+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Mercenaria mercenaria (northern quahog)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        123554921 DNA-directed RNA polymerase II subunit RPB1-like	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        123546580 DNA-directed RNA polymerase II subunit RPB2 isoform X1	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        128557687 DNA-directed RNA polymerase II subunit RPB3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        123549086 DNA-directed RNA polymerase II subunit RPB3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        123533939 DNA-directed RNA polymerase II subunit RPB11-a-like	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        123527558 DNA-directed RNA polymerase II subunit RPB4-like	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        123559527 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        123529325 DNA-directed RNA polymerase II subunit RPB9-like	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        123566531 DNA-directed RNA polymerase II subunit GRINL1A-like	K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A 
D      Pol I, II, III common subunits
E        123524342 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        123551828 DNA-directed RNA polymerases I, II, and III subunit RPABC2-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        123559369 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        123545431 transcription initiation factor IIA subunit 1-like	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        128559823 transcription initiation factor IIA subunit 1-like	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        123542123 transcription initiation factor IIA subunit 2-like	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        123551964 transcription initiation factor IIB-like isoform X1	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        123533478 TATA-box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123523982 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123524207 TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123524466 TATA-box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123558168 uncharacterized protein LOC123558168	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123530998 uncharacterized protein LOC123530998	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123565296 uncharacterized protein LOC123565296	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123566428 uncharacterized protein LOC123566428	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123556421 transcription initiation factor TFIID subunit 1-like isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        123523740 transcription initiation factor TFIID subunit 2-like isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        123529977 transcription initiation factor TFIID subunit 3-like isoform X1	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        123549392 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        123536393 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        123539435 transcription initiation factor TFIID subunit 5-like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        123545060 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        123555008 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        128554453 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        123557440 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        123536668 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        123554193 transcription initiation factor TFIID subunit 9B-like	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        123536650 transcription initiation factor TFIID subunit 11-like	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        123551448 transcription initiation factor TFIID subunit 12-like isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        123551891 transcription initiation factor TFIID subunit 13-like	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        123534220 RNA-binding protein cabeza-like isoform X1	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        123552121 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        123524579 general transcription factor IIE subunit 2-like	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        123523792 general transcription factor IIF subunit 1-like	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        123543409 general transcription factor IIF subunit 1-like	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        123554188 general transcription factor IIF subunit 2-like	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        123537332 general transcription factor IIH subunit 1-like	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        123526536 general transcription factor IIH subunit 2-like	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        123534338 general transcription factor IIH subunit 3-like	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        123552310 general transcription factor IIH subunit 4-like	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        123531569 general transcription and DNA repair factor IIH helicase subunit XPB-like	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        123523782 general transcription and DNA repair factor IIH helicase subunit XPD-like isoform X1	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        123565821 cyclin-dependent kinase 7-like	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        128557058 CDK-activating kinase assembly factor MAT1-like	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        123533617 cyclin-H-like	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        123526428 mediator of RNA polymerase II transcription subunit 6-like isoform X1	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        123524495 mediator of RNA polymerase II transcription subunit 8-like	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        123553916 mediator of RNA polymerase II transcription subunit 11-like	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        123528932 mediator of RNA polymerase II transcription subunit 17-like isoform X1	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        123536120 mediator of RNA polymerase II transcription subunit 18-like	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        123535185 mediator of RNA polymerase II transcription subunit 19-like	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        123529067 mediator of RNA polymerase II transcription subunit 20-like	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        123537498 mediator of RNA polymerase II transcription subunit 22-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        123546125 mediator of RNA polymerase II transcription subunit 28-like	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        123545061 mediator of RNA polymerase II transcription subunit 29-like	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        123540463 mediator of RNA polymerase II transcription subunit 30-like isoform X1	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        123531730 mediator of RNA polymerase II transcription subunit 1-like	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        123554883 mediator of RNA polymerase II transcription subunit 4-like	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        123556927 mediator of RNA polymerase II transcription subunit 7-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        128545848 mediator of RNA polymerase II transcription subunit 7-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        123563611 mediator of RNA polymerase II transcription subunit 9-like	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        123548555 mediator of RNA polymerase II transcription subunit 10-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        123553178 mediator of RNA polymerase II transcription subunit 21-like	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        123534500 mediator of RNA polymerase II transcription subunit 31-A-like	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        123552209 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 14-like	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        128556470 mediator of RNA polymerase II transcription subunit 14-like	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        123534966 mediator of RNA polymerase II transcription subunit 15-like isoform X1	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        123557959 mediator of RNA polymerase II transcription subunit 16-like	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        128554636 cyclin-dependent kinase 8-like isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        123551688 cyclin-dependent kinase 8-like isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        128551413 cyclin-C-like	K15161 CCNC; cyclin-C 
E        123553962 cyclin-C-like	K15161 CCNC; cyclin-C 
E        123556014 mediator of RNA polymerase II transcription subunit 12-like protein	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
D      Other mediators
E        123524461 mediator of RNA polymerase II transcription subunit 23-like isoform X1	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        123533502 mediator of RNA polymerase II transcription subunit 24-like	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        123537136 mediator of RNA polymerase II transcription subunit 25-like isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        123525184 mediator of RNA polymerase II transcription subunit 26-like	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        123566371 mediator of RNA polymerase II transcription subunit 27-like isoform X1	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        123530072 histone acetyltransferase KAT2B-like isoform X1	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        123532700 transformation/transcription domain-associated protein-like isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        123551405 transcription initiation protein SPT3 homolog	K11313 SUPT3H; transcription initiation protein SPT3 
E        123543840 transcriptional adapter 2-alpha-like	K11314 TADA2A; transcriptional adapter 2-alpha 
E        123532275 transcriptional adapter 2-beta-like	K15127 TADA2B; transcriptional adapter 2-beta 
E        128550094 transcriptional adapter 3-B-like isoform X1	K11315 TADA3; transcriptional adapter 3 
E        123559854 transcriptional adapter 1-like	K11317 TADA1; transcriptional adapter 1 
E        123523740 transcription initiation factor TFIID subunit 2-like isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        123549392 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        123536393 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        123539435 transcription initiation factor TFIID subunit 5-like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        123545060 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        123555008 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        128554453 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        123557440 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        123554193 transcription initiation factor TFIID subunit 9B-like	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        123551448 transcription initiation factor TFIID subunit 12-like isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        123559940 ataxin-7-like protein 3 isoform X2	K11363 SGF11; SAGA-associated factor 11 
E        123533837 SAGA-associated factor 29-like	K11364 SGF29; SAGA-associated factor 29 
E        123556585 STAGA complex 65 subunit gamma-like	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        123528889 serine-rich adhesin for platelets-like	K11318 ATXN7; ataxin-7 
E        123566424 chromodomain-helicase-DNA-binding protein 1-like isoform X4	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        123548509 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        123564251 ubiquitin carboxyl-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        128554402 splicing factor 3B subunit 3-like	K12830 SF3B3; splicing factor 3B subunit 3 
E        123550492 splicing factor 3B subunit 3-like	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        123525242 probable global transcription activator SNF2L2 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        123533759 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        123560974 SWI/SNF complex subunit SMARCC2-like isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        123532112 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        123561508 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        123544892 actin, cytoplasmic-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123534037 actin-3-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123556721 actin, adductor muscle	K05692 ACTB_G1; actin beta/gamma 1 
E        123524376 actin, cytoplasmic 1-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123524379 actin, cytoplasmic-like isoform X1	K05692 ACTB_G1; actin beta/gamma 1 
E        123524499 actin-2-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123561408 actin, cytoplasmic-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123564486 actin, cytoplasmic-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123564487 uncharacterized protein LOC123564487	K05692 ACTB_G1; actin beta/gamma 1 
E        123531868 actin, cytoplasmic-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123536361 actin-like protein 6B	K11652 ACTL6B; actin-like protein 6B 
E        123551867 trithorax group protein osa-like isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        123551605 AT-rich interactive domain-containing protein 2-like isoform X1	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        123528557 protein polybromo-1-like isoform X1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        123533759 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        123566153 activated RNA polymerase II transcriptional coactivator p15-like isoform X1	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        123564375 cell division cycle and apoptosis regulator protein 1-like isoform X2	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        123523854 transcription elongation factor A protein 1-like isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        123533583 transcription elongation factor SPT4-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        123537632 transcription elongation factor SPT5-like	K15172 SUPT5H; transcription elongation factor SPT5 
E        123533295 transcription elongation factor SPT6-like isoform X1	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        123547197 transcription termination factor 2-like isoform X1	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        123558235 uncharacterized protein LOC123558235	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        123549228 cleavage and polyadenylation specificity factor subunit 1-like	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        123536324 cleavage and polyadenylation specificity factor subunit 3-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        123563051 cleavage and polyadenylation specificity factor subunit 4-like	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        123533645 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        123535518 serine/threonine-protein phosphatase alpha-3 isoform-like isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        123535544 serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        123564754 uncharacterized protein LOC123564754	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        123564358 symplekin-like isoform X1	K06100 SYMPK; symplekin 
E        123527272 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        123536147 5'-3' exoribonuclease 2-like isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        123563690 decapping and exoribonuclease protein-like isoform X1	K14845 RAI1; RAT1-interacting protein 
E        123563692 decapping and exoribonuclease protein-like	K14845 RAI1; RAT1-interacting protein 
E        123563693 decapping and exoribonuclease protein-like isoform X1	K14845 RAI1; RAT1-interacting protein 
E        123563694 decapping and exoribonuclease protein-like	K14845 RAI1; RAT1-interacting protein 
E        123549084 regulation of nuclear pre-mRNA domain-containing protein 1B-like isoform X2	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        128558017 regulation of nuclear pre-mRNA domain-containing protein 1B-like	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        123552314 LOW QUALITY PROTEIN: paraspeckle component 1-like	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        123552800 SR-related and CTD-associated factor 4-like isoform X1	K13191 RBM16; RNA-binding protein 16 
E        123545574 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like isoform X1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        123536279 RNA polymerase II-associated factor 1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        128550328 RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        123533780 RNA polymerase-associated protein LEO1-like	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        123526864 RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        123546316 negative elongation factor A-like	K15179 WHSC2; negative elongation factor A 
E        123549409 negative elongation factor B-like	K15180 COBRA1; negative elongation factor B 
E        123549712 negative elongation factor D-like	K15181 TH1L; negative elongation factor C/D 
E        123551878 negative elongation factor E-like isoform X1	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        123566432 RNA polymerase II elongation factor ELL2-like	K15183 ELL; RNA polymerase II elongation factor ELL 
E        123557315 AF4/FMR2 family member 4-like isoform X1	K15185 AFF4; AF4/FMR2 family member 4 
E        123531945 ELL-associated factor 1-like isoform X1	K15186 EAF; ELL-associated factor 
E        123566553 protein AF-9-like	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        123558522 cyclin-dependent kinase 9-like	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
E        123528682 cyclin-dependent kinase 9-like	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        123566432 RNA polymerase II elongation factor ELL2-like	K15183 ELL; RNA polymerase II elongation factor ELL 
E        123532611 uncharacterized protein LOC123532611	K26144 ICE2; little elongation complex subunit 2 
D      Brd4/P-TEFb complex
E        123558522 cyclin-dependent kinase 9-like	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
E        123528682 cyclin-dependent kinase 9-like	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        123559796 protein HEXIM1-like	K15189 HEXIM1_2; protein HEXIM1/2 
E        123530122 protein HEXIM1-like	K15189 HEXIM1_2; protein HEXIM1/2 
E        123526478 7SK snRNA methylphosphate capping enzyme-like	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        123563483 la-related protein 7-like isoform X1	K15191 LARP7; La-related protein 7 
E        123558522 cyclin-dependent kinase 9-like	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
E        123528682 cyclin-dependent kinase 9-like	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
D      Others
E        123562447 LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        123555273 protein Dr1-like	K21751 DR1; down-regulator of transcription 1 
E        123536838 glutamic acid-rich protein-like	K15193 SPTY2D1; protein SPT2 
E        123549182 RNA polymerase II subunit A C-terminal domain phosphatase-like	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        123538366 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        123554857 protein IWS1 homolog isoform X1	K17498 SPN1; transcription factor SPN1 
E        128550707 uncharacterized protein LOC128550707	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        123544708 RNA polymerase II-associated protein 1-like	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        123551030 putative RNA polymerase II subunit B1 CTD phosphatase rpap2 isoform X1	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        123529085 RNA polymerase II-associated protein 3-like	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        128555584 cyclin-K-like isoform X1	K23326 CCNK; cyclin K 
E        123533916 GPN-loop GTPase 1-like	K24104 GPN; GPN-loop GTPase 
E        123534310 GPN-loop GTPase 3-like	K24104 GPN; GPN-loop GTPase 
E        123566384 GPN-loop GTPase 2-like	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        123564296 DNA-directed RNA polymerase III subunit RPC1-like isoform X1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        123551797 DNA-directed RNA polymerase III subunit RPC2-like isoform X1	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        123542905 DNA-directed RNA polymerases I and III subunit RPAC1-like	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        123557525 DNA-directed RNA polymerases I and III subunit RPAC2-like	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        123565427 DNA-directed RNA polymerase III subunit RPC3-like	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        123563161 DNA-directed RNA polymerase III subunit RPC4-like	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        123564978 DNA-directed RNA polymerase III subunit RPC5-like isoform X1	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        123533107 DNA-directed RNA polymerase III subunit RPC6-like isoform X1	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        123566272 DNA-directed RNA polymerase III subunit RPC7-like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        123563159 DNA-directed RNA polymerase III subunit RPC8-like	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        123523468 DNA-directed RNA polymerase III subunit RPC9-like	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        128552772 DNA-directed RNA polymerase III subunit RPC9-like	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
D      Pol I, II, III common subunits
E        123524342 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        123551828 DNA-directed RNA polymerases I, II, and III subunit RPABC2-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        123559369 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
C    Basal transcription factors
D      TFIIIA
E        123556746 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        123533478 TATA-box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123523982 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123524207 TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123524466 TATA-box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123558168 uncharacterized protein LOC123558168	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123530998 uncharacterized protein LOC123530998	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123565296 uncharacterized protein LOC123565296	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123566428 uncharacterized protein LOC123566428	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123536568 transcription factor IIIB 90 kDa subunit-like isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        123546883 transcription factor IIIB 50 kDa subunit-like	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
D      TFIIIC
E        123529242 general transcription factor 3C polypeptide 1-like	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        123540441 uncharacterized protein LOC123540441	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        123524603 general transcription factor 3C polypeptide 3-like	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        123551017 general transcription factor 3C polypeptide 5-like	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        123529472 general transcription factor 3C polypeptide 6-like	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        123551017 general transcription factor 3C polypeptide 5-like	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        123524603 general transcription factor 3C polypeptide 3-like	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        123531746 snRNA-activating protein complex subunit 1-like	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        123566402 snRNA-activating protein complex subunit 3-like	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        123537411 snRNA-activating protein complex subunit 5-like	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        123561849 POU domain, class 2, transcription factor 3L-like	K09364 POU2F; POU domain transcription factor, class 2 
D      Others
E        123536261 zinc finger protein 76-like isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
E        128554205 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
E        123549122 repressor of RNA polymerase III transcription MAF1 homolog isoform X1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        123551623 DNA-directed RNA polymerase I subunit RPA1-like	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        123530999 DNA-directed RNA polymerase I subunit RPA2-like	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        123542905 DNA-directed RNA polymerases I and III subunit RPAC1-like	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        123557525 DNA-directed RNA polymerases I and III subunit RPAC2-like	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        123557464 DNA-directed RNA polymerase I subunit RPA49-like	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        123544161 DNA-directed RNA polymerase I subunit RPA12-like	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        123524342 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        123551828 DNA-directed RNA polymerases I, II, and III subunit RPABC2-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        123559369 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
C    Basal transcription factors
D      SL1/TIF-1B
E        123533478 TATA-box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123523982 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123524207 TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123524466 TATA-box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123558168 uncharacterized protein LOC123558168	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123530998 uncharacterized protein LOC123530998	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123565296 uncharacterized protein LOC123565296	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123566428 uncharacterized protein LOC123566428	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        123532948 TATA box-binding protein-associated factor RNA polymerase I subunit A-like	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        123546812 TATA box-binding protein-associated factor RNA polymerase I subunit B-like	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        123523126 uncharacterized protein LOC123523126 isoform X1	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        123564136 RNA polymerase I-specific transcription initiation factor RRN3-like	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        123546569 uncharacterized protein LOC123546569	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        123533583 transcription elongation factor SPT4-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        123537632 transcription elongation factor SPT5-like	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        123556775 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like isoform X3	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
E        123551956 LOW QUALITY PROTEIN: nucleolar protein dao-5-like	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        123551964 transcription initiation factor IIB-like isoform X1	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        123552121 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024