 DNA-directed RNA polymerase II subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 123213249 DNA-directed RNA polymerase II subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 123218343 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 123227098 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 123193863 DNA-directed RNA polymerases II and IV subunit 5A isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 123200715 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 123225610 DNA-directed RNA polymerase V subunit 5A-like isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 123196617 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 123205713 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 123220061 DNA-directed RNA polymerases II, IV and V subunit 6A-like isoform X1 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 123208613 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 123210281 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 123210414 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 123219534 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 123202164 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 123221150 DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 123221153 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 123210536 DNA-directed RNA polymerases II, IV and V subunit 9B K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 123211176 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 123213877 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 123215457 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 123213163 DNA-directed RNA polymerases II, IV and V subunit 11-like K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 123215882 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 123206749 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 123213136 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 123215867 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 123193858 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 123200043 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 123193134 cullin-4-like K10609 CUL4; cullin 4
F 123218317 cullin-4-like K10609 CUL4; cullin 4
F 123205292 DNA damage-binding protein 1a-like K10610 DDB1; DNA damage-binding protein 1
F 123206299 DNA damage-binding protein 1-like K10610 DDB1; DNA damage-binding protein 1
F 123206300 DNA damage-binding protein 1a-like isoform X1 K10610 DDB1; DNA damage-binding protein 1
F 123219085 DNA damage-binding protein 1a-like K10610 DDB1; DNA damage-binding protein 1
F 123228084 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 123202591 WD repeat-containing protein ATCSA-1-like K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 123217131 protein CHROMATIN REMODELING 8-like K10841 ERCC6; DNA excision repair protein ERCC-6
F 123223744 protein CHROMATIN REMODELING 8-like isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 123207247 LOW QUALITY PROTEIN: UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 123215728 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 123192350 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 123218020 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 123204687 general transcription and DNA repair factor IIH helicase subunit XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 123222967 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 123202411 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 123205650 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 123226550 general transcription factor IIH subunit 2 isoform X1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 123229872 general transcription and DNA repair factor IIH subunit TFB4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 123192428 general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 123214981 general transcription and DNA repair factor IIH subunit TFB5-like isoform X1 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 123227716 general transcription and DNA repair factor IIH subunit TFB5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 123197010 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 123204503 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 123200671 cyclin-H1-1 isoform X1 K06634 CCNH; cyclin H
E 123199411 CDK-activating kinase assembly factor MAT1-like K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 123203363 uncharacterized protein LOC123203363 isoform X1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 123194037 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 123196035 replication protein A 70 kDa DNA-binding subunit E-like isoform X1 K07466 RFA1; replication factor A1
E 123200818 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 123210862 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 123194129 replication protein A 32 kDa subunit A isoform X1 K10739 RFA2; replication factor A2
E 123200002 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 123227397 replication protein A 14 kDa subunit A-like K10740 RPA3; replication factor A3
D Other NER factors
E 123200059 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 123211220 DNA repair endonuclease UVH1 isoform X1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 123223205 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 123209162 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 123206375 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 123212251 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 123192479 protein CIA1-like K24730 CIAO1; cytosolic iron-sulfur protein assembly protein CIAO1
E 123228189 protein CIA1-like K24730 CIAO1; cytosolic iron-sulfur protein assembly protein CIAO1
E 123196197 protein AE7 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 123199322 protein AE7-like 1 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 123197903 cullin-3B-like K03869 CUL3; cullin 3
E 123216966 cullin-3A K03869 CUL3; cullin 3
E 123225804 cullin-3B-like isoform X1 K03869 CUL3; cullin 3
E 123208281 elongin-C-like K03872 ELOC; elongin-C
E 123224956 elongin-C-like K03872 ELOC; elongin-C
E 123200063 uncharacterized protein LOC123200063 K03873 ELOB; elongin-B
E 123195946 uncharacterized protein LOC123195946 isoform X1 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 123196715 DNA mismatch repair protein MSH2 isoform X1 K08735 MSH2; DNA mismatch repair protein MSH2
E 123198087 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 123194541 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
E 123216697 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 123194799 DNA mismatch repair protein MLH1 isoform X1 K08734 MLH1; DNA mismatch repair protein MLH1
E 123215564 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 123199425 LOW QUALITY PROTEIN: DNA mismatch repair protein MLH3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 123199087 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 123205582 DNA polymerase delta catalytic subunit-like isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 123193836 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 123228037 DNA polymerase delta small subunit-like K02328 POLD2; DNA polymerase delta subunit 2
E 123195692 DNA polymerase delta subunit 3 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
E 123221028 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
E 123221030 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 123194037 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 123196035 replication protein A 70 kDa DNA-binding subunit E-like isoform X1 K07466 RFA1; replication factor A1
E 123200818 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 123210862 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 123194129 replication protein A 32 kDa subunit A isoform X1 K10739 RFA2; replication factor A2
E 123200002 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 123227397 replication protein A 14 kDa subunit A-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 123225626 LOW QUALITY PROTEIN: replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 123204059 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 123211108 replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
E 123228911 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 123198894 uncharacterized protein LOC123198894 K10756 RFC3_5; replication factor C subunit 3/5
E 123207180 replication factor C subunit 3-like isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
E 123209007 uncharacterized protein LOC123209007 K10756 RFC3_5; replication factor C subunit 3/5
E 123216452 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 123220016 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 123224489 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 123228588 replication factor C subunit 3-like isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 123201687 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 123225574 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 123192693 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 123196779 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 123209162 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 123194516 WD repeat-containing protein 76-like K24755 WDR76; WD repeat-containing protein 76
E 123201045 WD repeat-containing protein 76-like isoform X1 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 123195537 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 123211792 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 123226883 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 123205286 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 123216120 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 123227406 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 123194723 uncharacterized protein LOC123194723 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 123200439 uncharacterized protein LOC123200439 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 123202770 BRISC and BRCA1-A complex member 2-like K12173 BRE; BRCA1-A complex subunit BRE
E 123228651 BRISC and BRCA1-A complex member 2-like isoform X1 K12173 BRE; BRCA1-A complex subunit BRE
E 123212505 lys-63-specific deubiquitinase BRCC36-like isoform X1 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
E 123218128 lys-63-specific deubiquitinase BRCC36 isoform X1 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 123229735 Fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 123202617 DNA topoisomerase 2-binding protein 1-A-like isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 123207129 DNA topoisomerase 2-binding protein 1-A-like isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 123207521 BRCT domain-containing protein At4g02110-like K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 123215508 BRCT domain-containing protein At4g02110-like isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 123222935 BRCT domain-containing protein At4g02110-like K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 123195537 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 123211792 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 123226883 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA complex
E 123194379 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 123200309 DNA repair protein RAD51 homolog isoform X1 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 123194379 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 123200309 DNA repair protein RAD51 homolog isoform X1 K04482 RAD51; DNA repair protein RAD51
E 123205274 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 123216089 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 123197222 DNA repair protein RAD51 homolog 4-like isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 123208407 DNA repair protein RAD51 homolog 4-like isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 123214534 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 123194315 DNA repair protein XRCC3 homolog isoform X1 K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 123202634 DNA repair RAD52-like protein 1, mitochondrial isoform X1 K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 123206698 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
E 123226962 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
E 123230344 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 123211437 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 123213457 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 123214278 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 123227044 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 123227922 SNF2 domain-containing protein CLASSY 2-like isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 123204690 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 123223354 ATP-dependent DNA helicase Q-like 2 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 123203440 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 123195915 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 123230269 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 123213482 ATP-dependent DNA helicase Q-like 5 isoform X1 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 123195915 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 123230269 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 123221791 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 123224869 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 123215514 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 123208864 uncharacterized protein LOC123208864 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 123194037 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 123196035 replication protein A 70 kDa DNA-binding subunit E-like isoform X1 K07466 RFA1; replication factor A1
E 123200818 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 123210862 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 123194129 replication protein A 32 kDa subunit A isoform X1 K10739 RFA2; replication factor A2
E 123200002 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 123227397 replication protein A 14 kDa subunit A-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 123222969 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 123205121 serine/threonine-protein phosphatase 4 regulatory subunit 2-like K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 123205432 serine/threonine-protein phosphatase 4 regulatory subunit 2-like K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 123221658 serine/threonine-protein phosphatase 4 regulatory subunit 2-like K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 123212436 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 123220759 serine/threonine-protein phosphatase 4 regulatory subunit 3-like K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 123214399 uncharacterized protein LOC123214399 K19022 AP5B1; AP-5 complex subunit beta-1
E 123220949 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 123201374 AP-5 complex subunit zeta-1 isoform X1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 123213590 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 123225893 structural maintenance of chromosomes protein 6B K22804 SMC6; structural maintenance of chromosomes protein 6
E 123197305 uncharacterized protein LOC123197305 isoform X1 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 123201302 E3 SUMO-protein ligase MMS21-like isoform X1 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 123202423 E3 SUMO-protein ligase MMS21-like isoform X1 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 123206162 E3 SUMO-protein ligase MMS21-like isoform X1 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 123205621 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 123225351 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 123227927 non-structural maintenance of chromosomes element 4 homolog A-like isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 123198572 crossover junction endonuclease EME1B-like isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 123215672 LOW QUALITY PROTEIN: crossover junction endonuclease MUS81-like K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 123195633 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 123204176 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 123206518 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 123212105 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 123210117 uncharacterized protein LOC123210117 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 123213355 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 123218746 structure-specific endonuclease subunit SLX1 homolog isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 123198331 single-strand DNA endonuclease 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 123216568 flap endonuclease GEN-like 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 123199786 uncharacterized protein LOC123199786 isoform X1 K19026 SPG11; spatacsin
E 123194075 uncharacterized protein LOC123194075 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 123199328 protein MRG1-like isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 123209470 protein MRG1-like isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 123206049 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 123214492 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 123222478 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 123195621 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 123207957 zinc finger SWIM domain-containing protein 7-like isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 123227242 zinc finger SWIM domain-containing protein 7-like isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 123195800 uncharacterized protein LOC123195800 isoform X1 K27803 HROB; homologous recombination OB-fold protein
E 123208704 probable DNA helicase MCM8 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 123227050 probable DNA helicase MCM9 isoform X1 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
E 123210083 Werner Syndrome-like exonuclease isoform X1 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 123208870 DNA-dependent metalloprotease WSS1 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 123218625 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 123212821 single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 K26559 WHY1; single-stranded DNA-binding protein WHY1
E 123215277 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 123228915 single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 123228428 ATP-dependent DNA helicase 2 subunit KU70 isoform X1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 123215286 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 123195537 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 123211792 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 123201018 DNA ligase 4 isoform X1 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 123211689 DNA repair protein XRCC4 isoform X1 K10886 XRCC4; DNA-repair protein XRCC4
E 123220072 DNA repair protein XRCC4-like K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 123213995 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 123223030 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 123192137 uncharacterized protein LOC123192137 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 123192249 uncharacterized protein LOC123192249 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 123225535 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 123229243 E3 ubiquitin-protein ligase FANCL isoform X1 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 123202577 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 123216906 protein MHF1 homolog K11511 APITD1; centromere protein S
E 123209931 protein MHF2 homolog isoform X1 K15360 STRA13; centromere protein X
E 123200053 probable ubiquitin-conjugating enzyme E2 37 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 123195915 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 123230269 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 123221791 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 123224869 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 123215514 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 123208864 uncharacterized protein LOC123208864 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 123209268 Fanconi anemia group D2 protein homolog isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 123206785 Fanconi anemia group I protein-like K10895 FANCI; fanconi anemia group I protein
E 123221563 Fanconi anemia group I protein-like K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 123229735 Fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 123206386 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 123220245 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 123194379 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 123200309 DNA repair protein RAD51 homolog isoform X1 K04482 RAD51; DNA repair protein RAD51
E 123216089 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 123211309 LOW QUALITY PROTEIN: telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 123209117 WD repeat-containing protein 48-like isoform X1 K15361 WDR48; WD repeat-containing protein 48
E 123221222 WD repeat-containing protein 48-like K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 123212792 phytochrome-associated serine/threonine-protein phosphatase isoform X1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 123217323 phytochrome-associated serine/threonine-protein phosphatase-like K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 123201770 serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 123205307 serine/threonine-protein phosphatase 6 regulatory subunit 3-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 123218665 serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 123224917 serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 123227934 serine/threonine-protein phosphatase 6 regulatory subunit 3-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 123193228 telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E 123224102 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 123194516 WD repeat-containing protein 76-like K24755 WDR76; WD repeat-containing protein 76
E 123201045 WD repeat-containing protein 76-like isoform X1 K24755 WDR76; WD repeat-containing protein 76
E 123216709 abasic site processing protein YoqW isoform X1 K28434 HMCES; abasic site processing protein HMCES
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 123219216 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 123208190 DNA polymerase kappa-like isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 123213045 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 123227963 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 123208388 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 123204038 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 123204039 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 123208777 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 123210678 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 123210679 ubiquitin-conjugating enzyme E2 2-like isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 123221284 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 123221285 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 123221287 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 123208877 DNA repair protein RAD5A isoform X1 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 123226408 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 123205363 ubiquitin-conjugating enzyme E2 variant 1B-like isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 123213934 ubiquitin-conjugating enzyme E2 variant 1B-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 123217112 ubiquitin-conjugating enzyme E2 variant 1B-like isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 123227994 ubiquitin-conjugating enzyme E2 variant 1C-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 123228094 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 123202259 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 123230086 ubiquitin-conjugating enzyme E2 36-like isoform X1 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 123201687 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 123225574 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 123208323 cell cycle checkpoint control protein RAD9A isoform X1 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 123219207 uncharacterized protein LOC123219207 K10903 HUS1; HUS1 checkpoint protein
D 123196527 uncharacterized protein LOC123196527 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
D 123222846 uncharacterized protein LOC123222846 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 123198529 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 123204059 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 123211108 replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
D 123228911 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 123198894 uncharacterized protein LOC123198894 K10756 RFC3_5; replication factor C subunit 3/5
D 123207180 replication factor C subunit 3-like isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
D 123209007 uncharacterized protein LOC123209007 K10756 RFC3_5; replication factor C subunit 3/5
D 123216452 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 123220016 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 123224489 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 123228588 replication factor C subunit 3-like isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 123196527 uncharacterized protein LOC123196527 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
D 123222846 uncharacterized protein LOC123222846 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 123224697 protein timeless homolog isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 123213264 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 123211309 LOW QUALITY PROTEIN: telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 123197998 LOW QUALITY PROTEIN: TELO2-interacting protein 1 homolog K20403 TTI1; TELO2-interacting protein 1
D 123193654 uncharacterized protein At2g39910-like K23115 TTI2; TELO2-interacting protein 2
D 123206960 LOW QUALITY PROTEIN: uncharacterized protein At2g39910-like K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 123194761 ubiquitin-like domain-containing protein CIP73 K23390 BAG6; large proline-rich protein BAG6
D 123193072 protein GET4 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 123213200 serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 123204513 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 123192571 14-3-3 protein 9-like K06630 YWHAE; 14-3-3 protein epsilon
D 123196089 14-3-3-like protein D isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 123197896 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 123202597 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D 123203348 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 123203640 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 123205530 14-3-3 protein 7 isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 123205535 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 123214911 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 123214934 14-3-3 protein 6-like K06630 YWHAE; 14-3-3 protein epsilon
D 123217463 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 123219097 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 123223788 14-3-3-like protein D isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 123225114 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 123227052 14-3-3 protein 6-like K06630 YWHAE; 14-3-3 protein epsilon
D 123229493 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 123229495 14-3-3 protein 7-like isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 123229762 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 123215925 wee1-like protein kinase isoform X1 K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 123224369 wee1-like protein kinase isoform X1 K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 123212469 uncharacterized protein LOC123212469 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 123221149 uncharacterized protein LOC123221149 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 123197740 serine/threonine-protein kinase Nek6-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123198708 serine/threonine-protein kinase Nek2-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123208587 serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123209710 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123220254 serine/threonine-protein kinase Nek1-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123223222 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123224794 serine/threonine-protein kinase Nek5-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123225591 serine/threonine-protein kinase Nek5-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123225754 serine/threonine-protein kinase Nek6-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 123223775 protein downstream neighbor of son homolog K22422 DONSON; protein downstream neighbor of Son
D 123208948 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 123224721 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 123207252 replication stress response regulator SDE2-like K25059 SDE2; replication stress response regulator SDE2
D 123217090 replication stress response regulator SDE2-like K25059 SDE2; replication stress response regulator SDE2
D 123223441 replication stress response regulator SDE2-like K25059 SDE2; replication stress response regulator SDE2
D 123213503 protein DECREASED SIZE EXCLUSION LIMIT 1 isoform X1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 123195011 helicase and polymerase-containing protein TEBICHI isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 123215113 uncharacterized protein LOC123215113 isoform X1 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 123226903 myb-binding protein 1A-like protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 123197620 DNA-directed primase/polymerase protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 123194083 DNA cross-link repair protein SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 123223501 LOW QUALITY PROTEIN: DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 123195866 5' exonuclease Apollo-like K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 123222596 5' exonuclease Apollo-like isoform X1 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 123208991 exonuclease V, chloroplastic isoform X1 K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 123194577 endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 123210408 DNA annealing helicase and endonuclease ZRANB3 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 123192245 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 123214046 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 123218715 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 123196863 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 123211911 pre-mRNA-processing factor 19 homolog 1-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 123221602 pre-mRNA-processing factor 19 homolog 1-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 123198666 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 123220871 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 123196298 pre-mRNA-splicing factor SPF27 homolog isoform X1 K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 123204526 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 123206791 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
D 123220361 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 123213492 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 123229457 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 123198525 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 123211731 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 123192521 LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase small chain-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 123210301 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 123227986 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 123220157 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 123207155 uracil-DNA glycosylase, mitochondrial-like isoform X1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 123217346 uracil-DNA glycosylase, mitochondrial-like isoform X1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 123203120 uncharacterized protein LOC123203120 isoform X1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 123207346 DNA-3-methyladenine glycosylase 1-like isoform X1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 123208819 DNA-3-methyladenine glycosylase 1-like isoform X1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 123229955 alkylbase DNA glycosidase-like protein mag2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 123227119 DNA-3-methyladenine glycosylase isoform X1 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 123196703 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 123195063 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 123198002 uncharacterized protein LOC123198002 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 123199929 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 123207307 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 123213554 DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 123218469 probable GMP synthase [glutamine-hydrolyzing] isoform X1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 123225426 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 123229585 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 123211768 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 123196640 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 123211453 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 123226077 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1 K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 123214668 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 123214668 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 33351748 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 33351746 rpoC2; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 33351747 rpoC1; RNA polymerase beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 33351803 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 123217997 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 123204010 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 123194281 DNA repair protein recA homolog 3, mitochondrial-like isoform X1 K03553 recA; recombination protein RecA
E 123200154 DNA repair protein recA homolog 3, mitochondrial-like isoform X1 K03553 recA; recombination protein RecA
E 123202404 DNA repair protein recA homolog 1, chloroplastic-like isoform X1 K03553 recA; recombination protein RecA
E 123210344 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 123194281 DNA repair protein recA homolog 3, mitochondrial-like isoform X1 K03553 recA; recombination protein RecA
E 123200154 DNA repair protein recA homolog 3, mitochondrial-like isoform X1 K03553 recA; recombination protein RecA
E 123202404 DNA repair protein recA homolog 1, chloroplastic-like isoform X1 K03553 recA; recombination protein RecA
E 123210344 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
E 123210985 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E 123214869 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 123193274 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 123198191 DNA gyrase subunit B, chloroplastic/mitochondrial-like K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F 123205477 DNA gyrase subunit B, chloroplastic/mitochondrial-like K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 123210788 ATP-dependent DNA helicase RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 123194281 DNA repair protein recA homolog 3, mitochondrial-like isoform X1 K03553 recA; recombination protein RecA
D 123200154 DNA repair protein recA homolog 3, mitochondrial-like isoform X1 K03553 recA; recombination protein RecA
D 123202404 DNA repair protein recA homolog 1, chloroplastic-like isoform X1 K03553 recA; recombination protein RecA
D 123210344 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
D 123204010 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 123213492 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 123229457 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 29, 2025