+E Transcription factors KO
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Transcription Factors - Mycobacterium marinum M
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D MMAR_3921 conserved hypothetical phage DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D MMAR_1063 transcriptional regulatory protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D MMAR_4081 alkA; Ada regulatory protein AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D MMAR_2756 oxyR; hydrogen peroxide-inducible genes activator, OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D MMAR_4157 transcriptional regulatory protein (LysR family) K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
C DeoR family
C LacI family
C GntR family
D MMAR_4842 regulatory protein K03710 K03710; GntR family transcriptional regulator
D MMAR_2560 transcriptional regulatory protein (probably GntR-family) K03710 K03710; GntR family transcriptional regulator
D MMAR_0304 transcriptional regulatory protein (probably GntR-family) K03710 K03710; GntR family transcriptional regulator
D MMAR_0820 transcriptional regulatory protein (probably GntR-family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MMAR_3975 transcriptional regulatory protein (FadR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D MMAR_4832 transcriptional regulatory protein (probably TetR-family) K09017 rutR; TetR/AcrR family transcriptional regulator
D MMAR_0287 transcriptional regulatory protein K09017 rutR; TetR/AcrR family transcriptional regulator
D MMAR_4834 transcriptional regulatory protein (TetR family) K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D MMAR_0630 transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D MMAR_0355 transcriptional regulatory protein (possibly TetR-family) K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D MMAR_1026 transcriptional regulator (TetR family) K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor
D MMAR_2831 transcriptional regulator K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor
D MMAR_2833 transcriptional regulator (TetR family) K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor
D MMAR_5405 ethR; transcriptional regulatory repressor protein (TetR-family) EthR K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D MMAR_3762 transcriptional regulatory protein (AcrR family) K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D MMAR_2281 transcriptional regulatory protein K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D MMAR_0929 TetR-family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MMAR_4839 transcriptional regulatory protein (TetR-family) K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MMAR_5069 transcriptional regulatory protein (TetR-family) K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MMAR_0141 transcriptional regulatory protein (probably TetR-family) K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MMAR_5046 transcriptional regulatory protein (probably TetR-family) K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MMAR_2297 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D MMAR_1019 transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system
D MMAR_2873 mce3R; transcriptional repressor (probably TetR-family) Mce3R K27107 mce3R; TetR/AcrR family transcriptional regulator, mce3 operon repressor
D MMAR_1142 transcriptional regulator K22295 K22295; TetR/AcrR family transcriptional regulator, repressor for neighboring sulfatase
D MMAR_0923 transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
D MMAR_1611 transcriptional regulatory protein K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D MMAR_3557 transcriptional regulatory protein (probably Lrp/AsnC-family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D MMAR_1242 transcriptional regulatory protein (probably AsnC-family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D MMAR_4163 conserved hypothetical transcriptional regulator (Lrp family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D MMAR_2876 conserved hypothetical regulatory protein K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism
C MarR family
D MMAR_0145 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D MMAR_0640 hspR; heat shock protein transcriptional repressor HspR (MerR family) K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D MMAR_2990 hspR_2; heat shock protein transcriptional repressor HspR_2 K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D MMAR_0009 transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
C Fur family
D MMAR_3669 zur; Zinc uptake regulation protein Zur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MMAR_1874 ferric uptake regulation protein FurB-like protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MMAR_2915 furA; ferric uptake regulation protein FurA K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
C CRP/FNR family
D MMAR_5164 conserved regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D MMAR_1621 transcriptional regulatory protein K21884 cmr; CRP/FNR family transcriptional regulator, cAMP and macrophage regulator
C Rrf2 family
C ArsR family
D MMAR_2056 transcriptional regulatory protein (probably ArsR-family) K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MMAR_2058 transcriptional regulatory protein (probably ArsR-family) K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MMAR_4852 ArsR-family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D MMAR_3668 transcriptional regulatory protein (probably ArsR-family) K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D MMAR_1378 transcriptional regulatory protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D MMAR_0790 transcriptional regulatory protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D MMAR_1970 transcriptional regulatory protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
C Other families
D MMAR_2002 ideR; iron-dependent repressor and activator IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D MMAR_1920 sirR; transcriptional repressor SirR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D MMAR_2720 transcriptional regulatory protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D MMAR_1257 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D MMAR_0024 plasmid maintenance system antidote protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D MMAR_3604 plasmid maintenance system antidote protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D MMAR_5399 conserved protein K27097 espR; ESX-1-secreted protein regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D MMAR_1282 whiB2; transcriptional regulatory protein Whib-like WhiB2 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MMAR_5170 whiB4; transcriptional regulatory protein Whib-like WhiB4 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MMAR_1132 whiB3; WhiB-like regulatory protein, WhiB3 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MMAR_1338 whiB1; transcriptional regulatory protein Whib-like WhiB1 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MMAR_0041 whiB5; transcriptional regulatory protein (Whib-like), WhiB5 K18956 whiB5; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MMAR_5437 conserved hypothetical protein K18957 whiB6; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MMAR_1365 whiB7; transcriptional regulatory protein Whib-like WhiB7 K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MMAR_4874 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MMAR_0433 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MMAR_1412 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MMAR_1447 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MMAR_2538 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MMAR_0930 embR_2; transcriptional regulatory protein EmbR_2 K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MMAR_4155 embR; transcriptional regulatory protein EmbR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MMAR_3545 embR_1; transcriptional regulatory protein EmbR_1 K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MMAR_5481 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MMAR_5083 conserved transcriptional regulatory protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D MMAR_2467 argR; arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism
D MMAR_3684 hrcA; heat shock protein transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D MMAR_0229 conserved hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D MMAR_1003 conserved hypothetical regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D MMAR_2194 pyrR; pyrimidine operon regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D MMAR_3794 transcriptional regulatory protein K07734 paiB; transcriptional regulator
D MMAR_0053 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D MMAR_1994 membrane-associated regulatory protein K07738 nrdR; transcriptional repressor NrdR
D MMAR_3203 conserved protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0