+E Transcription factors KO #

  Transcription Factors - Methylomonas koyamae

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D MKLM6_4058 AraC family transcriptional regulator K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D MKLM6_1049 AraC family transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB D MKLM6_2530 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D MKLM6_0266 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D MKLM6_3785 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D MKLM6_2541 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D MKLM6_3741 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D MKLM6_2587 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D MKLM6_2076 LysR family transcriptional regulator K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D MKLM6_3063 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family C LacI family C GntR family C TetR/AcrR family D MKLM6_3710 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D MKLM6_0010 Transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D MKLM6_1275 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D MKLM6_0334 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D MKLM6_1795 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D MKLM6_4158 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family D MKLM6_0748 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D MKLM6_2312 hypothetical protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D MKLM6_2845 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D MKLM6_2315 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D MKLM6_2343 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D MKLM6_2524 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D MKLM6_3932 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MKLM6_2851 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MKLM6_3049 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MKLM6_2203 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D MKLM6_3239 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D MKLM6_2581 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D MKLM6_3455 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D MKLM6_1734 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D MKLM6_3017 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D MKLM6_0828 Nlp family transcriptional regulator K07724 ner; Ner family transcriptional regulator D MKLM6_2270 transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D MKLM6_3156 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D MKLM6_2231 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D MKLM6_1657 Fis family transcriptional regulator K11917 sfa3; sigma-54 dependent transcriptional regulator D MKLM6_2069 Fis family transcriptional regulator K11917 sfa3; sigma-54 dependent transcriptional regulator D MKLM6_2821 Fis family transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D MKLM6_2994 nif-specific transcriptional activator NifA K02584 nifA; Nif-specific regulatory protein D MKLM6_3304 transporter K02019 modE; molybdate transport system regulatory protein D MKLM6_3305 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein D MKLM6_4163 MopB-like protein K02019 modE; molybdate transport system regulatory protein D MKLM6_2183 transporter K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family D MKLM6_0250 nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D MKLM6_1766 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D MKLM6_3475 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D MKLM6_0123 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MKLM6_0017 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MKLM6_4359 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MKLM6_1953 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MKLM6_2925 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D MKLM6_1808 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D MKLM6_1098 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D MKLM6_0422 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D MKLM6_2566 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D MKLM6_1215 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein D MKLM6_1922 hypothetical protein K07733 alpA; prophage regulatory protein D MKLM6_0420 hypothetical protein K07735 algH; putative transcriptional regulator D MKLM6_0356 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor D MKLM6_2191 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D MKLM6_2483 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D MKLM6_4020 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0