+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanosarcina mazei C16

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MSMAC_0286 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MSMAC_0472 Deoxyribodipyrimidine photolyase, type II K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MSMAC_0813 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E MSMAC_0428 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E MSMAC_0036 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E MSMAC_3286 DNA polymerase sliding clamp protein PCNA K04802 PCNA; proliferating cell nuclear antigen E MSMAC_0418 Flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E MSMAC_1123 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E MSMAC_3101 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E MSMAC_0015 Replication factor A (ssDNA-binding protein) K07466 RFA1; replication factor A1 D Other NER factors E MSMAC_1123 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E MSMAC_0015 Replication factor A (ssDNA-binding protein) K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E MSMAC_3286 DNA polymerase sliding clamp protein PCNA K04802 PCNA; proliferating cell nuclear antigen E MSMAC_1123 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E MSMAC_0015 Replication factor A (ssDNA-binding protein) K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D MSMAC_3286 DNA polymerase sliding clamp protein PCNA K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MSMAC_3284 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MSMAC_0404 GDP-mannose mannosyl hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MSMAC_1156 MuT/NUDIX protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MSMAC_1392 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MSMAC_0286 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MSMAC_0472 Deoxyribodipyrimidine photolyase, type II K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MSMAC_0800 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MSMAC_0428 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E MSMAC_0036 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MSMAC_2882 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MSMAC_0833 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E MSMAC_1125 Phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MSMAC_2450 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MSMAC_1709 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E MSMAC_2756 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E MSMAC_2758 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E MSMAC_2757 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E MSMAC_2470 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MSMAC_2508 ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MSMAC_1445 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E MSMAC_3329 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MSMAC_1444 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E MSMAC_2470 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MSMAC_2508 ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MSMAC_1948 DNA double-strand break repair Rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E MSMAC_1947 DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MSMAC_2463 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MSMAC_1125 Phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MSMAC_2450 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MSMAC_1709 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E MSMAC_0739 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E MSMAC_0836 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E MSMAC_3324 DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E MSMAC_1948 DNA double-strand break repair Rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E MSMAC_1947 DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 E MSMAC_0867 Putative ski2-type helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MSMAC_2174 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MSMAC_2173 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MSMAC_2477 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F MSMAC_2965 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MSMAC_1125 Phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MSMAC_2450 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MSMAC_1709 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F MSMAC_0103 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MSMAC_2756 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F MSMAC_2758 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MSMAC_0436 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] D MSMAC_1278 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D MSMAC_1638 DNA polymerase X family K02347 polX; DNA polymerase (family X) C DNA helicases D MSMAC_2765 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MSMAC_1660 Putative ski2-type helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MSMAC_3284 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MSMAC_0404 GDP-mannose mannosyl hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MSMAC_1156 MuT/NUDIX protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MSMAC_1392 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MSMAC_1229 Ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D MSMAC_0468 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024