+E Transcription factors KO #

  Transcription Factors - Mycobacterium marinum M

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D MMAR_3921 conserved hypothetical phage DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D MMAR_1063 transcriptional regulatory protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D MMAR_4081 alkA; Ada regulatory protein AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D MMAR_2756 oxyR; hydrogen peroxide-inducible genes activator, OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D MMAR_4157 transcriptional regulatory protein (LysR family) K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon C DeoR family C LacI family C GntR family D MMAR_4842 regulatory protein K03710 K03710; GntR family transcriptional regulator D MMAR_2560 transcriptional regulatory protein (probably GntR-family) K03710 K03710; GntR family transcriptional regulator D MMAR_0304 transcriptional regulatory protein (probably GntR-family) K03710 K03710; GntR family transcriptional regulator D MMAR_0820 transcriptional regulatory protein (probably GntR-family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D MMAR_3975 transcriptional regulatory protein (FadR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D MMAR_4832 transcriptional regulatory protein (probably TetR-family) K09017 rutR; TetR/AcrR family transcriptional regulator D MMAR_0287 transcriptional regulatory protein K09017 rutR; TetR/AcrR family transcriptional regulator D MMAR_4834 transcriptional regulatory protein (TetR family) K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D MMAR_0630 transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D MMAR_0355 transcriptional regulatory protein (possibly TetR-family) K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D MMAR_1026 transcriptional regulator (TetR family) K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D MMAR_2831 transcriptional regulator K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D MMAR_2833 transcriptional regulator (TetR family) K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D MMAR_5405 ethR; transcriptional regulatory repressor protein (TetR-family) EthR K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator D MMAR_3762 transcriptional regulatory protein (AcrR family) K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator D MMAR_2281 transcriptional regulatory protein K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D MMAR_0929 TetR-family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D MMAR_4839 transcriptional regulatory protein (TetR-family) K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D MMAR_5069 transcriptional regulatory protein (TetR-family) K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D MMAR_0141 transcriptional regulatory protein (probably TetR-family) K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D MMAR_5046 transcriptional regulatory protein (probably TetR-family) K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D MMAR_2297 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D MMAR_1019 transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system D MMAR_2873 mce3R; transcriptional repressor (probably TetR-family) Mce3R K27107 mce3R; TetR/AcrR family transcriptional regulator, mce3 operon repressor D MMAR_1142 transcriptional regulator K22295 K22295; TetR/AcrR family transcriptional regulator, repressor for neighboring sulfatase D MMAR_0923 transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response D MMAR_1611 transcriptional regulatory protein K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D MMAR_3557 transcriptional regulatory protein (probably Lrp/AsnC-family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D MMAR_1242 transcriptional regulatory protein (probably AsnC-family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D MMAR_4163 conserved hypothetical transcriptional regulator (Lrp family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D MMAR_2876 conserved hypothetical regulatory protein K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism C MarR family D MMAR_0145 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D MMAR_0640 hspR; heat shock protein transcriptional repressor HspR (MerR family) K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D MMAR_2990 hspR_2; heat shock protein transcriptional repressor HspR_2 K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D MMAR_0009 transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator C Fur family D MMAR_3669 zur; Zinc uptake regulation protein Zur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D MMAR_1874 ferric uptake regulation protein FurB-like protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D MMAR_2915 furA; ferric uptake regulation protein FurA K22297 furA; Fur family transcriptional regulator, stress-responsive regulator C IclR family C CRP/FNR family D MMAR_5164 conserved regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D MMAR_1621 transcriptional regulatory protein K21884 cmr; CRP/FNR family transcriptional regulator, cAMP and macrophage regulator C Rrf2 family C ArsR family D MMAR_2056 transcriptional regulatory protein (probably ArsR-family) K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D MMAR_2058 transcriptional regulatory protein (probably ArsR-family) K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D MMAR_4852 ArsR-family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D MMAR_3668 transcriptional regulatory protein (probably ArsR-family) K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D MMAR_1378 transcriptional regulatory protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D MMAR_0790 transcriptional regulatory protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D MMAR_1970 transcriptional regulatory protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator C PadR family C Other families D MMAR_2002 ideR; iron-dependent repressor and activator IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D MMAR_1920 sirR; transcriptional repressor SirR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D MMAR_2720 transcriptional regulatory protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D MMAR_1257 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D MMAR_0024 plasmid maintenance system antidote protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D MMAR_3604 plasmid maintenance system antidote protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D MMAR_5399 conserved protein K27097 espR; ESX-1-secreted protein regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D MMAR_1282 whiB2; transcriptional regulatory protein Whib-like WhiB2 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MMAR_5170 whiB4; transcriptional regulatory protein Whib-like WhiB4 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MMAR_1132 whiB3; WhiB-like regulatory protein, WhiB3 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MMAR_1338 whiB1; transcriptional regulatory protein Whib-like WhiB1 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MMAR_0041 whiB5; transcriptional regulatory protein (Whib-like), WhiB5 K18956 whiB5; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MMAR_5437 conserved hypothetical protein K18957 whiB6; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MMAR_1365 whiB7; transcriptional regulatory protein Whib-like WhiB7 K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D MMAR_4874 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D MMAR_0433 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D MMAR_1412 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D MMAR_1447 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D MMAR_2538 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D MMAR_0930 embR_2; transcriptional regulatory protein EmbR_2 K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon D MMAR_4155 embR; transcriptional regulatory protein EmbR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon D MMAR_3545 embR_1; transcriptional regulatory protein EmbR_1 K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon D MMAR_5481 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D MMAR_5083 conserved transcriptional regulatory protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D MMAR_2467 argR; arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism D MMAR_3684 hrcA; heat shock protein transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D MMAR_0229 conserved hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D MMAR_1003 conserved hypothetical regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D MMAR_2194 pyrR; pyrimidine operon regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D MMAR_3794 transcriptional regulatory protein K07734 paiB; transcriptional regulator D MMAR_0053 conserved hypothetical protein K07735 algH; putative transcriptional regulator D MMAR_1994 membrane-associated regulatory protein K07738 nrdR; transcriptional repressor NrdR D MMAR_3203 conserved protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0