+F Repair protein KO
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DNA Repair and Recombination Proteins - Mycobacterium marinum M
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MMAR_4082 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D MMAR_1671 phrI; DNA photolyase, PhrI K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MMAR_1737 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E MMAR_2487 mpg; 3-methyladenine DNA glycosylase, Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E MMAR_5089 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E MMAR_5162 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E MMAR_4671 ercc3; DNA helicase Ercc3 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D MMAR_0716 mutT3; mutator protein MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MMAR_4290 mutT2; mutator protein MutT2 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MMAR_4841 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MMAR_2017 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase DutT K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D MMAR_4082 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D MMAR_1671 phrI; DNA photolyase, PhrI K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E MMAR_1737 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E MMAR_0590 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E MMAR_4181 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E MMAR_4081 alkA; Ada regulatory protein AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E MMAR_2487 mpg; 3-methyladenine DNA glycosylase, Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E MMAR_5089 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E MMAR_4228 tagA; DNA-3-methyladenine glycosylase I TagA K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E MMAR_1783 fpg; formamidopyrimidine-DNA glycosylase Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E MMAR_4559 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E MMAR_1237 nei; endonuclease VIII Nei K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E MMAR_3812 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E MMAR_5162 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E MMAR_0742 xthA; exodeoxyribonuclease III protein XthA K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
E MMAR_0999 end; endonuclease IV (apurinase) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
D DNA ligase
E MMAR_1694 ligA; DNA ligase [NAD dependent] LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E MMAR_2432 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E MMAR_2443 uvrA; excinuclease ABC (subunit A-DNA-binding ATPase) UvrA K03701 uvrA; excinuclease ABC subunit A
E MMAR_2437 uvrB; excinuclease ABC (subunit B-helicase) UvrB K03702 uvrB; excinuclease ABC subunit B
E MMAR_2227 uvrC; excinuclease ABC (subunit c-nuclease) UvrC K03703 uvrC; excinuclease ABC subunit C
E MMAR_1359 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MMAR_1364 uvrD2; ATP-dependent DNA helicase II UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MMAR_3598 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MMAR_4553 uvrD1; ATP-dependent DNA helicase II UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MMAR_2432 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
E MMAR_1694 ligA; DNA ligase [NAD dependent] LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F MMAR_0995 rpoB; DNA-directed RNA polymerase, beta subunit, RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F MMAR_0996 rpoC; DNA-directed RNA polymerase, beta chain, RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F MMAR_1090 rpoA; DNA-directed RNA polymerase (alpha chain), RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F MMAR_2203 rpoZ; DNA-directed RNA polymerase (omega chain) RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F MMAR_4465 mfd; transcription-repair coupling factor Mfd (TrcF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E MMAR_4357 xseA; exodeoxyribonuclease vii (large subunit) XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E MMAR_4358 xseB; exodeoxyribonuclease vii (small subunit) XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E MMAR_2369 dnaE1; DNA polymerase III, alpha subunit, DnaE1 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E MMAR_0002 dnaN; DNA polymerase III (beta chain) DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E MMAR_3926 dnaN_1; DNA polymerase III (beta chain) DnaN_1 K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E MMAR_3734 holA; DNA polymerase III, delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E MMAR_5136 conserved protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E MMAR_3235 conserved hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E MMAR_5228 dnaQ; DNA polymerase III (epsilon subunit) DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E MMAR_5240 dnaZX; DNA polymerase III (subunit gamma/tau) DnaZX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E MMAR_1694 ligA; DNA ligase [NAD dependent] LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E MMAR_1359 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MMAR_1364 uvrD2; ATP-dependent DNA helicase II UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MMAR_3598 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MMAR_4553 uvrD1; ATP-dependent DNA helicase II UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E MMAR_0073 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
E MMAR_3831 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E MMAR_0957 recB; exodeoxyribonuclease V (beta chain), RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E MMAR_0958 recC; exodeoxyribonuclease V (gamma chain), RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E MMAR_0956 recD; exodeoxyribonuclease V (alpha chain), RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E MMAR_1977 recA; recombinase A RecA K03553 recA; recombination protein RecA
E MMAR_2110 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E MMAR_2111 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E MMAR_2109 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E MMAR_2211 priA; primosomal protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E MMAR_3599 chromosome partition ATPase protein K03546 sbcC; DNA repair protein SbcC/Rad50
E MMAR_3600 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E MMAR_1977 recA; recombinase A RecA K03553 recA; recombination protein RecA
E MMAR_5085 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E MMAR_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E MMAR_1742 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E MMAR_3672 recO; recombination protein O RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E MMAR_5231 recR; recombination protein RecR K06187 recR; recombination protein RecR
E MMAR_2501 recN; DNA repair protein, RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E MMAR_2110 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E MMAR_2111 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E MMAR_2109 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E MMAR_3599 chromosome partition ATPase protein K03546 sbcC; DNA repair protein SbcC/Rad50
E MMAR_3600 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
E MMAR_3858 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E MMAR_4575 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku
E MMAR_4573 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F MMAR_0006 gyrA; DNA gyrase (subunit A) GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F MMAR_0005 gyrB; DNA gyrase (subunit B) GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F MMAR_5138 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F MMAR_1728 hupB; DNA-binding protein Hu, HupB K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F MMAR_3672 recO; recombination protein O RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F MMAR_5231 recR; recombination protein RecR K06187 recR; recombination protein RecR
F MMAR_1694 ligA; DNA ligase [NAD dependent] LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F MMAR_2443 uvrA; excinuclease ABC (subunit A-DNA-binding ATPase) UvrA K03701 uvrA; excinuclease ABC subunit A
F MMAR_2437 uvrB; excinuclease ABC (subunit B-helicase) UvrB K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D MMAR_2359 dinP_1; DNA polymerase IV, DinP_1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D MMAR_5406 dinP; nucleotidyltransferase/DNA polymerase DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D MMAR_1977 recA; recombinase A RecA K03553 recA; recombination protein RecA
D MMAR_1992 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D MMAR_2501 recN; DNA repair protein, RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D MMAR_1151 conserved hypothetical protein K14161 imuB; protein ImuB
D MMAR_1158 dnaE2; DNA polymerase III, alpha chain, DnaE2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D MMAR_0073 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D MMAR_3831 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D MMAR_1978 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D MMAR_4069 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D MMAR_1238 lhr; ATP-dependent helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D MMAR_0716 mutT3; mutator protein MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MMAR_4290 mutT2; mutator protein MutT2 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MMAR_4841 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MMAR_1729 mutT1; hydrolase MutT1 K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D MMAR_2505 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D MMAR_2017 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase DutT K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MMAR_1642 nrdE; ribonucleoside-diphosphate reductase (alpha chain) NrdE K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D MMAR_1647 nrdF2; ribonucleoside-diphosphate reductase (beta chain) NrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D MMAR_1896 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 5, 2025