+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanosarcina mazei Go1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MM_1020 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MM_0852 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MM_0277 T/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MM_0471 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E MM_0895 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E MM_1280 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E MM_1397 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E MM_0906 FLAP endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E MM_2714 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E MM_1587 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E MM_1299 Replication factor-A protein K07466 RFA1; replication factor A1 D Other NER factors E MM_2714 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E MM_1299 Replication factor-A protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E MM_1397 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E MM_2714 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E MM_1299 Replication factor-A protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D MM_1397 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MM_0920 MutT related protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MM_1399 MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MM_2743 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MM_1628 Deoxycytidine triphosphate deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MM_1020 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MM_0852 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MM_0486 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MM_0277 T/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MM_0895 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E MM_1280 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MM_3148 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MM_0460 putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E MM_2716 conserved protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MM_1970 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MM_0213 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E MM_3291 Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E MM_3289 Excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E MM_3290 Excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C E MM_0190 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MM_1683 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E MM_1374 mutS; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MM_1682 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E MM_0190 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MM_2194 DNA repair protein RAD50 K03546 sbcC; DNA repair protein SbcC/Rad50 E MM_2193 DNA repair protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MM_1668 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MM_0198 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MM_2716 conserved protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MM_1970 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MM_0213 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E MM_0559 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E MM_3249 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E MM_3125 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E MM_2610 Type I restriction enzyme K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E MM_0457 recombination/repair protein RadA K04483 radA; DNA repair protein RadA E MM_1369 DNA repair protein K04484 radB; DNA repair protein RadB E MM_2194 DNA repair protein RAD50 K03546 sbcC; DNA repair protein SbcC/Rad50 E MM_2193 DNA repair protein K03547 sbcD; DNA repair protein SbcD/Mre11 E MM_0425 helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MM_2420 DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MM_2419 DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MM_3076 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F MM_0183 DNA topoisomerase III K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MM_2716 conserved protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MM_1970 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MM_0213 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F MM_1217 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MM_3291 Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F MM_3289 Excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MM_2876 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] D MM_0886 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D MM_1894 DNA polymerase beta K02347 polX; DNA polymerase (family X) C DNA helicases D MM_0028 Superfamily I DNA and RNA helicase K03658 helD; DNA helicase IV [EC:5.6.2.4] D MM_3282 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MM_1917 ATP-dependent RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MM_0920 MutT related protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MM_1399 MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MM_2743 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MM_1628 Deoxycytidine triphosphate deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MM_2830 Ribonucleoside-diphosphate K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D MM_0856 conserved protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024