+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Methylomonas koyamae

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ACRISPR-Cas system B Universal Cas proteins C MKLM6_1308 type I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 C MKLM6_1943 type I-F CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 C MKLM6_2401 CRISPR-associated protein Cas4 K15342 cas1; CRISP-associated protein Cas1 C MKLM6_1309 type I-E CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 C MKLM6_2402 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins D MKLM6_1294 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D MKLM6_1944 type I-F CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D MKLM6_2396 hypothetical protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] C Subtype I-A factors C Subtype I-B factors C Subtype I-C factors C Subtype I-D factors C Subtype I-E factors D MKLM6_1299 type I-E CRISPR-associated protein Cse1/CasA K19123 casA; CRISPR system Cascade subunit CasA D MKLM6_1300 type I-E CRISPR-associated protein Cse2/CasB K19046 casB; CRISPR system Cascade subunit CasB D MKLM6_1303 type I-E CRISPR-associated protein Cas7/Cse4/CasC K19124 casC; CRISPR system Cascade subunit CasC D MKLM6_1304 type I-E CRISPR-associated protein Cas5/CasD K19125 casD; CRISPR system Cascade subunit CasD D MKLM6_1305 type I-E CRISPR-associated protein Cas6/Cse3/CasE K19126 casE; CRISPR system Cascade subunit CasE C Subtype I-F factors D MKLM6_1945 type I-F CRISPR-associated protein Csy1 K19127 csy1; CRISPR-associated protein Csy1 D MKLM6_1946 type I-F CRISPR-associated protein Csy2 K19128 csy2; CRISPR-associated protein Csy2 D MKLM6_1947 type I-F CRISPR-associated protein Csy3 K19129 csy3; CRISPR-associated protein Csy3 D MKLM6_1948 CRISPR-associated endonuclease Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] C Subtype I-U factors D MKLM6_2394 type I-U CRISPR-associated protein Cas7 K19131 csb1; CRISPR-associated protein Csb1 D MKLM6_2395 type I-U CRISPR-associated protein Cas5/Cas6 K19132 csb2; CRISPR-associated protein Csb2 B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors # ARestriction and modification system (R-M system) B Type I R-M system C MKLM6_0479 restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C MKLM6_3221 Type III restriction protein res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C MKLM6_3673 type I restriction enzyme subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C MKLM6_3735 type I restriction enzyme subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C MKLM6_1466 type I restriction enzyme subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C MKLM6_3674 type I restriction enzyme subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C MKLM6_3738 type I restriction enzyme subunit M K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C MKLM6_1468 type I restriction enzyme subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C MKLM6_0061 Type I restriction-modification system methylation subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MKLM6_0472 DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MKLM6_3219 restriction endonuclease subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MKLM6_3675 type I restriction enzyme subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MKLM6_3736 type I restriction enzyme subunit S K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MKLM6_1045 DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C MKLM6_1473 type I restriction-modification protein subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] B Type II R-M system C Restriction endonucleases C DNA methyltransferases B Type III R-M system C MKLM6_0849 type III restriction endonuclease subunit R K01156 res; type III restriction enzyme [EC:3.1.21.5] C MKLM6_1586 type III restriction endonuclease subunit R K01156 res; type III restriction enzyme [EC:3.1.21.5] C MKLM6_1582 DNA methylase N-4 K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] C MKLM6_0850 DNA methylase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] B Type IV R-M system # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok C SymE-SymR C Ldr-Rdl C TisB-IstR C Ibs-Sib C ShoB-OhsC C RalR-RalA B Type II TA system C MazF-MazE D MKLM6_3165 growth inhibitor PemK K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D MKLM6_4343 mRNA-degrading endonuclease K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D MKLM6_1680 growth inhibitor PemK K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D MKLM6_4396 AbrB family transcriptional regulator K07172 mazE; antitoxin MazE D MKLM6_4344 PbsX family transcriptional regulator K07172 mazE; antitoxin MazE D MKLM6_1681 PbsX family transcriptional regulator K07172 mazE; antitoxin MazE C ChpB-ChpS C YhaV-PrlF C RelE/StbE-RelB/StbD D MKLM6_1298 hypothetical protein K06218 relE; mRNA interferase RelE/StbE D MKLM6_1470 hypothetical protein K06218 relE; mRNA interferase RelE/StbE D MKLM6_1327 hypothetical protein K06218 relE; mRNA interferase RelE/StbE C YafQ-dinJ C YoeB-YefM D MKLM6_1325 Toxin yoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-] D MKLM6_1324 hypothetical protein K19159 yefM; antitoxin YefM C HipA-HipB D MKLM6_2271 toxin HipA K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D MKLM6_2270 transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB C HicA-HicB D MKLM6_2306 hypothetical protein K18843 hicB; antitoxin HicB C YafO-YafN C Hha-TomB C PspC-PspB C CcdB-CcdA D MKLM6_3386 acetoacetyl-CoA synthase K19164 ccdA; antitoxin CcdA C ParE-ParD D MKLM6_1307 addiction module toxin RelE K19092 parE1_3_4; toxin ParE1/3/4 D MKLM6_0822 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 C Doc-Phd D MKLM6_3597 hypothetical protein K07341 doc; death on curing protein C HigB-HigA D MKLM6_3155 hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D MKLM6_0051 peptidase K07334 higB-1; toxin HigB-1 D MKLM6_3777 plasmid stabilization protein K07334 higB-1; toxin HigB-1 D MKLM6_3156 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D MKLM6_0052 LacI family transcriptional regulator K21498 higA-1; antitoxin HigA-1 C MqsR-MqsA C VapC-VapB D MKLM6_3498 Ribonuclease VapC K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D MKLM6_3502 tRNA(FMet)-specific endonuclease VapC K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D MKLM6_1503 plasmid maintenance protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D MKLM6_1160 twitching motility protein PilT K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D MKLM6_3497 antitoxin K18829 mvpT; antitoxin VapB D MKLM6_3501 antitoxin K18829 mvpT; antitoxin VapB D MKLM6_1504 virulence factor K18829 mvpT; antitoxin VapB C PezT-PezA C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA D MKLM6_3504 twitching motility protein PilT K07062 fitB; toxin FitB [EC:3.1.-.-] D MKLM6_1096 twitching motility protein PilT K07062 fitB; toxin FitB [EC:3.1.-.-] D MKLM6_3500 hypothetical protein K07062 fitB; toxin FitB [EC:3.1.-.-] D MKLM6_0825 DNA-binding protein K21495 fitA; antitoxin FitA C BC_0920-BC_0921 C Type II TA system related factors D MKLM6_4035 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D MKLM6_3702 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D MKLM6_3588 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D MKLM6_1261 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D MKLM6_3081 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU C CptA-CptB D MKLM6_1987 hypothetical protein K09159 cptB; antitoxin CptB B Type V TA system C GhoT-GhoS # ADNA phosphothiolation system B Sulfur modification proteins C MKLM6_3238 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C MKLM6_3507 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C MKLM6_4282 3'-phosphoadenosine 5'-phosphosulfate sulfurtransferase DndC K19170 dndC; DNA sulfur modification protein DndC C MKLM6_4283 hypothetical protein K19171 dndD; DNA sulfur modification protein DndD C MKLM6_4284 hypothetical protein K19172 dndE; DNA sulfur modification protein DndE B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023