+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mycobacterium marinum E11

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MMARE11_38910 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MMARE11_38920 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MMARE11_15920 phrI; DNA photolyase, PhrI K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MMARE11_16560 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MMARE11_24140 mpg; 3-methyladenine DNA glycosylase, Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MMARE11_49040 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MMARE11_49860 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E MMARE11_44960 ercc3; DNA helicase Ercc3 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MMARE11_41040 mutT2; mutator protein MutT2 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MMARE11_06650 mutT3; mutator protein MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MMARE11_23130 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MMARE11_19410 dut; deoxyuridine 5-triphosphate nucleotidohydrolase DutT K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MMARE11_38910 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MMARE11_38920 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MMARE11_15920 phrI; DNA photolyase, PhrI K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MMARE11_16560 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MMARE11_39920 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MMARE11_38900 alkA; Ada regulatory protein AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MMARE11_24140 mpg; 3-methyladenine DNA glycosylase, Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MMARE11_49040 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MMARE11_40400 tagA; DNA-3-methyladenine glycosylase I TagA K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MMARE11_17040 fpg; formamidopyrimidine-DNA glycosylase Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MMARE11_43720 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MMARE11_36950 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E MMARE11_12050 nei; endonuclease VIII Nei K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E MMARE11_49860 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MMARE11_06920 xthA; exodeoxyribonuclease III protein XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MMARE11_09510 end; endonuclease IV (apurinase) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E MMARE11_16150 ligA; DNA ligase [NAD dependent] LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MMARE11_23550 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MMARE11_23660 uvrA; excinuclease ABC (subunit A-DNA-binding ATPase) UvrA K03701 uvrA; excinuclease ABC subunit A E MMARE11_23600 uvrB; excinuclease ABC (subunit B-helicase) UvrB K03702 uvrB; excinuclease ABC subunit B E MMARE11_21490 uvrC; excinuclease ABC (subunit c-nuclease) UvrC K03703 uvrC; excinuclease ABC subunit C E MMARE11_43660 uvrD1; ATP-dependent DNA helicase II UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MMARE11_13260 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MMARE11_13310 uvrD2; ATP-dependent DNA helicase II UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MMARE11_23550 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E MMARE11_16150 ligA; DNA ligase [NAD dependent] LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MMARE11_09460 rpoB; DNA-directed RNA polymerase, beta subunit, RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MMARE11_09470 rpoC; DNA-directed RNA polymerase, beta chain, RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MMARE11_10470 rpoA; DNA-directed RNA polymerase (alpha chain), RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MMARE11_21250 rpoZ; DNA-directed RNA polymerase (omega chain) RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MMARE11_42800 mfd; transcription-repair coupling factor Mfd (TrcF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E MMARE11_41770 xseA; exodeoxyribonuclease vii (large subunit) XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MMARE11_41780 xseB; exodeoxyribonuclease vii (small subunit) XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MMARE11_22910 dnaE1; DNA polymerase III, alpha subunit, DnaE1 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MMARE11_00020 dnaN; DNA polymerase III (beta chain) DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MMARE11_36410 holA; DNA polymerase III, delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MMARE11_49580 conserved protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MMARE11_50510 dnaQ; DNA polymerase III (epsilon subunit) DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MMARE11_31370 conserved hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MMARE11_50610 dnaZX; DNA polymerase III (subunit gamma/tau) DnaZX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MMARE11_16150 ligA; DNA ligase [NAD dependent] LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MMARE11_43660 uvrD1; ATP-dependent DNA helicase II UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MMARE11_13260 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MMARE11_13310 uvrD2; ATP-dependent DNA helicase II UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MMARE11_00720 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein E MMARE11_37140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E MMARE11_44110 DNA G:T-mismatch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MMARE11_09070 recB; exodeoxyribonuclease V (beta chain), RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E MMARE11_09080 recC; exodeoxyribonuclease V (gamma chain), RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E MMARE11_09060 recD; exodeoxyribonuclease V (alpha chain), RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E MMARE11_19010 recA; recombinase A RecA K03553 recA; recombination protein RecA E MMARE11_20510 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MMARE11_20520 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MMARE11_20500 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E MMARE11_21330 priA; primosomal protein N PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E MMARE11_19010 recA; recombinase A RecA K03553 recA; recombination protein RecA E MMARE11_49000 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E MMARE11_00030 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E MMARE11_16610 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MMARE11_35800 recO; recombination protein O RecO K03584 recO; DNA repair protein RecO (recombination protein O) E MMARE11_50540 recR; recombination protein RecR K06187 recR; recombination protein RecR E MMARE11_24290 recN; DNA repair protein, RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E MMARE11_20510 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MMARE11_20520 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MMARE11_20500 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E MMARE11_37430 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E MMARE11_43870 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E MMARE11_43850 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MMARE11_00060 gyrA; DNA gyrase (subunit A) GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MMARE11_00050 gyrB; DNA gyrase (subunit B) GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MMARE11_49600 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MMARE11_16470 hupB; DNA-binding protein Hu, HupB K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MMARE11_35800 recO; recombination protein O RecO K03584 recO; DNA repair protein RecO (recombination protein O) F MMARE11_50540 recR; recombination protein RecR K06187 recR; recombination protein RecR F MMARE11_16150 ligA; DNA ligase [NAD dependent] LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F MMARE11_23660 uvrA; excinuclease ABC (subunit A-DNA-binding ATPase) UvrA K03701 uvrA; excinuclease ABC subunit A F MMARE11_23600 uvrB; excinuclease ABC (subunit B-helicase) UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MMARE11_52280 dinP; nucleotidyltransferase/DNA polymerase DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MMARE11_22810 dinP_1; DNA polymerase IV, DinP_1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D MMARE11_19010 recA; recombinase A RecA K03553 recA; recombination protein RecA D MMARE11_19160 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D MMARE11_24290 recN; DNA repair protein, RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D MMARE11_11110 conserved hypothetical protein K14161 imuB; protein ImuB D MMARE11_11180 dnaE2; DNA polymerase III, alpha chain, DnaE2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D MMARE11_00720 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein D MMARE11_37140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MMARE11_19020 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D MMARE11_38790 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MMARE11_12060 lhr; ATP-dependent helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MMARE11_41040 mutT2; mutator protein MutT2 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MMARE11_06650 mutT3; mutator protein MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MMARE11_23130 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MMARE11_16480 mutT1; hydrolase MutT1 K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D MMARE11_24330 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D MMARE11_39350 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D MMARE11_19410 dut; deoxyuridine 5-triphosphate nucleotidohydrolase DutT K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MMARE11_15630 nrdE; ribonucleoside-diphosphate reductase (alpha chain) NrdE K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MMARE11_15680 nrdF2; ribonucleoside-diphosphate reductase (beta chain) NrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D MMARE11_18240 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024