+D GENES KO
#
KEGG Orthology (KO) - Microbacterium limosum
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:mliy00010]
D RYJ27_04380 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RYJ27_06990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYJ27_07980 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RYJ27_09390 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RYJ27_09395 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYJ27_07020 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RYJ27_07030 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYJ27_01055 type II glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D RYJ27_07025 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RYJ27_10315 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RYJ27_09530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYJ27_04855 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RYJ27_06635 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RYJ27_00255 PEP/pyruvate-binding domain-containing protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RYJ27_05885 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RYJ27_06090 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_01215 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYJ27_13400 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D RYJ27_03270 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_06520 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_00705 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RYJ27_02755 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RYJ27_01510 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RYJ27_05915 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D RYJ27_09310 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:mliy00020]
D RYJ27_03540 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RYJ27_01380 bifunctional 2-methylcitrate synthase/citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D RYJ27_06180 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RYJ27_10615 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RYJ27_08525 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_10660 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RYJ27_10665 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RYJ27_09130 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RYJ27_09135 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RYJ27_09120 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RYJ27_09125 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RYJ27_09435 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RYJ27_00795 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYJ27_03215 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D RYJ27_04360 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D RYJ27_09310 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RYJ27_05885 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RYJ27_06090 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:mliy00030]
D RYJ27_06990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYJ27_06995 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RYJ27_07005 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D RYJ27_09615 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RYJ27_06565 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RYJ27_06980 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYJ27_12540 transketolase C-terminal domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYJ27_12545 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYJ27_06985 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RYJ27_05185 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RYJ27_01000 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D RYJ27_08000 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D RYJ27_12880 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D RYJ27_01510 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RYJ27_09655 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RYJ27_09610 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RYJ27_09605 FGGY-family carbohydrate kinase K25031 gntK; gluconokinase [EC:2.7.1.12]
D RYJ27_09395 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYJ27_09390 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RYJ27_07980 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:mliy00040]
D RYJ27_01775 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RYJ27_10015 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYJ27_02725 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D RYJ27_09795 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D RYJ27_06565 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RYJ27_02735 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D RYJ27_02750 FGGY family carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D RYJ27_02745 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RYJ27_11835 FAD-binding protein K00594 xyoA; alditol oxidase [EC:1.1.3.41]
D RYJ27_12535 alcohol dehydrogenase catalytic domain-containing protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
C 00051 Fructose and mannose metabolism [PATH:mliy00051]
D RYJ27_02675 PfkB family carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RYJ27_08740 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RYJ27_09005 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RYJ27_09115 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RYJ27_01890 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RYJ27_01885 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D RYJ27_07980 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RYJ27_09390 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RYJ27_09050 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D RYJ27_07325 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D RYJ27_12535 alcohol dehydrogenase catalytic domain-containing protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D RYJ27_11835 FAD-binding protein K00594 xyoA; alditol oxidase [EC:1.1.3.41]
D RYJ27_02745 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RYJ27_09395 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYJ27_07020 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RYJ27_05185 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RYJ27_07320 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RYJ27_09045 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D RYJ27_09040 PTS mannitol transporter subunit IICB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
C 00052 Galactose metabolism [PATH:mliy00052]
D RYJ27_00705 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RYJ27_02755 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RYJ27_01490 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RYJ27_01495 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D RYJ27_03225 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RYJ27_10015 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYJ27_01510 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RYJ27_04380 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RYJ27_08815 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RYJ27_02735 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D RYJ27_07980 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RYJ27_00390 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:mliy00053]
D RYJ27_01775 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RYJ27_02725 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D RYJ27_09795 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYJ27_11170 mandelate racemase/muconate lactonizing enzyme family protein K18983 gci; D-galactarolactone cycloisomerase [EC:5.5.1.27]
C 00500 Starch and sucrose metabolism [PATH:mliy00500]
D RYJ27_00390 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RYJ27_10015 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYJ27_00580 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RYJ27_02035 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RYJ27_10905 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D RYJ27_09025 PTS sugar transporter K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RYJ27_11330 sugar phosphate nucleotidyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D RYJ27_06890 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D RYJ27_05015 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RYJ27_04315 glgP; alpha-glucan family phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D RYJ27_08080 treS; maltose alpha-D-glucosyltransferase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D RYJ27_08085 phosphotransferase K16146 pep2; maltokinase [EC:2.7.1.175]
D RYJ27_05020 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D RYJ27_06885 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D RYJ27_05025 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D RYJ27_11755 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D RYJ27_11750 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D RYJ27_11745 treZ; malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D RYJ27_07475 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D RYJ27_07470 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D RYJ27_03175 glycosyl hydrolase family 65 protein K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64]
D RYJ27_01510 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RYJ27_04380 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RYJ27_06990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYJ27_02675 PfkB family carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00620 Pyruvate metabolism [PATH:mliy00620]
D RYJ27_03270 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_06520 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_05885 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RYJ27_06090 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_00280 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D RYJ27_03165 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RYJ27_03155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYJ27_04855 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RYJ27_06635 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RYJ27_08990 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYJ27_13400 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D RYJ27_02195 CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D RYJ27_03235 alpha-hydroxy acid oxidase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D RYJ27_01215 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RYJ27_07730 aldehyde dehydrogenase family protein K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D RYJ27_04360 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D RYJ27_00795 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYJ27_03215 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D RYJ27_09435 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RYJ27_09550 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RYJ27_09310 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RYJ27_00255 PEP/pyruvate-binding domain-containing protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RYJ27_01720 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D RYJ27_02830 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D RYJ27_05770 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:mliy00630]
D RYJ27_02835 aceA; isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
D RYJ27_01720 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D RYJ27_02830 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D RYJ27_00795 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYJ27_03540 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RYJ27_01380 bifunctional 2-methylcitrate synthase/citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D RYJ27_06180 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RYJ27_03270 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_06520 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_08990 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RYJ27_08955 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RYJ27_10590 FAD-linked oxidase C-terminal domain-containing protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D RYJ27_08690 catalase K03781 katE; catalase [EC:1.11.1.6]
D RYJ27_00155 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RYJ27_05925 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06070 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_10575 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYJ27_03455 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RYJ27_03445 glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_03450 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D RYJ27_01505 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYJ27_02215 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYJ27_07730 aldehyde dehydrogenase family protein K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D RYJ27_09610 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RYJ27_08525 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RYJ27_00305 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D RYJ27_12575 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D RYJ27_11680 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00640 Propanoate metabolism [PATH:mliy00640]
D RYJ27_03270 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_06520 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_02195 CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D RYJ27_03165 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RYJ27_03155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYJ27_12995 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RYJ27_12990 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RYJ27_12985 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_00765 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RYJ27_08990 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RYJ27_02850 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RYJ27_08955 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RYJ27_10665 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RYJ27_10660 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RYJ27_11900 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RYJ27_01380 bifunctional 2-methylcitrate synthase/citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D RYJ27_01370 MmgE/PrpD family protein K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D RYJ27_06180 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RYJ27_01375 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D RYJ27_02835 aceA; isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
D RYJ27_01215 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:mliy00650]
D RYJ27_00280 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D RYJ27_09130 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RYJ27_09135 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RYJ27_09120 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RYJ27_09125 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RYJ27_02850 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RYJ27_02865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_02870 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_07460 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RYJ27_07455 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:mliy00660]
D RYJ27_07460 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RYJ27_07455 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RYJ27_10665 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RYJ27_10660 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RYJ27_09235 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D RYJ27_04705 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RYJ27_04710 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RYJ27_07420 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:mliy00562]
D RYJ27_02760 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RYJ27_06840 alkaline phosphatase family protein K01114 plc; phospholipase C [EC:3.1.4.3]
D RYJ27_11965 sugar phosphate isomerase/epimerase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D RYJ27_11900 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RYJ27_07020 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:mliy00190]
D RYJ27_09510 FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RYJ27_09130 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RYJ27_09135 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RYJ27_09120 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RYJ27_09125 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RYJ27_04580 Rieske 2Fe-2S domain-containing protein K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RYJ27_04575 ubiquinol-cytochrome c reductase cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]
D RYJ27_04585 c-type cytochrome K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D RYJ27_06975 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RYJ27_04565 cytochrome c oxidase subunit 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D RYJ27_04590 heme-copper oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D RYJ27_04560 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D RYJ27_04555 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D RYJ27_06965 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RYJ27_03065 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RYJ27_03060 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RYJ27_08190 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RYJ27_08180 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RYJ27_08185 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RYJ27_08195 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RYJ27_08175 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RYJ27_08210 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RYJ27_08200 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RYJ27_08205 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RYJ27_01095 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D RYJ27_10350 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:mliy00710]
D RYJ27_07025 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RYJ27_07030 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYJ27_01055 type II glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D RYJ27_09395 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYJ27_09390 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RYJ27_06980 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYJ27_12540 transketolase C-terminal domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYJ27_12545 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYJ27_05185 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RYJ27_07020 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RYJ27_06565 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RYJ27_06985 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RYJ27_09550 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RYJ27_00795 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:mliy00720]
D RYJ27_00255 PEP/pyruvate-binding domain-containing protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RYJ27_09550 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RYJ27_04360 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D RYJ27_00795 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYJ27_09435 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RYJ27_09130 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RYJ27_09135 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RYJ27_09120 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RYJ27_09125 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RYJ27_10660 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RYJ27_10665 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RYJ27_11895 zinc-binding dehydrogenase K14465 K14465; succinate semialdehyde reductase (NADPH) [EC:1.1.1.-]
D RYJ27_10615 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RYJ27_06180 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RYJ27_02180 enoyl-CoA hydratase/isomerase family protein K15019 K15019; 3-hydroxypropionyl-coenzyme A dehydratase [EC:4.2.1.116]
D RYJ27_10570 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RYJ27_12570 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RYJ27_03155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYJ27_03165 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RYJ27_03270 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_06520 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:mliy00680]
D RYJ27_10575 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYJ27_09530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYJ27_09550 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RYJ27_00795 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYJ27_09395 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYJ27_09390 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RYJ27_07980 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RYJ27_03165 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RYJ27_03155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYJ27_03270 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_06520 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_00255 PEP/pyruvate-binding domain-containing protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RYJ27_10315 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RYJ27_07435 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RYJ27_10150 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RYJ27_06895 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RYJ27_11650 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
D RYJ27_00495 thiamine pyrophosphate-binding protein K06034 comD; sulfopyruvate decarboxylase subunit alpha [EC:4.1.1.79]
D RYJ27_01240 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase CofG K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32]
D RYJ27_01225 cofC; 2-phospho-L-lactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]
D RYJ27_13410 cofD; 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
D RYJ27_01245 coenzyme F420-0:L-glutamate ligase K24998 fbiB; dehydro coenzyme F420 reductase / coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:1.3.8.17 6.3.2.31 6.3.2.34]
C 00910 Nitrogen metabolism [PATH:mliy00910]
D RYJ27_11680 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D RYJ27_04870 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RYJ27_04860 molybdopterin oxidoreductase family protein K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D RYJ27_04865 FAD-dependent oxidoreductase K00360 nasB; assimilatory nitrate reductase electron transfer subunit [EC:1.7.99.-]
D RYJ27_04895 nirB; nitrite reductase large subunit NirB K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D RYJ27_04890 nirD; nitrite reductase small subunit NirD K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D RYJ27_01790 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RYJ27_05925 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06070 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06625 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RYJ27_06630 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RYJ27_01605 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D RYJ27_09430 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:mliy00920]
D RYJ27_06510 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYJ27_06515 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYJ27_12850 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYJ27_06505 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_07230 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_12845 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_07895 FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D RYJ27_11855 NAD(P)H-dependent oxidoreductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D RYJ27_12840 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D RYJ27_12835 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RYJ27_12830 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D RYJ27_12825 nitrite/sulfite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D RYJ27_06225 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RYJ27_08240 epsC; serine O-acetyltransferase EpsC K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RYJ27_08235 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RYJ27_08480 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:mliy00061]
D RYJ27_08990 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RYJ27_05865 acyl carrier protein K02078 acpP; acyl carrier protein
D RYJ27_05875 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RYJ27_05870 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RYJ27_05860 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RYJ27_02190 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYJ27_06900 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYJ27_04375 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_05045 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:mliy00071]
D RYJ27_01385 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_06195 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_00765 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RYJ27_10680 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYJ27_12485 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYJ27_04375 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_05045 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:mliy00074]
D RYJ27_08990 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RYJ27_10870 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RYJ27_05865 acyl carrier protein K02078 acpP; acyl carrier protein
D RYJ27_05875 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RYJ27_08955 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:mliy00121]
D RYJ27_03370 AMP-binding protein K15868 baiB; bile acid-coenzyme A ligase [EC:6.2.1.7]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:mliy00561]
D RYJ27_01505 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYJ27_02215 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYJ27_10465 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RYJ27_12395 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RYJ27_03945 HAD-IIA family hydrolase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D RYJ27_04385 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RYJ27_08135 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:mliy00564]
D RYJ27_04725 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RYJ27_10470 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D RYJ27_12400 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D RYJ27_04385 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RYJ27_08135 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RYJ27_00810 adenylyltransferase/cytidyltransferase family protein K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D RYJ27_06840 alkaline phosphatase family protein K01114 plc; phospholipase C [EC:3.1.4.3]
D RYJ27_06735 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RYJ27_07995 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RYJ27_10755 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RYJ27_04975 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RYJ27_07810 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RYJ27_01175 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
D RYJ27_06840 alkaline phosphatase family protein K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:mliy00592]
D RYJ27_00765 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RYJ27_01385 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_06195 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:mliy01040]
D RYJ27_00765 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RYJ27_05155 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:mliy00230]
D RYJ27_01510 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RYJ27_09655 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RYJ27_00640 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RYJ27_00615 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RYJ27_10645 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RYJ27_00355 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D RYJ27_00570 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D RYJ27_00565 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RYJ27_00635 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RYJ27_08940 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RYJ27_08935 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RYJ27_00600 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RYJ27_13025 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RYJ27_10640 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RYJ27_00395 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RYJ27_12630 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D RYJ27_09000 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RYJ27_01105 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RYJ27_10780 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RYJ27_10790 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RYJ27_05285 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RYJ27_07610 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RYJ27_04310 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYJ27_10765 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYJ27_11730 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYJ27_08520 GuaB1 family IMP dehydrogenase-related protein K26110 guaB1; GMP reductase [EC:1.7.1.7]
D RYJ27_00540 nucleoside phosphorylase K26212 K26212; guanosine phosphorylase [EC:2.4.2.15]
D RYJ27_06500 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RYJ27_09920 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RYJ27_09915 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RYJ27_05805 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D RYJ27_06370 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RYJ27_10885 Ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RYJ27_11795 GTP pyrophosphokinase family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D RYJ27_00225 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RYJ27_09080 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D RYJ27_11210 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D RYJ27_00465 add; adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D RYJ27_11415 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RYJ27_07950 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D RYJ27_08620 phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D RYJ27_06305 HIT domain-containing protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D RYJ27_12840 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D RYJ27_12835 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RYJ27_00400 hpxO; FAD-dependent urate hydroxylase HpxO K16839 hpxO; FAD-dependent urate hydroxylase [EC:1.14.13.113]
D RYJ27_00405 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RYJ27_00410 uraD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D RYJ27_00415 allB; allantoinase AllB K01466 allB; allantoinase [EC:3.5.2.5]
D RYJ27_00435 allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D RYJ27_00430 alanine--glyoxylate aminotransferase family protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D RYJ27_07935 fumarylacetoacetate hydrolase family protein K16856 ugl; ureidoglycolate lyase [EC:4.3.2.3]
C 00240 Pyrimidine metabolism [PATH:mliy00240]
D RYJ27_06490 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RYJ27_06485 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RYJ27_06470 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RYJ27_06475 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RYJ27_04535 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RYJ27_12635 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RYJ27_06495 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D RYJ27_04965 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RYJ27_05285 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RYJ27_08985 nucleoside triphosphate pyrophosphatase K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RYJ27_03970 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RYJ27_04010 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RYJ27_08025 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D RYJ27_12630 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D RYJ27_02130 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RYJ27_06465 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RYJ27_09090 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D RYJ27_12870 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RYJ27_09920 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RYJ27_09915 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RYJ27_03305 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RYJ27_06165 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RYJ27_09085 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D RYJ27_03220 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D RYJ27_07830 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D RYJ27_12025 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:mliy00250]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYJ27_03425 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D RYJ27_08605 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RYJ27_00205 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RYJ27_07940 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D RYJ27_00215 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RYJ27_03895 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RYJ27_00225 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RYJ27_13025 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RYJ27_06470 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RYJ27_02850 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RYJ27_02865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_02870 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_06625 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RYJ27_06630 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RYJ27_01790 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RYJ27_01420 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYJ27_12130 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYJ27_05925 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06070 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06490 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RYJ27_06485 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RYJ27_06560 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RYJ27_11145 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RYJ27_00565 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RYJ27_10875 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RYJ27_00640 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:mliy00260]
D RYJ27_03205 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RYJ27_03210 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RYJ27_08285 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RYJ27_08275 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D RYJ27_08280 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RYJ27_11670 low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D RYJ27_10575 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYJ27_01505 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYJ27_02215 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYJ27_10315 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RYJ27_07435 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RYJ27_10150 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RYJ27_06895 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RYJ27_03455 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RYJ27_03445 glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_03450 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D RYJ27_12030 FAD-dependent oxidoreductase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1]
D RYJ27_09480 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RYJ27_06615 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RYJ27_06610 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:mliy00270]
D RYJ27_08240 epsC; serine O-acetyltransferase EpsC K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RYJ27_08235 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RYJ27_06935 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RYJ27_06245 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RYJ27_06540 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RYJ27_02100 nucleoside phosphorylase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D RYJ27_00510 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D RYJ27_12775 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYJ27_08710 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RYJ27_08075 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D RYJ27_03205 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RYJ27_03210 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RYJ27_08285 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RYJ27_08275 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D RYJ27_08480 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RYJ27_06525 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RYJ27_08475 bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RYJ27_09775 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RYJ27_07415 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYJ27_06225 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RYJ27_01215 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RYJ27_00795 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYJ27_07435 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RYJ27_10150 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:mliy00280]
D RYJ27_07415 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYJ27_12995 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RYJ27_12990 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RYJ27_12985 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_01385 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_06195 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_08990 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RYJ27_08955 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RYJ27_11900 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYJ27_02850 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:mliy00290]
D RYJ27_09480 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RYJ27_04705 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RYJ27_04710 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RYJ27_07420 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RYJ27_07460 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RYJ27_07455 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RYJ27_07450 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RYJ27_07465 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RYJ27_07415 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYJ27_08605 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RYJ27_05770 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:mliy00300]
D RYJ27_08285 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RYJ27_03205 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RYJ27_03210 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RYJ27_07825 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RYJ27_07860 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RYJ27_03550 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RYJ27_03880 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RYJ27_07680 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D RYJ27_03555 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RYJ27_03740 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RYJ27_08290 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RYJ27_08120 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RYJ27_04440 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:mliy00310]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_10680 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYJ27_12485 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYJ27_02850 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RYJ27_02865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_02870 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_00610 lhgO; L-2-hydroxyglutarate oxidase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:mliy00220]
D RYJ27_03885 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D RYJ27_00215 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RYJ27_03895 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RYJ27_08400 arginase family protein K01476 rocF; arginase [EC:3.5.3.1]
D RYJ27_01425 N-dimethylarginine dimethylaminohydrolase K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D RYJ27_07205 atzF; allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D RYJ27_06560 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RYJ27_11145 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RYJ27_00565 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RYJ27_05925 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06070 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06490 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RYJ27_06485 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RYJ27_01790 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYJ27_08605 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RYJ27_01190 amino-acid N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D RYJ27_03870 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D RYJ27_03875 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D RYJ27_03865 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D RYJ27_03880 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:mliy00330]
D RYJ27_12120 hydantoinase/oxoprolinase family protein K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D RYJ27_12115 hydantoinase B/oxoprolinase family protein K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYJ27_10610 GNAT family N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D RYJ27_00425 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYJ27_01425 N-dimethylarginine dimethylaminohydrolase K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D RYJ27_08400 arginase family protein K01476 rocF; arginase [EC:3.5.3.1]
D RYJ27_01430 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D RYJ27_02145 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RYJ27_01420 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYJ27_12130 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYJ27_05320 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RYJ27_05325 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D RYJ27_00800 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:mliy00340]
D RYJ27_06580 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D RYJ27_06575 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D RYJ27_06590 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D RYJ27_03785 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D RYJ27_03780 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D RYJ27_06585 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D RYJ27_03775 hisB; imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D RYJ27_03770 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_13000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_07505 inositol monophosphatase family protein K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D RYJ27_04525 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:mliy00350]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYJ27_03770 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_13000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_02865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_02870 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_09220 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
C 00360 Phenylalanine metabolism [PATH:mliy00360]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYJ27_03770 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_13000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_09220 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D RYJ27_00425 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYJ27_06950 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D RYJ27_00275 fumarylacetoacetate hydrolase family protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D RYJ27_00285 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D RYJ27_00280 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00380 Tryptophan metabolism [PATH:mliy00380]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_10680 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYJ27_12485 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYJ27_00425 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYJ27_08690 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:mliy00400]
D RYJ27_04390 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RYJ27_06435 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RYJ27_06440 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D RYJ27_06430 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RYJ27_08545 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D RYJ27_06425 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RYJ27_04595 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D RYJ27_03785 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D RYJ27_06605 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D RYJ27_06615 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RYJ27_06610 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RYJ27_00240 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D RYJ27_04005 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RYJ27_01515 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYJ27_03770 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_13000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:mliy00410]
D RYJ27_11120 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RYJ27_02850 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYJ27_01155 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RYJ27_11125 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RYJ27_12025 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RYJ27_00765 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RYJ27_11900 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:mliy00430]
D RYJ27_00205 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RYJ27_03155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYJ27_03165 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:mliy00450]
D RYJ27_06935 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RYJ27_06245 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RYJ27_00375 SufS family cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D RYJ27_04110 FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RYJ27_10725 FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RYJ27_13435 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RYJ27_00525 molybdopterin cofactor-binding domain-containing protein K12528 xdhD; putative selenate reductase molybdopterin-binding subunit
D RYJ27_12840 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D RYJ27_12835 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RYJ27_09735 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:mliy00460]
D RYJ27_00580 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RYJ27_02035 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RYJ27_10575 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYJ27_11680 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00470 D-Amino acid metabolism [PATH:mliy00470]
D RYJ27_10865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYJ27_04730 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RYJ27_06560 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RYJ27_11145 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RYJ27_00565 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RYJ27_07620 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RYJ27_04450 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RYJ27_03740 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RYJ27_08290 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:mliy00480]
D RYJ27_11630 5-oxoprolinase subunit PxpA K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D RYJ27_04830 glutamate--cysteine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D RYJ27_06100 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RYJ27_12070 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RYJ27_05175 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RYJ27_10615 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RYJ27_09615 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RYJ27_06995 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RYJ27_05795 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:mliy00520]
D RYJ27_09660 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RYJ27_04715 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RYJ27_02820 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RYJ27_05660 glycoside hydrolase family 3 N-terminal domain-containing protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RYJ27_10890 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RYJ27_10875 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RYJ27_02675 PfkB family carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RYJ27_06990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYJ27_08740 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RYJ27_04380 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RYJ27_05915 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D RYJ27_01510 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RYJ27_10015 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYJ27_01775 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RYJ27_01490 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RYJ27_01495 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D RYJ27_03225 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RYJ27_08815 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RYJ27_09005 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RYJ27_09115 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RYJ27_11330 sugar phosphate nucleotidyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D RYJ27_06890 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D RYJ27_08865 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00541 Biosynthesis of various nucleotide sugars [PATH:mliy00541]
D RYJ27_09660 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RYJ27_01940 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.115]
D RYJ27_10015 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYJ27_01775 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RYJ27_11330 sugar phosphate nucleotidyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D RYJ27_08865 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RYJ27_08870 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RYJ27_11340 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RYJ27_08875 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase family protein/NAD(P)-dependent oxidoreductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D RYJ27_09115 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RYJ27_01890 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RYJ27_01885 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:mliy00515]
D RYJ27_09745 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:mliy00514]
D RYJ27_09745 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:mliy00542]
D RYJ27_08220 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00550 Peptidoglycan biosynthesis [PATH:mliy00550]
D RYJ27_04715 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RYJ27_02820 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RYJ27_04465 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RYJ27_04450 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RYJ27_08120 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RYJ27_04730 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RYJ27_04440 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RYJ27_05785 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RYJ27_06795 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYJ27_04445 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RYJ27_04460 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RYJ27_00115 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_04455 ftsW; putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_04435 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RYJ27_00110 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A
D RYJ27_01290 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RYJ27_00720 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RYJ27_06120 MurT ligase domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:mliy00552]
D RYJ27_06795 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYJ27_08220 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RYJ27_07665 CDP-glycerol glycerophosphotransferase family protein K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium [PATH:mliy00572]
D RYJ27_08220 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RYJ27_08755 glycosyltransferase K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
C 00543 Exopolysaccharide biosynthesis [PATH:mliy00543]
D RYJ27_01895 glycosyltransferase K03208 wcaI; putative colanic acid biosynthesis glycosyltransferase WcaI
D RYJ27_01900 acetyltransferase K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-]
D RYJ27_08220 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RYJ27_08240 epsC; serine O-acetyltransferase EpsC K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RYJ27_00820 glycosyltransferase K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:mliy00730]
D RYJ27_07355 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D RYJ27_01620 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D RYJ27_03415 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_05030 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_07380 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D RYJ27_06185 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RYJ27_07370 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D RYJ27_01610 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RYJ27_01615 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RYJ27_04740 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D RYJ27_08550 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RYJ27_11415 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:mliy00740]
D RYJ27_09175 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RYJ27_09165 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RYJ27_09180 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RYJ27_09170 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RYJ27_08005 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RYJ27_07895 FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D RYJ27_11855 NAD(P)H-dependent oxidoreductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D RYJ27_01610 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
C 00750 Vitamin B6 metabolism [PATH:mliy00750]
D RYJ27_05640 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D RYJ27_06310 pdxY; pyridoxal kinase PdxY K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D RYJ27_10150 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RYJ27_08280 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RYJ27_06320 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D RYJ27_06325 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:mliy00760]
D RYJ27_03425 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D RYJ27_03430 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D RYJ27_03420 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D RYJ27_07625 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D RYJ27_09000 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RYJ27_12630 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D RYJ27_05335 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RYJ27_03655 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RYJ27_02120 NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D RYJ27_07805 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D RYJ27_09320 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D RYJ27_03960 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RYJ27_02865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYJ27_02870 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:mliy00770]
D RYJ27_07460 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RYJ27_07455 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RYJ27_07450 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RYJ27_07465 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RYJ27_11115 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RYJ27_01155 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RYJ27_11125 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RYJ27_10880 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D RYJ27_11135 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D RYJ27_11140 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D RYJ27_04755 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RYJ27_07070 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RYJ27_10870 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RYJ27_07415 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYJ27_12025 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RYJ27_11120 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:mliy00780]
D RYJ27_05860 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RYJ27_02190 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYJ27_06900 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYJ27_08950 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:mliy00785]
D RYJ27_04815 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RYJ27_04810 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RYJ27_01475 biotin/lipoate A/B protein ligase family protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_05885 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RYJ27_06090 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RYJ27_08525 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RYJ27_12995 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RYJ27_12990 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RYJ27_12985 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RYJ27_03455 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RYJ27_03445 glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RYJ27_03450 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:mliy00790]
D RYJ27_01115 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RYJ27_01125 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RYJ27_01130 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RYJ27_01120 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RYJ27_05275 folylpolyglutamate synthase/dihydrofolate synthase family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RYJ27_09175 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RYJ27_00095 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D RYJ27_05680 pabB; aminodeoxychorismate synthase component I K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85]
D RYJ27_10380 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D RYJ27_03070 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RYJ27_03015 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RYJ27_03000 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RYJ27_03020 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:mliy00670]
D RYJ27_10570 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RYJ27_10575 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYJ27_10645 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RYJ27_10640 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RYJ27_03445 glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RYJ27_07830 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D RYJ27_00305 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D RYJ27_12575 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D RYJ27_12570 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RYJ27_10020 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D RYJ27_06540 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RYJ27_08710 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RYJ27_03455 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_03450 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:mliy00860]
D RYJ27_07400 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYJ27_12335 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RYJ27_12285 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RYJ27_12290 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RYJ27_12300 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RYJ27_04880 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RYJ27_12295 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RYJ27_12330 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RYJ27_12325 FAD-dependent oxidoreductase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D RYJ27_05180 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RYJ27_04885 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D RYJ27_06975 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RYJ27_06965 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RYJ27_12905 biliverdin-producing heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20]
D RYJ27_00990 multicopper oxidase family protein K22552 mmcO; multicopper oxidase [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:mliy00130]
D RYJ27_02480 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RYJ27_02470 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D RYJ27_02460 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D RYJ27_02420 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D RYJ27_02435 AMP-binding protein K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D RYJ27_02430 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D RYJ27_02445 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:mliy00900]
D RYJ27_06185 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RYJ27_08125 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RYJ27_10285 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D RYJ27_09710 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RYJ27_08090 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RYJ27_09410 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RYJ27_03710 idi; isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D RYJ27_03705 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RYJ27_04410 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RYJ27_09455 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D RYJ27_05785 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:mliy00907]
D RYJ27_01320 NAD(P)-dependent oxidoreductase K13775 atuG; citronellol/citronellal dehydrogenase
D RYJ27_01385 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_06195 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RYJ27_06980 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYJ27_12540 transketolase C-terminal domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYJ27_12545 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:mliy00523]
D RYJ27_08865 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RYJ27_08870 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RYJ27_11340 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RYJ27_08875 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase family protein/NAD(P)-dependent oxidoreductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D RYJ27_02470 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D RYJ27_08870 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:mliy00946]
D RYJ27_00580 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RYJ27_02035 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:mliy00311]
D RYJ27_02030 acetylxylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
D RYJ27_12590 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:mliy00332]
D RYJ27_05320 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RYJ27_05325 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:mliy00261]
D RYJ27_12840 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D RYJ27_12835 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RYJ27_03205 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RYJ27_03210 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RYJ27_07825 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RYJ27_07860 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:mliy00521]
D RYJ27_04380 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RYJ27_01510 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RYJ27_02760 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RYJ27_08865 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RYJ27_08870 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RYJ27_11340 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RYJ27_08875 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase family protein/NAD(P)-dependent oxidoreductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D RYJ27_04380 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:mliy00525]
D RYJ27_08865 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RYJ27_08870 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:mliy00401]
D RYJ27_04005 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYJ27_03770 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_13000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D RYJ27_08100 chorismate-binding protein K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]
C 00333 Prodigiosin biosynthesis
D RYJ27_05875 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RYJ27_02190 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYJ27_06900 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RYJ27_05865 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:mliy00999]
D RYJ27_06540 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RYJ27_00580 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RYJ27_02035 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
D RYJ27_04410 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:mliy00362]
D RYJ27_12415 3-oxoacid CoA-transferase subunit A K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D RYJ27_12410 3-oxoacid CoA-transferase subunit B K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D RYJ27_01385 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_06195 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_00590 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D RYJ27_00275 fumarylacetoacetate hydrolase family protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D RYJ27_00285 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D RYJ27_00280 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D RYJ27_00300 2-hydroxymuconate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RYJ27_00290 fumarylacetoacetate hydrolase family protein K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D RYJ27_01685 acyl-CoA dehydrogenase family protein K20942 graA; resorcinol 4-hydroxylase (FADH2) [EC:1.14.14.27]
D RYJ27_12435 pcaG; protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D RYJ27_12440 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D RYJ27_12430 lyase family protein K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D RYJ27_12420 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D RYJ27_09230 PrpF domain-containing protein K16514 galD; 4-oxalomesaconate tautomerase [EC:5.3.2.8]
D RYJ27_09210 amidohydrolase family protein K10220 ligJ; 4-oxalmesaconate hydratase [EC:4.2.1.83]
D RYJ27_09235 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D RYJ27_12455 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D RYJ27_10680 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYJ27_12485 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
C 00627 Aminobenzoate degradation [PATH:mliy00627]
D RYJ27_00425 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYJ27_12505 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D RYJ27_00250 PEP-utilizing enzyme K25936 ppsA; phenol phosphorylase subunit alpha [EC:2.7.1.238]
D RYJ27_00245 aminomethyl transferase family protein K15066 ligM; vanillate/3-O-methylgallate O-demethylase [EC:2.1.1.341]
D RYJ27_09240 aminomethyl transferase family protein K15066 ligM; vanillate/3-O-methylgallate O-demethylase [EC:2.1.1.341]
D RYJ27_09250 aminomethyl transferase family protein K15066 ligM; vanillate/3-O-methylgallate O-demethylase [EC:2.1.1.341]
D RYJ27_09260 aminomethyl transferase family protein K15066 ligM; vanillate/3-O-methylgallate O-demethylase [EC:2.1.1.341]
D RYJ27_12580 aminomethyl transferase family protein K15066 ligM; vanillate/3-O-methylgallate O-demethylase [EC:2.1.1.341]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:mliy00625]
D RYJ27_00505 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D RYJ27_00590 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation [PATH:mliy00623]
D RYJ27_09220 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D RYJ27_12505 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
C 00622 Xylene degradation [PATH:mliy00622]
D RYJ27_09220 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D RYJ27_12505 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D RYJ27_00590 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D RYJ27_00300 2-hydroxymuconate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RYJ27_00290 fumarylacetoacetate hydrolase family protein K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D RYJ27_00275 fumarylacetoacetate hydrolase family protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D RYJ27_00285 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D RYJ27_00280 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00633 Nitrotoluene degradation [PATH:mliy00633]
D RYJ27_03375 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D RYJ27_01385 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_06195 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:mliy00643]
D RYJ27_00425 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYJ27_00590 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D RYJ27_02195 CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
C 00791 Atrazine degradation [PATH:mliy00791]
D RYJ27_07215 ring-opening amidohydrolase K03383 atzD; cyanuric acid amidohydrolase [EC:3.5.2.15]
D RYJ27_07205 atzF; allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D RYJ27_07210 isochorismatase family cysteine hydrolase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84]
D RYJ27_07220 isochorismatase family cysteine hydrolase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:mliy00621]
D RYJ27_00300 2-hydroxymuconate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RYJ27_00290 fumarylacetoacetate hydrolase family protein K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D RYJ27_00275 fumarylacetoacetate hydrolase family protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D RYJ27_00285 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D RYJ27_00280 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
D RYJ27_12435 pcaG; protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D RYJ27_12440 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation [PATH:mliy00984]
D RYJ27_01385 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYJ27_06195 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:mliy03020]
D RYJ27_11615 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RYJ27_11610 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RYJ27_11375 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RYJ27_06535 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D RYJ27_10175 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:mliy03010]
D RYJ27_03930 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYJ27_07135 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RYJ27_04955 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RYJ27_11485 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RYJ27_06395 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RYJ27_11435 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RYJ27_13390 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RYJ27_11540 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RYJ27_11450 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RYJ27_10895 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RYJ27_11520 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RYJ27_11380 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RYJ27_11545 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RYJ27_11385 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RYJ27_12930 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RYJ27_07910 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RYJ27_04835 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RYJ27_11470 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RYJ27_13380 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RYJ27_11495 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RYJ27_05705 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RYJ27_02900 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RYJ27_11500 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RYJ27_11515 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RYJ27_11510 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RYJ27_11455 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RYJ27_11445 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RYJ27_13375 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RYJ27_02935 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RYJ27_02895 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RYJ27_02940 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RYJ27_10900 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RYJ27_11465 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RYJ27_11425 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RYJ27_11480 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RYJ27_11370 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RYJ27_11440 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RYJ27_04910 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RYJ27_03810 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RYJ27_05305 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RYJ27_11490 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RYJ27_11505 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RYJ27_11460 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RYJ27_09570 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D RYJ27_05310 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RYJ27_12940 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RYJ27_11475 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RYJ27_11430 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RYJ27_06875 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RYJ27_04765 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RYJ27_12935 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RYJ27_13480 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RYJ27_03805 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RYJ27_11390 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:mliy00970]
D RYJ27_00050 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYJ27_05350 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYJ27_05560 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYJ27_09995 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYJ27_01760 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYJ27_05110 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYJ27_08315 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYJ27_10130 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYJ27_05820 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RYJ27_01080 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYJ27_06270 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RYJ27_07395 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYJ27_09665 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYJ27_01085 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYJ27_07310 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYJ27_05220 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYJ27_06265 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYJ27_12875 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYJ27_05100 tRNA-His K14226 tRNA-His; tRNA His
D RYJ27_00045 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYJ27_00135 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_06640 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_06805 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_07590 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_09505 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_07500 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYJ27_10405 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYJ27_02775 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYJ27_05840 tRNA-Ile K14230 tRNA-Met; tRNA Met
D RYJ27_07790 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYJ27_00900 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RYJ27_01075 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RYJ27_03245 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYJ27_04030 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYJ27_05225 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYJ27_01545 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYJ27_01555 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYJ27_03125 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYJ27_12280 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYJ27_02770 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYJ27_03320 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYJ27_10245 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYJ27_02880 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RYJ27_02680 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RYJ27_05890 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYJ27_06260 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYJ27_06275 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYJ27_07400 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYJ27_05060 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RYJ27_05065 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RYJ27_05055 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RYJ27_06405 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RYJ27_12350 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RYJ27_06300 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RYJ27_01535 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RYJ27_10275 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RYJ27_09735 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RYJ27_06550 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RYJ27_05260 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RYJ27_05685 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RYJ27_05270 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RYJ27_01160 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RYJ27_08300 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RYJ27_08070 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RYJ27_09535 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RYJ27_03840 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RYJ27_03845 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RYJ27_03910 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RYJ27_09155 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes [PATH:mliy03008]
D RYJ27_04770 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RYJ27_05105 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:mliy03060]
D RYJ27_11420 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RYJ27_02885 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RYJ27_07015 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RYJ27_06360 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RYJ27_06365 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RYJ27_06355 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RYJ27_13465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RYJ27_08610 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RYJ27_04825 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RYJ27_03145 ffs; signal recognition particle sRNA small type K01983 ffs; signal recognition particle 4.5S RNA
D RYJ27_04800 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RYJ27_06760 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RYJ27_03575 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D RYJ27_06755 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D RYJ27_04915 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RYJ27_00920 hypothetical protein K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_04500 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_05395 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13225 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13300 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13315 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13330 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13345 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
D RYJ27_04070 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D RYJ27_04120 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D RYJ27_11110 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:mliy04122]
D RYJ27_03415 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_05030 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_06225 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RYJ27_05035 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RYJ27_03000 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RYJ27_03070 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RYJ27_03005 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein
D RYJ27_03025 ThiF family adenylyltransferase K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D RYJ27_07365 moeB; molybdopterin-synthase adenylyltransferase MoeB K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D RYJ27_03015 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RYJ27_07375 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:mliy03018]
D RYJ27_05295 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D RYJ27_09530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYJ27_07880 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RYJ27_00605 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RYJ27_00760 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RYJ27_08270 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RYJ27_07820 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RYJ27_04075 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_05450 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_12800 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_10205 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYJ27_10350 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYJ27_13415 CCA tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:mliy03030]
D RYJ27_06870 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_09375 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_04515 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYJ27_03180 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYJ27_03310 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYJ27_05700 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYJ27_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYJ27_13360 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RYJ27_05810 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RYJ27_05135 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_13385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_04920 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RYJ27_06655 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYJ27_05040 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:mliy03410]
D RYJ27_08460 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RYJ27_08030 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RYJ27_12945 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RYJ27_04775 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RYJ27_09160 DNA-formamidopyrimidine glycosylase family protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RYJ27_05190 DNA-formamidopyrimidine glycosylase family protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RYJ27_11715 DNA-formamidopyrimidine glycosylase family protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RYJ27_10635 Ada metal-binding domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RYJ27_10050 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RYJ27_09150 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RYJ27_12640 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RYJ27_06655 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYJ27_05040 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:mliy03420]
D RYJ27_09555 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RYJ27_07055 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RYJ27_07065 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RYJ27_07050 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D RYJ27_03645 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_03660 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_10710 3'-5' exonuclease K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_06655 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYJ27_05040 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RYJ27_10175 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03430 Mismatch repair [PATH:mliy03430]
D RYJ27_03645 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_03660 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_10710 3'-5' exonuclease K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_09415 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RYJ27_09420 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RYJ27_05135 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_13385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_04515 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYJ27_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYJ27_03180 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYJ27_05700 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYJ27_03310 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYJ27_06870 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_09375 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_05040 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:mliy03440]
D RYJ27_05135 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_13385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_00015 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RYJ27_05780 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RYJ27_03185 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D RYJ27_03720 recA; recombinase RecA K03553 recA; recombination protein RecA
D RYJ27_06655 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYJ27_06345 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RYJ27_06350 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RYJ27_06340 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RYJ27_04750 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RYJ27_04515 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYJ27_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYJ27_03180 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYJ27_05700 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYJ27_03310 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYJ27_06870 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_09375 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_06545 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:mliy03450]
D RYJ27_07600 Ku protein K10979 ku; DNA end-binding protein Ku
D RYJ27_07605 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:mliy03250]
D RYJ27_00070 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus and Alphavirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03273 Virion - Lassa virus and SFTS virus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:mliy02010]
D RYJ27_06510 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYJ27_06515 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYJ27_12850 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYJ27_06505 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_07230 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_12845 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_03035 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RYJ27_03040 ABC transporter permease K02018 modB; molybdate transport system permease protein
D RYJ27_03045 ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RYJ27_12050 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D RYJ27_12045 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D RYJ27_12040 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RYJ27_00335 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RYJ27_00330 proline/glycine betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein
D RYJ27_00325 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D RYJ27_09680 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D RYJ27_09685 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RYJ27_09690 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RYJ27_09695 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D RYJ27_02655 maltose ABC transporter substrate-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D RYJ27_02660 ABC transporter permease subunit K10109 malF; maltose/maltodextrin transport system permease protein
D RYJ27_10255 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RYJ27_02665 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D RYJ27_11995 sugar ABC transporter substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein
D RYJ27_02950 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein
D RYJ27_02955 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein
D RYJ27_02960 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein
D RYJ27_10595 sugar transporter K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein
D RYJ27_09790 chvE; multiple monosaccharide ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D RYJ27_09780 mmsB; multiple monosaccharide ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D RYJ27_09785 mmsA; multiple monosaccharide ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RYJ27_09110 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RYJ27_09100 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RYJ27_09095 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D RYJ27_09105 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RYJ27_02165 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_07715 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_11960 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_12110 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_07720 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RYJ27_11945 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RYJ27_12100 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RYJ27_12525 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RYJ27_02170 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_07725 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_11950 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_12105 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_12530 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_12520 sugar ABC transporter substrate-binding protein K17202 eryG; erythritol transport system substrate-binding protein
D RYJ27_02175 ABC transporter permease K17206 xltB; putative xylitol transport system permease protein
D RYJ27_10360 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RYJ27_10365 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D RYJ27_10370 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D RYJ27_10375 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RYJ27_03825 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D RYJ27_03830 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein
D RYJ27_03835 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein
D RYJ27_03820 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D RYJ27_01675 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_07120 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_09290 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_10820 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_07115 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_09280 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_10795 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_09285 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RYJ27_10800 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RYJ27_07110 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_09270 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_10805 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_07105 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_09275 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_10810 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_03470 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RYJ27_03475 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RYJ27_03480 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RYJ27_03485 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RYJ27_03500 ABC transporter family substrate-binding protein K13889 gsiB; glutathione transport system substrate-binding protein
D RYJ27_09060 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D RYJ27_09065 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D RYJ27_09070 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein
D RYJ27_09075 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D RYJ27_06930 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D RYJ27_00725 energy-coupling factor transporter transmembrane component T K16785 ecfT; energy-coupling factor transport system permease protein
D RYJ27_01305 energy-coupling factor transporter transmembrane component T K16785 ecfT; energy-coupling factor transport system permease protein
D RYJ27_08810 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RYJ27_08805 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RYJ27_09195 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein
D RYJ27_09200 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein
D RYJ27_09205 ATP-binding cassette domain-containing protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D RYJ27_10500 ABC transporter permease K09813 hrtB; hemin transport system permease protein
D RYJ27_10495 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D RYJ27_07535 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RYJ27_07540 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
C 02060 Phosphotransferase system (PTS) [PATH:mliy02060]
D RYJ27_09035 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RYJ27_09015 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RYJ27_09030 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RYJ27_09045 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D RYJ27_09040 PTS mannitol transporter subunit IICB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D RYJ27_09025 PTS sugar transporter K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RYJ27_07320 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RYJ27_07325 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:mliy03070]
D RYJ27_06360 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RYJ27_06365 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RYJ27_02885 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RYJ27_07015 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RYJ27_11420 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RYJ27_06355 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RYJ27_13465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RYJ27_08610 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RYJ27_04800 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RYJ27_04825 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RYJ27_06760 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RYJ27_03575 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D RYJ27_06755 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:mliy02020]
D RYJ27_10305 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RYJ27_10300 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3
D RYJ27_10360 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RYJ27_10910 response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D RYJ27_06965 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RYJ27_07675 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RYJ27_08650 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RYJ27_08655 mtrA; MtrAB system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D RYJ27_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RYJ27_00720 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RYJ27_07570 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D RYJ27_03275 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RYJ27_07585 ATPase, T2SS/T4P/T4SS family K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RYJ27_03280 type II secretion system F family protein K12510 tadB; tight adherence protein B
D RYJ27_07580 type II secretion system F family protein K12510 tadB; tight adherence protein B
D RYJ27_07575 type II secretion system F family protein K12511 tadC; tight adherence protein C
D RYJ27_05925 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06070 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06560 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RYJ27_11145 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RYJ27_03065 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RYJ27_03060 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RYJ27_00835 hypothetical protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RYJ27_10945 low molecular weight phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RYJ27_13020 low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RYJ27_10905 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04082 Neuroactive ligand signaling
C 04081 Hormone signaling
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome [PATH:mliy04146]
D RYJ27_00765 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RYJ27_04375 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_05045 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_03655 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RYJ27_10615 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RYJ27_08690 catalase K03781 katE; catalase [EC:1.11.1.6]
D RYJ27_07035 superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D RYJ27_08400 arginase family protein K01476 rocF; arginase [EC:3.5.3.1]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:mliy02024]
D RYJ27_04390 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RYJ27_08100 chorismate-binding protein K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]
D RYJ27_01675 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_07120 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_09290 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_10820 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_07115 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_09280 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_10795 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_09285 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RYJ27_10800 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RYJ27_07110 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_09270 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_10805 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_07105 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_09275 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_10810 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_04375 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_05045 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_09165 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RYJ27_03470 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RYJ27_03475 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RYJ27_03480 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RYJ27_03485 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RYJ27_08430 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RYJ27_08435 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RYJ27_08440 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RYJ27_08445 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RYJ27_13465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RYJ27_02885 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RYJ27_07015 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RYJ27_11420 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RYJ27_06355 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RYJ27_08610 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RYJ27_04800 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RYJ27_04825 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RYJ27_06840 alkaline phosphatase family protein K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:mliy02030]
D RYJ27_02655 maltose ABC transporter substrate-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D RYJ27_02165 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_07715 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_11960 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_12110 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly
D RYJ27_06115 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RYJ27_09530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04981 Folate transport and metabolism [PATH:mliy04981]
D RYJ27_10020 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D RYJ27_10575 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
C 04382 Cornified envelope formation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:mliy01501]
D RYJ27_05660 glycoside hydrolase family 3 N-terminal domain-containing protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RYJ27_03470 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RYJ27_03475 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RYJ27_03480 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RYJ27_03485 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RYJ27_12590 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D RYJ27_04435 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:mliy01502]
D RYJ27_04730 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RYJ27_10865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYJ27_04440 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RYJ27_04445 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RYJ27_04460 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RYJ27_00720 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D RYJ27_00070 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:mliy01000]
C 01001 Protein kinases [BR:mliy01001]
D RYJ27_00100 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RYJ27_00105 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RYJ27_04395 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RYJ27_10080 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RYJ27_01560 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D RYJ27_00860 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RYJ27_10990 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RYJ27_11320 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RYJ27_10305 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RYJ27_08650 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RYJ27_09635 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RYJ27_10195 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RYJ27_10925 PAS domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RYJ27_08570 histidine kinase N-terminal domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:mliy01009]
D RYJ27_08710 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RYJ27_00120 PP2C family serine/threonine-protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D RYJ27_06895 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:mliy01002]
D RYJ27_00920 hypothetical protein K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_04500 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_05395 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13225 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13300 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13315 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13330 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_13345 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYJ27_04215 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYJ27_04265 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYJ27_04310 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYJ27_10765 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYJ27_11730 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYJ27_00640 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RYJ27_06625 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RYJ27_10875 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RYJ27_03395 type 1 glutamine amidotransferase domain-containing protein K05520 yhbO; deglycase [EC:3.5.1.124]
D RYJ27_05175 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RYJ27_05250 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D RYJ27_12595 M13-type metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RYJ27_00720 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RYJ27_06100 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RYJ27_12070 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RYJ27_03555 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RYJ27_00435 allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D RYJ27_04900 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RYJ27_11410 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RYJ27_03605 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RYJ27_01110 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RYJ27_01805 zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RYJ27_07930 PrsW family intramembrane metalloprotease K24131 prsW; protease PrsW [EC:3.4.-.-]
D RYJ27_07675 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RYJ27_07970 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D RYJ27_01290 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RYJ27_05235 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RYJ27_05240 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RYJ27_03670 site-2 protease family protein K07177 K07177; Lon-like protease
D RYJ27_03760 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RYJ27_04915 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RYJ27_00800 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 01003 Glycosyltransferases [BR:mliy01003]
D RYJ27_00865 glycosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D RYJ27_09745 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D RYJ27_07890 glycosyltransferase family 1 protein K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D RYJ27_06885 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D RYJ27_00115 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_04455 ftsW; putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_08220 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RYJ27_00875 glycosyltransferase family 39 protein K14340 K14340; mannosyltransferase [EC:2.4.1.-]
D RYJ27_00820 glycosyltransferase K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251]
D RYJ27_08755 glycosyltransferase K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
D RYJ27_07475 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:mliy01005]
D RYJ27_08220 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:mliy01011]
D RYJ27_04715 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RYJ27_02820 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RYJ27_04465 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RYJ27_04450 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RYJ27_08120 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RYJ27_04730 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RYJ27_10865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYJ27_07620 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RYJ27_04445 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RYJ27_04460 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RYJ27_06795 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYJ27_13430 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RYJ27_04435 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RYJ27_00110 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A
D RYJ27_01290 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RYJ27_00115 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_04455 ftsW; putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_00720 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RYJ27_06415 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:mliy01004]
D RYJ27_05875 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RYJ27_05870 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RYJ27_05860 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RYJ27_02190 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYJ27_06900 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYJ27_05155 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RYJ27_03270 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_06520 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYJ27_04375 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_05045 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_04385 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RYJ27_08135 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:mliy01006]
D RYJ27_04410 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RYJ27_03705 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RYJ27_09455 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D RYJ27_05785 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RYJ27_03735 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RYJ27_02445 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D RYJ27_06975 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:mliy01007]
D RYJ27_07400 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYJ27_03910 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RYJ27_09155 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RYJ27_10275 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RYJ27_08300 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RYJ27_09735 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RYJ27_05270 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RYJ27_05260 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RYJ27_05685 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RYJ27_01160 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RYJ27_09535 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RYJ27_12350 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RYJ27_01535 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RYJ27_08070 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RYJ27_06300 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RYJ27_06405 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RYJ27_03840 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RYJ27_03845 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RYJ27_02825 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYJ27_08605 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RYJ27_07680 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D RYJ27_03770 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_13000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYJ27_06935 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RYJ27_01430 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D RYJ27_03880 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RYJ27_02850 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RYJ27_12285 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RYJ27_07415 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYJ27_10150 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RYJ27_00430 alanine--glyoxylate aminotransferase family protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:mliy00194]
D RYJ27_08175 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RYJ27_08180 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RYJ27_08185 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RYJ27_08190 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RYJ27_08195 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RYJ27_08200 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RYJ27_08205 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RYJ27_08210 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:mliy03000]
D RYJ27_12775 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYJ27_10635 Ada metal-binding domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RYJ27_02910 LysR family transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D RYJ27_07330 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D RYJ27_02160 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RYJ27_02690 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RYJ27_05480 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RYJ27_11975 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RYJ27_05465 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D RYJ27_12785 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D RYJ27_12965 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RYJ27_08685 Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D RYJ27_12385 IclR family transcriptional regulator C-terminal domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RYJ27_02790 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RYJ27_05405 metalloregulator ArsR/SmtB family transcription factor K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D RYJ27_13310 metalloregulator ArsR/SmtB family transcription factor K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D RYJ27_13340 metalloregulator ArsR/SmtB family transcription factor K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D RYJ27_13355 metalloregulator ArsR/SmtB family transcription factor K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D RYJ27_13170 metalloregulator ArsR/SmtB family transcription factor K21886 nmtR; ArsR family transcriptional regulator, nickel/cobalt-responsive transcriptional repressor
D RYJ27_02840 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D RYJ27_09315 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D RYJ27_07800 helix-turn-helix transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D RYJ27_12585 PadR family transcriptional regulator K26740 vanR; PadR family transcriptional regulator, regulator of vanillate utilization
D RYJ27_10145 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D RYJ27_12620 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D RYJ27_08950 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RYJ27_11185 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D RYJ27_01420 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYJ27_12130 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYJ27_09020 PTS sugar transporter subunit IIA K03491 licR; probable licABCH operon transcriptional regulator
D RYJ27_08565 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RYJ27_08735 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RYJ27_01040 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RYJ27_09965 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RYJ27_12220 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RYJ27_13445 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RYJ27_10290 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RYJ27_05730 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D RYJ27_06465 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RYJ27_05195 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D RYJ27_04530 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D RYJ27_04420 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:mliy03021]
D RYJ27_10175 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RYJ27_11375 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RYJ27_11615 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RYJ27_11610 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RYJ27_06535 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RYJ27_06115 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D RYJ27_08540 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RYJ27_10395 sigK; ECF RNA polymerase sigma factor SigK K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RYJ27_08050 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RYJ27_06450 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RYJ27_02890 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RYJ27_09475 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RYJ27_08270 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:mliy03019]
D RYJ27_05295 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D RYJ27_04770 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RYJ27_07820 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RYJ27_05105 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RYJ27_00605 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RYJ27_00760 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RYJ27_09530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYJ27_07880 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RYJ27_08270 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RYJ27_04075 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_05450 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_12800 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_10205 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYJ27_10350 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYJ27_12675 rraA; ribonuclease E activity regulator RraA K02553 rraA; regulator of ribonuclease activity A
D RYJ27_07045 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D RYJ27_06750 DEAD/DEAH box helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D RYJ27_09765 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:mliy03011]
D RYJ27_07135 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RYJ27_04955 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RYJ27_11485 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RYJ27_06395 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RYJ27_11435 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RYJ27_13390 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RYJ27_11540 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RYJ27_11450 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RYJ27_10895 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RYJ27_11520 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RYJ27_11380 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RYJ27_11545 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RYJ27_11385 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RYJ27_12930 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RYJ27_07910 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RYJ27_04835 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RYJ27_11470 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RYJ27_13380 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RYJ27_11495 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RYJ27_05705 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RYJ27_02900 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RYJ27_11500 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RYJ27_11515 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RYJ27_11510 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RYJ27_11455 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RYJ27_11445 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RYJ27_13375 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RYJ27_02935 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RYJ27_02895 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RYJ27_02940 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RYJ27_10900 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RYJ27_11465 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RYJ27_11425 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RYJ27_11480 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RYJ27_11370 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RYJ27_11440 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RYJ27_04910 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RYJ27_03810 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RYJ27_05305 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RYJ27_11490 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RYJ27_11505 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RYJ27_11460 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RYJ27_05310 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RYJ27_12940 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RYJ27_11475 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RYJ27_11430 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RYJ27_06875 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RYJ27_04765 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RYJ27_12935 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RYJ27_13480 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RYJ27_03805 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RYJ27_11390 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RYJ27_09570 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D RYJ27_03930 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:mliy03009]
D RYJ27_04770 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RYJ27_05105 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RYJ27_05765 era; GTPase Era K03595 era; GTPase
D RYJ27_05315 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D RYJ27_08050 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RYJ27_06450 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RYJ27_02890 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RYJ27_09720 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RYJ27_06555 transcription antitermination factor NusB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RYJ27_03745 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RYJ27_09860 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RYJ27_04745 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RYJ27_05740 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RYJ27_13455 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RYJ27_04425 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RYJ27_09740 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RYJ27_03955 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RYJ27_10270 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RYJ27_01330 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RYJ27_04000 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RYJ27_04505 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RYJ27_10850 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D RYJ27_10010 GNAT family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D RYJ27_04845 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D RYJ27_05295 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D RYJ27_06410 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RYJ27_00605 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RYJ27_08550 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RYJ27_04015 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D RYJ27_03750 hflX; GTPase HflX K03665 hflX; GTPase
D RYJ27_08225 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RYJ27_06370 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RYJ27_08035 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D RYJ27_10110 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D RYJ27_05345 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D RYJ27_05755 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D RYJ27_09365 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D RYJ27_04760 YceD family protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:mliy03016]
D RYJ27_13415 CCA tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D RYJ27_07400 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYJ27_08070 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RYJ27_05270 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RYJ27_05685 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RYJ27_09735 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RYJ27_08300 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RYJ27_01160 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RYJ27_06405 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RYJ27_12350 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RYJ27_06300 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RYJ27_01535 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RYJ27_10275 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RYJ27_05260 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RYJ27_09535 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RYJ27_03840 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RYJ27_03845 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RYJ27_03910 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RYJ27_09155 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RYJ27_05745 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RYJ27_06780 tRNA (adenine-N1)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D RYJ27_08375 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RYJ27_11285 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RYJ27_08020 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RYJ27_03415 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_05030 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_08225 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RYJ27_03735 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RYJ27_13475 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RYJ27_07615 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RYJ27_06200 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RYJ27_05145 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D RYJ27_02135 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RYJ27_03730 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RYJ27_04850 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RYJ27_03815 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D RYJ27_05035 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RYJ27_10075 Fe-S cluster assembly protein HesB K13628 iscA; iron-sulfur cluster assembly protein
D RYJ27_10330 glycine cleavage T C-terminal barrel domain-containing protein K06980 ygfZ; tRNA-modifying protein YgfZ
D RYJ27_01100 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RYJ27_10855 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RYJ27_10845 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RYJ27_10860 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RYJ27_07880 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:mliy03012]
D RYJ27_08040 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RYJ27_03800 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RYJ27_04960 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D RYJ27_11530 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RYJ27_11535 fusA; elongation factor G K02355 fusA; elongation factor G
D RYJ27_08265 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D RYJ27_04970 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D RYJ27_08230 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RYJ27_09565 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RYJ27_11395 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RYJ27_06445 efp; elongation factor P K02356 efp; elongation factor P
D RYJ27_07545 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D RYJ27_11920 arfB; alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:mliy03110]
D RYJ27_04095 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RYJ27_12700 AAA family ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RYJ27_01185 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D RYJ27_09835 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D RYJ27_05245 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RYJ27_04075 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_05450 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_12800 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_10205 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYJ27_05460 DnaJ C-terminal domain-containing protein K03686 dnaJ; molecular chaperone DnaJ
D RYJ27_05735 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RYJ27_12790 DnaJ C-terminal domain-containing protein K03686 dnaJ; molecular chaperone DnaJ
D RYJ27_04085 DnaJ C-terminal domain-containing protein K05516 cbpA; curved DNA-binding protein
D RYJ27_04080 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RYJ27_05455 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RYJ27_12795 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RYJ27_04070 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D RYJ27_04120 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D RYJ27_11110 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D RYJ27_04025 S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D RYJ27_10830 groES; co-chaperone GroES K04078 groES; chaperonin GroES
D RYJ27_01110 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RYJ27_08210 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RYJ27_00070 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RYJ27_13440 trxA; thioredoxin K03671 TXN; thioredoxin
D RYJ27_04100 trxA; thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D RYJ27_05010 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:mliy04131]
D RYJ27_05285 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RYJ27_03400 SPFH domain-containing protein K07192 FLOT; flotillin
D RYJ27_07030 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYJ27_10315 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RYJ27_04855 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RYJ27_06635 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RYJ27_05425 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
D RYJ27_12815 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:mliy03051]
D RYJ27_06770 WYL domain-containing protein K13572 pafB; proteasome accessory factor B
D RYJ27_06765 WYL domain-containing protein K13573 pafC; proteasome accessory factor C
C 03032 DNA replication proteins [BR:mliy03032]
D RYJ27_12775 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYJ27_12925 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RYJ27_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RYJ27_13360 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RYJ27_05810 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RYJ27_05135 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_13385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_04515 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYJ27_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYJ27_05700 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYJ27_03310 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYJ27_06870 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_09375 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_03180 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYJ27_04920 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RYJ27_06655 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYJ27_05040 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RYJ27_00030 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RYJ27_06140 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RYJ27_00025 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RYJ27_06130 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RYJ27_00680 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RYJ27_03300 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:mliy03036]
D RYJ27_12775 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYJ27_04770 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RYJ27_03400 SPFH domain-containing protein K07192 FLOT; flotillin
D RYJ27_10070 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2
D RYJ27_12925 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RYJ27_04085 DnaJ C-terminal domain-containing protein K05516 cbpA; curved DNA-binding protein
D RYJ27_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RYJ27_05205 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D RYJ27_11810 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D RYJ27_02910 LysR family transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D RYJ27_04795 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D RYJ27_03990 ScpA family protein K05896 scpA; segregation and condensation protein A
D RYJ27_03995 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D RYJ27_07540 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RYJ27_04435 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RYJ27_07815 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RYJ27_04470 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D RYJ27_00115 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_04455 ftsW; putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_07535 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RYJ27_04475 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RYJ27_06230 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE
D RYJ27_04485 sepF; cell division protein SepF K09772 sepF; cell division inhibitor SepF
D RYJ27_03985 ParA family protein K03496 parA; chromosome partitioning protein
D RYJ27_04355 ParA family protein K03496 parA; chromosome partitioning protein
D RYJ27_13450 ParA family protein K03496 parA; chromosome partitioning protein
D RYJ27_13445 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RYJ27_13455 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RYJ27_04945 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D RYJ27_03980 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D RYJ27_03580 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RYJ27_10720 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D RYJ27_07040 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:mliy03400]
D RYJ27_10045 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RYJ27_10630 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RYJ27_01525 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RYJ27_08460 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RYJ27_12945 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RYJ27_08030 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RYJ27_10175 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RYJ27_00055 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RYJ27_01640 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RYJ27_02080 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RYJ27_06165 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RYJ27_10635 Ada metal-binding domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RYJ27_10050 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RYJ27_04775 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RYJ27_09160 DNA-formamidopyrimidine glycosylase family protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RYJ27_05190 DNA-formamidopyrimidine glycosylase family protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RYJ27_11715 DNA-formamidopyrimidine glycosylase family protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RYJ27_09150 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RYJ27_12640 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RYJ27_05040 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RYJ27_06655 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYJ27_07055 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RYJ27_07065 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RYJ27_07050 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D RYJ27_03645 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_03660 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_10710 3'-5' exonuclease K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYJ27_11615 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RYJ27_11610 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RYJ27_11375 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RYJ27_06535 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RYJ27_09555 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RYJ27_09415 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RYJ27_09420 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RYJ27_04515 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYJ27_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYJ27_05700 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYJ27_03310 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYJ27_06870 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_09375 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RYJ27_03180 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYJ27_05135 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_13385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_03720 recA; recombinase RecA K03553 recA; recombination protein RecA
D RYJ27_06345 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RYJ27_06350 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RYJ27_06340 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RYJ27_06545 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RYJ27_02090 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
D RYJ27_02085 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RYJ27_01205 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D RYJ27_00015 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RYJ27_04750 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RYJ27_05780 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RYJ27_03185 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D RYJ27_03965 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RYJ27_07600 Ku protein K10979 ku; DNA end-binding protein Ku
D RYJ27_07605 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D RYJ27_00030 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RYJ27_06140 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RYJ27_00025 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RYJ27_06130 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RYJ27_00680 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RYJ27_03300 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RYJ27_12925 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RYJ27_00760 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RYJ27_05070 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RYJ27_03760 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RYJ27_04185 DNA polymerase Y family protein K14161 imuB; protein ImuB
D RYJ27_04180 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RYJ27_03725 regulatory protein RecX K03565 recX; regulatory protein
D RYJ27_11710 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D RYJ27_10355 NUDIX domain-containing protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D RYJ27_03975 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D RYJ27_09920 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RYJ27_09915 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:mliy03029]
D RYJ27_08040 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RYJ27_03800 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RYJ27_04960 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D RYJ27_11530 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RYJ27_11535 fusA; elongation factor G K02355 fusA; elongation factor G
D RYJ27_05765 era; GTPase Era K03595 era; GTPase
D RYJ27_03910 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RYJ27_05685 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RYJ27_12350 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RYJ27_08300 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RYJ27_05060 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RYJ27_05065 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RYJ27_05055 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RYJ27_05135 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_13385 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYJ27_04075 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_05450 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_12800 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_04080 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RYJ27_05455 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RYJ27_12795 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RYJ27_10205 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYJ27_10830 groES; co-chaperone GroES K04078 groES; chaperonin GroES
D RYJ27_05460 DnaJ C-terminal domain-containing protein K03686 dnaJ; molecular chaperone DnaJ
D RYJ27_05735 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RYJ27_12790 DnaJ C-terminal domain-containing protein K03686 dnaJ; molecular chaperone DnaJ
D RYJ27_03415 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_05030 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_03580 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RYJ27_06975 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RYJ27_06965 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RYJ27_13465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:mliy02000]
D RYJ27_03410 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RYJ27_10620 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RYJ27_10625 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RYJ27_09675 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D RYJ27_03035 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RYJ27_03040 ABC transporter permease K02018 modB; molybdate transport system permease protein
D RYJ27_03045 ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RYJ27_06510 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYJ27_06515 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYJ27_12850 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYJ27_06505 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_07230 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_12845 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYJ27_12050 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D RYJ27_12045 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D RYJ27_12040 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RYJ27_00335 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RYJ27_00330 proline/glycine betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein
D RYJ27_00325 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D RYJ27_09680 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D RYJ27_09685 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RYJ27_09690 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RYJ27_09695 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D RYJ27_02510 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D RYJ27_00455 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYJ27_02520 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYJ27_02525 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYJ27_07245 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYJ27_07250 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYJ27_11160 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYJ27_11220 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYJ27_11225 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYJ27_00450 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RYJ27_02515 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RYJ27_11155 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RYJ27_11230 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RYJ27_12155 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RYJ27_02655 maltose ABC transporter substrate-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D RYJ27_02660 ABC transporter permease subunit K10109 malF; maltose/maltodextrin transport system permease protein
D RYJ27_10255 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RYJ27_02665 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D RYJ27_02950 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein
D RYJ27_02955 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein
D RYJ27_02960 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein
D RYJ27_10595 sugar transporter K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein
D RYJ27_09790 chvE; multiple monosaccharide ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D RYJ27_09780 mmsB; multiple monosaccharide ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D RYJ27_09785 mmsA; multiple monosaccharide ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RYJ27_02165 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_07715 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_11960 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_12110 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RYJ27_07720 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RYJ27_11945 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RYJ27_12100 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RYJ27_12525 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RYJ27_02170 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_07725 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_11950 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_12105 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_12530 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RYJ27_12520 sugar ABC transporter substrate-binding protein K17202 eryG; erythritol transport system substrate-binding protein
D RYJ27_02175 ABC transporter permease K17206 xltB; putative xylitol transport system permease protein
D RYJ27_11995 sugar ABC transporter substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein
D RYJ27_09110 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RYJ27_09100 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RYJ27_09095 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D RYJ27_09105 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RYJ27_02700 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RYJ27_05485 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RYJ27_02705 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D RYJ27_05490 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D RYJ27_11990 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D RYJ27_02710 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RYJ27_05495 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RYJ27_11985 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RYJ27_10360 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RYJ27_10365 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D RYJ27_10370 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D RYJ27_10375 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RYJ27_03825 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D RYJ27_03830 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein
D RYJ27_03835 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein
D RYJ27_03820 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D RYJ27_01675 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_07120 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_09290 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_10820 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RYJ27_07115 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_09280 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_10795 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RYJ27_09285 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RYJ27_10800 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RYJ27_07110 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_09270 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_10805 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RYJ27_07105 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_09275 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_10810 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RYJ27_10555 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RYJ27_10560 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D RYJ27_10565 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RYJ27_03470 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RYJ27_03475 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RYJ27_03480 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RYJ27_03485 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RYJ27_03500 ABC transporter family substrate-binding protein K13889 gsiB; glutathione transport system substrate-binding protein
D RYJ27_08430 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RYJ27_08435 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RYJ27_08440 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RYJ27_08445 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RYJ27_09060 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D RYJ27_09065 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D RYJ27_09070 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein
D RYJ27_09075 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D RYJ27_01995 siderophore ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D RYJ27_02005 iron chelate uptake ABC transporter family permease subunit K25283 yclO; iron-siderophore transport system permease protein
D RYJ27_02000 ABC transporter permease K25284 yclN; iron-siderophore transport system permease protein
D RYJ27_02010 ATP-binding cassette domain-containing protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D RYJ27_06880 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RYJ27_06930 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D RYJ27_00725 energy-coupling factor transporter transmembrane component T K16785 ecfT; energy-coupling factor transport system permease protein
D RYJ27_01305 energy-coupling factor transporter transmembrane component T K16785 ecfT; energy-coupling factor transport system permease protein
D RYJ27_00730 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D RYJ27_01300 ATP-binding cassette domain-containing protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D RYJ27_01295 ECF transporter S component K16925 ykoE; energy-coupling factor transport system permease protein
D RYJ27_12980 zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D RYJ27_12970 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D RYJ27_12975 ATP-binding cassette domain-containing protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D RYJ27_08810 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RYJ27_08805 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RYJ27_09195 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein
D RYJ27_09200 ABC transporter permease K09694 nodJ; lipooligosaccharide transport system permease protein
D RYJ27_09205 ATP-binding cassette domain-containing protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D RYJ27_10500 ABC transporter permease K09813 hrtB; hemin transport system permease protein
D RYJ27_10495 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D RYJ27_07535 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RYJ27_07540 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RYJ27_01255 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RYJ27_07635 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D RYJ27_08775 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RYJ27_11915 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RYJ27_12665 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RYJ27_00315 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RYJ27_01260 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RYJ27_08770 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RYJ27_11910 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RYJ27_12660 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RYJ27_09620 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RYJ27_06945 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D RYJ27_12605 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D RYJ27_12460 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D RYJ27_04870 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RYJ27_02495 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RYJ27_02975 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RYJ27_08485 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RYJ27_07425 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D RYJ27_03405 DHA2 family efflux MFS transporter permease subunit K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D RYJ27_11905 MFS transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D RYJ27_05425 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
D RYJ27_12815 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
D RYJ27_09035 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RYJ27_09015 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RYJ27_09030 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RYJ27_07320 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RYJ27_09045 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D RYJ27_09040 PTS mannitol transporter subunit IICB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D RYJ27_09025 PTS sugar transporter K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RYJ27_08695 aquaporin K06188 aqpZ; aquaporin Z
D RYJ27_02800 potassium channel family protein K10716 kch; voltage-gated potassium channel
D RYJ27_06235 ammonium transporter K03320 amt; ammonium transporter, Amt family
D RYJ27_10030 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D RYJ27_05170 mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D RYJ27_11690 AmiS/UreI family transporter K22112 amiS; putative amide transporter protein
D RYJ27_00685 CrcB family protein K06199 crcB; fluoride exporter
D RYJ27_00690 CrcB family protein K06199 crcB; fluoride exporter
D RYJ27_10785 TMEM175 family protein K24915 TMEM175; TMEM175 potassium channel family protein
D RYJ27_04160 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_04165 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_05760 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_08510 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_08515 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_09335 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D RYJ27_10280 EamA family transporter K03298 TC.DME; drug/metabolite transporter, DME family
D RYJ27_12890 EamA family transporter K11939 rhtA; inner membrane transporter RhtA
D RYJ27_10825 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D RYJ27_09590 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D RYJ27_10055 sodium/solute symporter K14393 actP; cation/acetate symporter
D RYJ27_09545 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D RYJ27_00790 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D RYJ27_05430 cation:proton antiporter regulatory subunit K07228 khtT; K+:H+ antiporter subunit KhtT
D RYJ27_12810 hypothetical protein K07228 khtT; K+:H+ antiporter subunit KhtT
D RYJ27_05435 cation:proton antiporter K26732 khtU; K+:H+ antiporter subunit KhtU
D RYJ27_02320 potassium transporter TrkG K03498 trkH; trk/ktr system potassium uptake protein
D RYJ27_02315 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D RYJ27_07175 chrA; chromate efflux transporter K07240 chrA; chromate transporter
D RYJ27_10745 chrA; chromate efflux transporter K07240 chrA; chromate transporter
D RYJ27_11355 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D RYJ27_12615 Nramp family divalent metal transporter K03322 mntH; manganese transport protein
D RYJ27_11050 bile acid:sodium symporter K03325 ACR3; arsenite transporter
D RYJ27_13270 arsenite efflux pump K03325 ACR3; arsenite transporter
D RYJ27_00175 Na+/H+ antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D RYJ27_00180 Na(+)/H(+) antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D RYJ27_00185 Na+/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RYJ27_00190 Na+/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D RYJ27_00195 monovalent cation/H+ antiporter complex subunit F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D RYJ27_00200 mnhG; monovalent cation/H(+) antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D RYJ27_13430 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RYJ27_06710 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D RYJ27_02905 LysE/ArgO family amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RYJ27_03515 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D RYJ27_03520 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump
D RYJ27_09485 AI-2E family transporter K20469 K20469; putative heme transporter
D RYJ27_00040 VIT family protein K22736 VIT; vacuolar iron transporter family protein
D RYJ27_06810 VIT1/CCC1 family protein K22736 VIT; vacuolar iron transporter family protein
D RYJ27_07180 VIT1/CCC1 transporter family protein K22736 VIT; vacuolar iron transporter family protein
D RYJ27_00115 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_04455 ftsW; putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RYJ27_00935 cytochrome c biogenesis CcdA family protein K06196 ccdA; cytochrome c-type biogenesis protein
D RYJ27_02390 cytochrome c biogenesis CcdA family protein K06196 ccdA; cytochrome c-type biogenesis protein
D RYJ27_13210 cytochrome c biogenesis CcdA family protein K06196 ccdA; cytochrome c-type biogenesis protein
D RYJ27_00860 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RYJ27_10990 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RYJ27_11320 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RYJ27_00405 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RYJ27_04335 copper resistance protein CopC K07156 copC; copper resistance protein C
D RYJ27_13235 copper resistance protein CopC K07156 copC; copper resistance protein C
C 02044 Secretion system [BR:mliy02044]
D RYJ27_04215 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYJ27_04265 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYJ27_04295 ATPase, T2SS/T4P/T4SS family K02652 pilB; type IV pilus assembly protein PilB
D RYJ27_04240 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D RYJ27_04290 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D RYJ27_04220 pilM; pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RYJ27_04270 pilM; pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RYJ27_04225 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D RYJ27_04275 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D RYJ27_04235 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D RYJ27_04285 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D RYJ27_03275 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RYJ27_07585 ATPase, T2SS/T4P/T4SS family K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RYJ27_03280 type II secretion system F family protein K12510 tadB; tight adherence protein B
D RYJ27_07580 type II secretion system F family protein K12510 tadB; tight adherence protein B
D RYJ27_07575 type II secretion system F family protein K12511 tadC; tight adherence protein C
D RYJ27_07565 TadE/TadG family type IV pilus assembly protein K12513 tadE; tight adherence protein E
D RYJ27_07570 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D RYJ27_04490 YggT family protein K02221 yggT; YggT family protein
D RYJ27_05690 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA
D RYJ27_05695 ComEC/Rec2 family competence protein K02238 comEC; competence protein ComEC
D RYJ27_08610 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RYJ27_06360 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RYJ27_02885 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RYJ27_06365 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RYJ27_07015 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RYJ27_11420 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RYJ27_04825 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RYJ27_04800 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RYJ27_06355 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RYJ27_13465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RYJ27_06760 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RYJ27_03575 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D RYJ27_06755 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:mliy02042]
D RYJ27_04160 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_04165 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_05760 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_08510 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_08515 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYJ27_09460 hemolysin III family protein K11068 hlyIII; hemolysin III
D RYJ27_06840 alkaline phosphatase family protein K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:mliy02022]
D RYJ27_10305 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RYJ27_10300 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3
D RYJ27_10910 response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D RYJ27_08650 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RYJ27_08655 mtrA; MtrAB system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D RYJ27_09635 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RYJ27_10195 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RYJ27_10925 PAS domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RYJ27_09630 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RYJ27_10190 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RYJ27_08570 histidine kinase N-terminal domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D RYJ27_06645 response regulator K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:mliy02035]
D RYJ27_04235 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D RYJ27_04285 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D RYJ27_04295 ATPase, T2SS/T4P/T4SS family K02652 pilB; type IV pilus assembly protein PilB
D RYJ27_04240 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D RYJ27_04290 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D RYJ27_04215 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYJ27_04265 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYJ27_04225 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D RYJ27_04275 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D RYJ27_04220 pilM; pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RYJ27_04270 pilM; pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RYJ27_07570 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D RYJ27_03275 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RYJ27_07585 ATPase, T2SS/T4P/T4SS family K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:mliy04812]
D RYJ27_04475 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RYJ27_03985 ParA family protein K03496 parA; chromosome partitioning protein
D RYJ27_04355 ParA family protein K03496 parA; chromosome partitioning protein
D RYJ27_13450 ParA family protein K03496 parA; chromosome partitioning protein
D RYJ27_13445 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:mliy04147]
D RYJ27_09530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYJ27_07030 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYJ27_07025 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RYJ27_04855 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RYJ27_06635 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RYJ27_00070 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RYJ27_03400 SPFH domain-containing protein K07192 FLOT; flotillin
D RYJ27_10205 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYJ27_04075 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_05450 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_12800 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RYJ27_06990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYJ27_10780 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RYJ27_10790 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RYJ27_11530 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RYJ27_05745 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RYJ27_01215 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RYJ27_04375 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_05045 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RYJ27_08710 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RYJ27_11415 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RYJ27_00395 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RYJ27_03895 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RYJ27_00215 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RYJ27_01490 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RYJ27_05015 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RYJ27_10465 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RYJ27_12395 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RYJ27_05925 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_06070 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYJ27_12290 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RYJ27_07435 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RYJ27_10640 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RYJ27_04330 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06095 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYJ27_06995 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RYJ27_07020 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RYJ27_10315 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:mliy02048]
D RYJ27_02645 DEAD/DEAH box helicase family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D RYJ27_08340 DEAD/DEAH box helicase family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D RYJ27_08335 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D RYJ27_02545 type I restriction-modification system subunit M N-terminal domain-containing protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D RYJ27_02615 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D RYJ27_08330 class I SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D RYJ27_12775 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYJ27_05995 DEAD/DEAH box helicase family protein K01156 res; type III restriction enzyme [EC:3.1.21.5]
D RYJ27_05985 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D RYJ27_10415 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D RYJ27_10420 hypothetical protein K26987 mazE7; antitoxin MazE7
D RYJ27_05610 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D RYJ27_05605 type II toxin-antitoxin system prevent-host-death family antitoxin K19159 yefM; antitoxin YefM
D RYJ27_01560 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D RYJ27_10535 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D RYJ27_10530 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D RYJ27_01965 type II toxin-antitoxin system VapC family toxin K28262 vapC7_13_23; ribonuclease VapC7/13/23 [EC:3.1.-.-]
D RYJ27_01970 hypothetical protein K28263 vapB7; antitoxin VapB7
D RYJ27_11070 type II toxin-antitoxin system VapC family toxin K28279 vapC22; ribonuclease VapC22 [EC:3.1.-.-]
D RYJ27_04475 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RYJ27_07400 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYJ27_03415 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYJ27_05030 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:mliy01504]
D RYJ27_11905 MFS transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D RYJ27_07425 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D RYJ27_12590 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D RYJ27_00720 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:mliy03100]
D RYJ27_00050 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYJ27_05350 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYJ27_05560 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYJ27_09995 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYJ27_01760 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYJ27_05110 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYJ27_08315 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYJ27_10130 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYJ27_05820 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RYJ27_01080 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYJ27_06270 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RYJ27_07395 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYJ27_09665 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYJ27_01085 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYJ27_07310 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYJ27_05220 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYJ27_06265 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYJ27_12875 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYJ27_05100 tRNA-His K14226 tRNA-His; tRNA His
D RYJ27_00045 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYJ27_00135 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_06640 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_06805 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_07590 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_09505 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYJ27_07500 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYJ27_10405 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYJ27_02775 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYJ27_05840 tRNA-Ile K14230 tRNA-Met; tRNA Met
D RYJ27_07790 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYJ27_00900 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RYJ27_01075 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RYJ27_03245 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYJ27_04030 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYJ27_05225 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYJ27_01545 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYJ27_01555 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYJ27_03125 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYJ27_12280 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYJ27_02770 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYJ27_03320 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYJ27_10245 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYJ27_02880 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RYJ27_02680 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RYJ27_05890 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYJ27_06260 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYJ27_06275 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYJ27_03930 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYJ27_03145 ffs; signal recognition particle sRNA small type K01983 ffs; signal recognition particle 4.5S RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RYJ27_09585 SDR family oxidoreductase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D RYJ27_09580 L-idonate 5-dehydrogenase K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264]
D RYJ27_01980 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D RYJ27_09755 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D RYJ27_07735 GMC family oxidoreductase K20927 mpdB; 2-methyl-1,2-propanediol dehydrogenase [EC:1.1.1.400]
D RYJ27_11065 NAD-dependent epimerase/dehydratase family protein K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D RYJ27_11955 Gfo/Idh/MocA family oxidoreductase K24995 E1.1.1.425; levoglucosan dehydrogenase [EC:1.1.1.425]
D RYJ27_09715 mgrA; L-glyceraldehyde 3-phosphate reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D RYJ27_05620 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D RYJ27_05625 alpha-ketoacid dehydrogenase subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D RYJ27_01230 fgd; glucose-6-phosphate dehydrogenase (coenzyme-F420) K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
D RYJ27_10655 nitroreductase family deazaflavin-dependent oxidoreductase K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-]
D RYJ27_11020 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D RYJ27_08995 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RYJ27_04685 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RYJ27_10235 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RYJ27_08555 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RYJ27_07845 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RYJ27_00740 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RYJ27_00500 NtaA/DmoA family FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RYJ27_11190 NtaA/DmoA family FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RYJ27_11195 NtaA/DmoA family FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RYJ27_11205 NtaA/DmoA family FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RYJ27_12145 NtaA/DmoA family FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RYJ27_12165 NtaA/DmoA family FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RYJ27_05385 merA; mercury(II) reductase K00520 merA; mercuric reductase [EC:1.16.1.1]
D RYJ27_02490 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RYJ27_12860 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RYJ27_00805 glutaredoxin domain-containing protein K18917 mrx1; mycoredoxin [EC:1.20.4.3]
D RYJ27_09345 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D RYJ27_00975 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RYJ27_06745 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RYJ27_12240 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RYJ27_13195 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RYJ27_11055 3-oxoacyl-ACP synthase III K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D RYJ27_00985 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RYJ27_06620 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RYJ27_12255 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RYJ27_09645 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D RYJ27_05930 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D RYJ27_05150 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RYJ27_08415 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D RYJ27_03615 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D RYJ27_09980 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D RYJ27_09730 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RYJ27_00160 nucS; endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-]
D RYJ27_03510 serine hydrolase domain-containing protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D RYJ27_12895 serine hydrolase domain-containing protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D RYJ27_04370 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RYJ27_05830 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RYJ27_05650 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D RYJ27_07685 carbon-nitrogen hydrolase family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D RYJ27_03140 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RYJ27_08675 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RYJ27_11575 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RYJ27_04305 NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D RYJ27_11235 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K26364 K26364; mimosinase [EC:4.3.3.8]
D RYJ27_12510 sugar phosphate isomerase/epimerase family protein K18910 dpe; D-psicose/D-tagatose/L-ribulose 3-epimerase [EC:5.1.3.30 5.1.3.31]
D RYJ27_07925 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D RYJ27_11060 alpha/beta fold hydrolase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D RYJ27_00995 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D RYJ27_12215 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D RYJ27_13175 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D RYJ27_05400 cation-translocating P-type ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]
D RYJ27_13255 cation-translocating P-type ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]
D RYJ27_13335 cation-translocating P-type ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]
D RYJ27_13350 cation-translocating P-type ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D RYJ27_03075 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein
D RYJ27_00370 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
D RYJ27_09925 nrdI; class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D RYJ27_09850 EI24 domain-containing protein K06203 cysZ; CysZ protein
D RYJ27_04480 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D RYJ27_09010 GNAT family protein K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D RYJ27_01050 AarF/ABC1/UbiB kinase family protein K03688 ubiB; ubiquinone biosynthesis protein
D RYJ27_01350 AarF/UbiB family protein K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
D RYJ27_04130 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D RYJ27_12655 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D RYJ27_11705 alpha/beta hydrolase-fold protein K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RYJ27_04155 cold-shock protein K03704 cspA; cold shock protein
D RYJ27_10160 cold shock domain-containing protein K03704 cspA; cold shock protein
D RYJ27_10215 cold-shock protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D RYJ27_05090 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D RYJ27_05230 tig; trigger factor K03545 tig; trigger factor
D RYJ27_00950 ferric reductase-like transmembrane domain-containing protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D RYJ27_07530 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D RYJ27_09930 nrdH; glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH
D RYJ27_04935 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D RYJ27_00940 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein
D RYJ27_02395 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein
D RYJ27_13205 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein
D RYJ27_00545 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D RYJ27_02555 DUF1156 domain-containing protein K07445 K07445; putative DNA methylase
D RYJ27_09380 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D RYJ27_04930 YraN family protein K07460 yraN; putative endonuclease
D RYJ27_04940 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein
D RYJ27_06390 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D RYJ27_02250 IS30 family transposase K07482 K07482; transposase, IS30 family
D RYJ27_05420 IS30 family transposase K07482 K07482; transposase, IS30 family
D RYJ27_05475 IS30 family transposase K07482 K07482; transposase, IS30 family
D RYJ27_13295 IS30 family transposase K07482 K07482; transposase, IS30 family
D RYJ27_02230 transposase K07483 K07483; transposase
D RYJ27_02240 transposase K07483 K07483; transposase
D RYJ27_10485 transposase K07483 K07483; transposase
D RYJ27_12760 transposase K07483 K07483; transposase
D RYJ27_13285 transposase K07483 K07483; transposase
D RYJ27_05375 IS110 family transposase K07486 K07486; transposase
D RYJ27_08325 IS110 family transposase K07486 K07486; transposase
D RYJ27_09875 IS110 family transposase K07486 K07486; transposase
D RYJ27_09885 IS110 family transposase K07486 K07486; transposase
D RYJ27_12740 IS110 family transposase K07486 K07486; transposase
D RYJ27_10440 IS256 family transposase K07493 K07493; putative transposase
D RYJ27_02245 IS3 family transposase K07497 K07497; putative transposase
D RYJ27_05530 IS3 family transposase K07497 K07497; putative transposase
D RYJ27_05570 IS3 family transposase K07497 K07497; putative transposase
D RYJ27_06700 IS3 family transposase K07497 K07497; putative transposase
D RYJ27_10525 IS3 family transposase K07497 K07497; putative transposase
D RYJ27_12190 IS3 family transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D RYJ27_08395 PspA/IM30 family protein K03969 pspA; phage shock protein A
D RYJ27_13075 rhodanese-like domain-containing protein K03972 pspE; phage shock protein E
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RYJ27_00695 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RYJ27_06035 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RYJ27_07960 anion permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D RYJ27_04615 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
C 99978 Cell growth
D RYJ27_13460 R3H domain-containing nucleic acid-binding protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D RYJ27_03505 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D RYJ27_05750 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D RYJ27_09450 PhoH family protein K07175 phoH2; PhoH-like ATPase
D RYJ27_02650 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
C 99994 Others
D RYJ27_10310 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein
D RYJ27_00965 NAD(P)/FAD-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport
D RYJ27_03355 MSMEG_0569 family flavin-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport
D RYJ27_13240 NAD(P)-binding domain-containing protein K07222 K07222; putative flavoprotein involved in K+ transport
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RYJ27_04145 GNAT family N-acetyltransferase K02348 elaA; ElaA protein
D RYJ27_04600 PHP domain-containing protein K04477 ycdX; putative hydrolase
D RYJ27_05165 globin K06886 glbN; hemoglobin
D RYJ27_02410 efflux RND transporter permease subunit K06994 K06994; putative drug exporter of the RND superfamily
D RYJ27_03850 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RYJ27_09325 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RYJ27_06960 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D RYJ27_06955 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D RYJ27_04300 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D RYJ27_09145 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D RYJ27_06220 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D RYJ27_06835 histidine phosphatase family protein K15640 K15640; uncharacterized phosphatase
D RYJ27_13200 cytochrome c oxidase assembly protein K02351 K02351; putative membrane protein
D RYJ27_09495 LemA family protein K03744 lemA; LemA protein
D RYJ27_05675 DedA family protein K03975 dedA; membrane-associated protein
D RYJ27_07595 VTT domain-containing protein K03975 dedA; membrane-associated protein
D RYJ27_02405 ABC transporter permease K01421 yhgE; putative membrane protein
D RYJ27_03855 hypothetical protein K01421 yhgE; putative membrane protein
D RYJ27_13005 phage holin family protein K08972 K08972; putative membrane protein
D RYJ27_02375 DUF368 domain-containing protein K08974 K08974; putative membrane protein
D RYJ27_01145 PH domain-containing protein K08981 K08981; putative membrane protein
D RYJ27_04630 YchJ family metal-binding protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D RYJ27_11260 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D RYJ27_09750 DUF255 domain-containing protein K06888 K06888; uncharacterized protein
D RYJ27_06210 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein
D RYJ27_06530 CoA-binding protein K06929 K06929; uncharacterized protein
D RYJ27_04840 RNA-binding protein K06960 K06960; uncharacterized protein
D RYJ27_00745 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D RYJ27_02040 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D RYJ27_05935 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein
D RYJ27_02875 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D RYJ27_04995 alpha/beta fold hydrolase K07018 K07018; uncharacterized protein
D RYJ27_03600 alpha/beta family hydrolase K07020 K07020; uncharacterized protein
D RYJ27_12480 amidohydrolase family protein K07045 K07045; uncharacterized protein
D RYJ27_07850 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein
D RYJ27_04040 sodium-dependent bicarbonate transport family permease K07086 K07086; uncharacterized protein
D RYJ27_12960 permease K07089 K07089; uncharacterized protein
D RYJ27_02805 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RYJ27_10965 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RYJ27_11885 metallophosphoesterase K07095 K07095; uncharacterized protein
D RYJ27_03250 metallophosphoesterase family protein K07098 K07098; uncharacterized protein
D RYJ27_08465 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D RYJ27_10265 NAD(P)H-binding protein K07118 K07118; uncharacterized protein
D RYJ27_04635 SDR family oxidoreductase K07124 K07124; uncharacterized protein
D RYJ27_12730 LON peptidase substrate-binding domain-containing protein K07157 K07157; uncharacterized protein
D RYJ27_05895 C4-type zinc ribbon domain-containing protein K07164 K07164; uncharacterized protein
D RYJ27_13470 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D RYJ27_03115 bifunctional nuclease family protein K08999 K08999; uncharacterized protein
D RYJ27_09520 DUF501 domain-containing protein K09009 K09009; uncharacterized protein
D RYJ27_03675 UPF0182 family protein K09118 K09118; uncharacterized protein
D RYJ27_12765 DUF2357 domain-containing protein K09124 K09124; uncharacterized protein
D RYJ27_09140 DUF2071 domain-containing protein K09166 K09166; uncharacterized protein
D RYJ27_01140 PH domain-containing protein K09167 K09167; uncharacterized protein
D RYJ27_12090 DUF917 domain-containing protein K09703 K09703; uncharacterized protein
D RYJ27_07525 SIMPL domain-containing protein K09807 K09807; uncharacterized protein
D RYJ27_08170 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D RYJ27_12000 glycoside hydrolase family 127 protein K09955 K09955; uncharacterized protein
D RYJ27_13395 DUF779 domain-containing protein K09959 K09959; uncharacterized protein
D RYJ27_13230 zf-TFIIB domain-containing protein K09981 K09981; uncharacterized protein
D RYJ27_02475 DUF402 domain-containing protein K07586 ygaC; uncharacterized protein
D RYJ27_08045 YlxR family protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: July 17, 2025