+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Melaminivora jejuensis
%
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ACRISPR-Cas system
B Universal Cas proteins
C LVC68_16555 cas1f; type I-F CRISPR-associated endonuclease Cas1f K15342 cas1; CRISP-associated protein Cas1
C LVC68_16775 cas1c; type I-C CRISPR-associated endonuclease Cas1c K15342 cas1; CRISP-associated protein Cas1
C LVC68_16770 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
D LVC68_16550 cas3f; type I-F CRISPR-associated helicase Cas3f K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D LVC68_16805 cas3; CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
C Subtype I-A factors
D LVC68_16780 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-B factors
D LVC68_16780 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-C factors
D LVC68_16795 cas8c; type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1
D LVC68_16790 cas7c; type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2
D LVC68_16780 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D LVC68_16800 cas5c; type I-C CRISPR-associated protein Cas5c K19119 cas5d; CRISPR-associated protein Cas5d
C Subtype I-D factors
D LVC68_16780 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-E factors
C Subtype I-F factors
D LVC68_16535 csy1; type I-F CRISPR-associated protein Csy1 K19127 csy1; CRISPR-associated protein Csy1
D LVC68_16530 csy2; type I-F CRISPR-associated protein Csy2 K19128 csy2; CRISPR-associated protein Csy2
D LVC68_16525 csy3; type I-F CRISPR-associated protein Csy3 K19129 csy3; CRISPR-associated protein Csy3
D LVC68_16520 cas6f; type I-F CRISPR-associated endoribonuclease Cas6/Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
D LVC68_16780 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C LVC68_08365 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C LVC68_11170 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C LVC68_14600 DEAD/DEAH box helicase family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C LVC68_07345 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C LVC68_08360 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C LVC68_11160 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C LVC68_14595 restriction endonuclease K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C LVC68_08355 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C LVC68_11155 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C LVC68_14585 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D LVC68_16255 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
C LVC68_04850 DEAD/DEAH box helicase family protein K01156 res; type III restriction enzyme [EC:3.1.21.5]
C LVC68_15130 DEAD/DEAH box helicase family protein K01156 res; type III restriction enzyme [EC:3.1.21.5]
C LVC68_04845 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
C LVC68_08490 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
B Type IV R-M system
C LVC68_03845 restriction endonuclease K07448 mrr; restriction system protein
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
D LVC68_08400 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K07172 mazE; antitoxin MazE
C ChpB-ChpS
C YhaV-PrlF
D LVC68_08275 type II toxin-antitoxin system YhaV family toxin K19155 yhaV; toxin YhaV [EC:3.1.-.-]
D LVC68_08270 type II toxin-antitoxin system PrlF family antitoxin K19156 prlF; antitoxin PrlF
C RelE/StbE-RelB/StbD
C YafQ-dinJ
D LVC68_11135 type II toxin-antitoxin system YafQ family toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D LVC68_14340 type II toxin-antitoxin system YafQ family toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D LVC68_11140 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J
D LVC68_14335 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J
C YoeB-YefM
D LVC68_07565 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D LVC68_12235 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D LVC68_07560 type II toxin-antitoxin system Phd/YefM family antitoxin K19159 yefM; antitoxin YefM
D LVC68_12240 type II toxin-antitoxin system prevent-host-death family antitoxin K19159 yefM; antitoxin YefM
C HipA-HipB
D LVC68_14295 helix-turn-helix domain-containing protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
C HicA-HicB
D LVC68_15725 type II toxin-antitoxin system HicB family antitoxin K18843 hicB; antitoxin HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
C ParE-ParD
C Doc-Phd
C HigB-HigA
D LVC68_10985 type II toxin-antitoxin system HigB family toxin K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D LVC68_13430 type II toxin-antitoxin system HigB family toxin K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D LVC68_04830 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D LVC68_06890 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D LVC68_15135 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D LVC68_16540 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D LVC68_10990 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D LVC68_13435 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D LVC68_04835 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D LVC68_15140 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D LVC68_16545 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
C MqsR-MqsA
D LVC68_15880 type II toxin-antitoxin system MqsA family antitoxin K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
C VapC-VapB
D LVC68_07350 PIN domain-containing protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
D LVC68_11355 type II toxin-antitoxin system VapC family toxin K07062 fitB; toxin FitB [EC:3.1.-.-]
D LVC68_11495 type II toxin-antitoxin system VapC family toxin K07062 fitB; toxin FitB [EC:3.1.-.-]
C BC_0920-BC_0921
C Type II TA system related factors
D LVC68_03075 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D LVC68_01085 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D LVC68_04855 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D LVC68_04825 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D LVC68_09615 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
D LVC68_06255 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C LVC68_10070 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023