+F Repair protein KO
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DNA Repair and Recombination Proteins - Methanosarcina mazei Go1
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MM_1020 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D MM_0852 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MM_0277 T/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E MM_0471 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E MM_0895 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E MM_1280 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
E MM_1397 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
E MM_0906 FLAP endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E MM_2714 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E MM_1587 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
E MM_1299 Replication factor-A protein K07466 RFA1; replication factor A1
D Other NER factors
E MM_2714 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
E MM_1299 Replication factor-A protein K07466 RFA1; replication factor A1
D RFC (replication factor C)
D Other MMR factors
E MM_1397 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
E MM_2714 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
E MM_1299 Replication factor-A protein K07466 RFA1; replication factor A1
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
D MM_1397 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D MM_0920 MutT related protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MM_1399 MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MM_2743 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MM_1628 Deoxycytidine triphosphate deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MM_1020 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D MM_0852 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MM_0486 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E MM_0277 T/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E MM_0895 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E MM_1280 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E MM_3148 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E MM_0460 putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E MM_2716 conserved protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E MM_1970 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E MM_0213 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E MM_3291 Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
E MM_3289 Excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
E MM_3290 Excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C
E MM_0190 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E MM_1683 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
E MM_1374 mutS; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E MM_1682 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E MM_0190 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E MM_2194 DNA repair protein RAD50 K03546 sbcC; DNA repair protein SbcC/Rad50
E MM_2193 DNA repair protein K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E MM_1668 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E MM_0198 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E MM_2716 conserved protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E MM_1970 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E MM_0213 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AddAB pathway proteins
D Other HR factor
E MM_0559 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E MM_3249 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E MM_3125 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E MM_2610 Type I restriction enzyme K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E MM_0457 recombination/repair protein RadA K04483 radA; DNA repair protein RadA
E MM_1369 DNA repair protein K04484 radB; DNA repair protein RadB
E MM_2194 DNA repair protein RAD50 K03546 sbcC; DNA repair protein SbcC/Rad50
E MM_2193 DNA repair protein K03547 sbcD; DNA repair protein SbcD/Mre11
E MM_0425 helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F MM_2420 DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F MM_2419 DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F MM_3076 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F MM_0183 DNA topoisomerase III K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F MM_2716 conserved protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F MM_1970 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F MM_0213 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Facilitator
E Supressor
F MM_1217 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F MM_3291 Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
F MM_3289 Excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D MM_2876 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
D MM_0886 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
D MM_1894 DNA polymerase beta K02347 polX; DNA polymerase (family X)
C DNA helicases
D MM_0028 Superfamily I DNA and RNA helicase K03658 helD; DNA helicase IV [EC:5.6.2.4]
D MM_3282 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D MM_1917 ATP-dependent RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D MM_0920 MutT related protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MM_1399 MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MM_2743 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MM_1628 Deoxycytidine triphosphate deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MM_2830 Ribonucleoside-diphosphate K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
D MM_0856 conserved protein K22585 nreA; DNA repair protein NreA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024